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Description
Nutrient rich agricultural runoff is a major source of phosphorus (P) and nitrogen (N) loading to surface waters, resulting in eutrophication and harmful algal blooms. The most effective nutrient removal technologies often have cost, land, or operational requirements that limits use in the decentralized areas that need it most. This

Nutrient rich agricultural runoff is a major source of phosphorus (P) and nitrogen (N) loading to surface waters, resulting in eutrophication and harmful algal blooms. The most effective nutrient removal technologies often have cost, land, or operational requirements that limits use in the decentralized areas that need it most. This dissertation investigated combined physical-chemical and microbiological technologies for combined P and N removal from nonpoint sources. Chapter 2 investigated the combination of basic oxygen furnace (BOF) steel slag and woody mulch for P removal by mineral precipitation and N removal by microbial denitrification. When combined with mulch in column experiments, slag with high fines content achieved complete P removal under unsaturated conditions. Batch experiments showed that microbial denitrification occurred under the highly alkaline conditions created by steel slag, but the timescale differential between P and N removal was a critical barrier to combining these treatment technologies. Chapter 3 evaluated a field-scale slag filter to treat agricultural tile drainage and lab-scale column experiments to provide insight on field conditions that impacted P removal. Increases in alkalinity had negative influences on P removal through inhibition of P mineral precipitation by BOF slag, while blast furnace (BF) steel slag was less impacted by alkalinity due to primarily adsorptive P removal. Regeneration strategies were identified based on water quality and slag type.Chapters 4 and 5 explored biological ion exchange (BIEX) as an option for addressing the timescale offset identified in Chapter 1. In Chapter 4 columns fed with dissolved organic matter (DOM) were not regenerated and over 50% DOM removal was observed, with the primary mechanism of removal identified as secondary ion exchange (SIEX) between sulfate and DOM fractions with high affinities for ion exchange. Chapter 5 aimed to expand BIEX to N treatment through batch denitrification and adsorption experiments, which revealed a positive relationship between molecular weight of organic molecules and their ability to displace nitrate. This work shows that by having an improved understanding of impacted water characteristics, the information presented in this work can be used to select and implement effective treatment technologies for decentralized areas.
ContributorsEdgar, Michael Garrett (Author) / Boyer, Treavor H (Thesis advisor) / Hamdan, Nasser (Committee member) / Delgado, Anca (Committee member) / Arizona State University (Publisher)
Created2022
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Description
DehaloR^2 is a previously characterized, trichloroethene (TCE)-dechlorinating culture and contains bacteria from the known dechlorinating genus, Dehalococcoides. DehaloR^2 was exposed to three anthropogenic contaminants, Triclocarban (TCC), tris(2-chloroethyl) phosphate (TCEP), and 1,1,1-trichloroethane (TCA) and two biogenic-like halogenated compounds, 2,6-dibromophenol (2,6-DBP) and 2,6-dichlorophenol (2,6-DCP). The effects on TCE dechlorination ability due to

DehaloR^2 is a previously characterized, trichloroethene (TCE)-dechlorinating culture and contains bacteria from the known dechlorinating genus, Dehalococcoides. DehaloR^2 was exposed to three anthropogenic contaminants, Triclocarban (TCC), tris(2-chloroethyl) phosphate (TCEP), and 1,1,1-trichloroethane (TCA) and two biogenic-like halogenated compounds, 2,6-dibromophenol (2,6-DBP) and 2,6-dichlorophenol (2,6-DCP). The effects on TCE dechlorination ability due to 2,6-DBP and 2,6-DCP exposures were also investigated. DehaloR^2 did not dechlorinate TCC or TCEP. After initial exposure to TCA, half of the initial TCA was dechlorinated to 1,1-dichloroethane (DCA), however half of the TCA remained by day 100. Subsequent TCA and TCE re-exposure showed no reductive dechlorination activity for both TCA and TCE by 120 days after the re-exposure. It has been hypothesized that the microbial TCE-dechlorinating ability was developed before TCE became abundant in groundwater. This dechlorinating ability would have existed in the microbial metabolism due to previous exposure to biogenic halogenated compounds. After observing the inability of DehaloR^2 to dechlorinate other anthropogenic compounds, DehaloR^2 was then exposed to two naturally occurring halogenated phenols, 2,6-DBP and 2,6-DCP, in the presence and absence of TCE. DehaloR^2 debrominated 2,6-DBP through the intermediate 2-bromophenol (2-BP) to the end product phenol faster in the presence of TCE. DehaloR^2 dechlorinated 2,6-DCP to 2-CP in the absence of TCE; however, 2,6-DCP dechlorination was incomplete in the presence of TCE. Additionally, when 2,6-DBP was present, complete TCE dechlorination to ethene occurred more quickly than when TCE was present without 2,6-DBP. However, when 2,6-DCP was present, TCE dechlorination to ethene had not completed by day 55. The increased dehalogenation rate of 2,6-DBP and TCE when present together compared to conditions containing only 2,6-DBP or only TCE suggests a possible synergistic relationship between 2,6-DBP and TCE, while the decreased dechlorination rate of 2,6-DCP and TCE when present together compared to conditions containing only 2,6-DCP or only TCE suggests an inhibitory effect.
ContributorsKegerreis, Kylie (Author) / Krajmalnik-Brown, Rosa (Thesis advisor) / Halden, Rolf U. (Committee member) / Torres, César I (Committee member) / Arizona State University (Publisher)
Created2012
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Description
Bacterial biofilms exist on surfaces within pressurized water systems, posing threats to water quality and causing fouling or microbial induced corrosion. Germicidal UV irradiation has shown promise in deactivating planktonic pathogens in water but challenges in delivering light to surfaces where biofilms exist have limited advancement in understanding biofilm response

Bacterial biofilms exist on surfaces within pressurized water systems, posing threats to water quality and causing fouling or microbial induced corrosion. Germicidal UV irradiation has shown promise in deactivating planktonic pathogens in water but challenges in delivering light to surfaces where biofilms exist have limited advancement in understanding biofilm response to UV-C light. This dissertation aims to overcome the limitation of delivering UV-C light through use of side-emitting optical fibers (SEOFs), advance capabilities to produce SEOFs and understand if a minimum UV-C irradiance can prevent biofilm formation. Two scalable manufacturing approaches were developed for producing kilometer lengths of thin (≤500-µm) and physically flexible SEOFs. One strategy involved dip-coating amine-functionalized SiO2 nanoparticles (NPs) on bare optical fiber, followed by a coating of UV-C transparent polymer (CyTop). I showed that NPs closer to the surface achieved with higher ionic strength solutions increased side-scattering of UV-C light. This phenomenon was primarily attributed to the interaction between NPs and evanescent wave energy. The second strategy omitted NPs but utilized a post-treatment to the UV-C transparent polymer that increased surface roughness on the outer fiber surface. This modification maintained the physical flexibility of the fiber while promoting side-emission of UV-C light. The side emission was due to the enhancement of refracted light energy. Both methods were successfully scaled up for potential commercial production. Experimental platforms were created to study biofilm responses to UV light on metal or flexible plastic pipe (1/4” ID) surfaces. Delivering UV-C light via SEOFs with irradiances >8 µW/cm2 inhibited biofilm accumulation. Neither UV-A nor UV-B light inhibited biofilm growth. At very low UV-C irradiance (<3 µW/cm2), biofilms were not inhibited. Functional genomic analysis revealed that biofilms irradiated by insufficient UV-C irradiance upregulated various essential genes related to DNA repair, energy metabolism, quorum sensing, mobility, and EPS synthesis. When net UV-C biofilm inactivation rates exceeded the biofilm growth rate, biofilms were inhibited. Insights gained from this dissertation work shed light on the prospective applications of UV-C technology in addressing biofilm challenges within water infrastructure across multiple sectors, from potable water to healthcare applications.
ContributorsZhao, Zhe (Author) / Westerhoff, Paul (Thesis advisor) / Rittmann, Bruce (Committee member) / Abbaszadegan, Morteza (Committee member) / Álvarez, Pedro (Committee member) / Arizona State University (Publisher)
Created2023
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Description
Water quality assessment is essential for maintaining healthy ecosystems and protecting human health. Data interrogation and exploratory data analysis techniques are used to analyze the spatial and temporal variability of water quality parameters, identifying correlations, and to better understand the factors that impacts microbial and chemical quality of water. The

Water quality assessment is essential for maintaining healthy ecosystems and protecting human health. Data interrogation and exploratory data analysis techniques are used to analyze the spatial and temporal variability of water quality parameters, identifying correlations, and to better understand the factors that impacts microbial and chemical quality of water. The seasonal dynamics of microbiome in surface waters were investigated to identify the factors driving these dynamics. Initial investigation analyzed two decades of regional water quality data from 20 various locations in Central Arizona, USA. Leveraging advanced data science techniques, the study uncovered correlations between crucial parameters, including dissolved organic carbon (DOC), ultraviolet absorbance (UVA), and specific ultraviolet absorbance (SUVA). These findings provide foundational insights into the dynamic of overall water quality. A comprehensive 12-month surface water sample collection and study was conducted to investigate potential bias in bacterial detection using EPA approved Membrane Filtration (MF) technique. The results underscore that while MF excels in recovering bacteria of public health significance, it exhibits biases, particularly against small and spore-forming bacteria and Archaea, such as Bacilli, Mollicutes, Methylacidiphilae, and Parvarchaea. This emphasizes the importance of complementing standard microbiology approaches to mitigate technological biases and enhance the accuracy of microbial water quality testing, especially for emerging pathogens. Furthermore, a complementary study of microbial dynamics within a model drinking water distribution systems (DWDSs) using treated water from the same source water as the above study. The influence of pipe material and water temperature on the microbiome and trace element composition was investigated. The research unveiled a preferential link between pipe material and trace elements, with water temperature significantly impacting the microbiome to a higher degree than the chemical composition of water. Notably, Legionellaceae and Mycobacteriaceae were found to be prevalent in warmer waters, highlighting the substantial influence of water temperature on the microbiome, surpassing that of pipe material. These studies provide comprehensive insights into the spatial and temporal variability of water quality parameters. Analyzing microbial data in depth is crucial in detecting bacterial species within a monitoring program for adjusting operational conditions to reduce the presence of microbial pathogens and enhance the quality of drinking water.
ContributorsAloraini, Saleh (Author) / Abbaszadegan, Morteza (Thesis advisor) / Fox, Peter (Committee member) / Perreault, Francois (Committee member) / Alum, Absar (Committee member) / Arizona State University (Publisher)
Created2023
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Description
Groundwater contamination is of environmental and human health concern. Bioremediation is a nature-based method for contaminant treatment. Bioremediation, which relies on the ability of microorganisms to destroy or transform contaminants, must be reliable and cost-competitive in comparison to more traditional treatment methods. Two hurdles must be overcome

Groundwater contamination is of environmental and human health concern. Bioremediation is a nature-based method for contaminant treatment. Bioremediation, which relies on the ability of microorganisms to destroy or transform contaminants, must be reliable and cost-competitive in comparison to more traditional treatment methods. Two hurdles must be overcome to enhance bioremediation’s effectiveness and competitiveness: i) being able to degrade recalcitrant compounds, and ii) being able to control the growth rate and location of microorganisms involved in bioremediation in the subsurface. My dissertation adds foundational knowledge and engineering application on how to biodegrade recalcitrant emerging and legacy halogenated compounds. Generating biotransformation knowledge on the recalcitrant emerging contaminants called per- and polyfluoroalkyl substances (PFAS) may lead to solutions for protecting both people and the planet. In my dissertation, I analyzed PFAS biotransformation and microbial defluorination literature via meta-analytical and bibliometric methods to identify unexplored topics and experimental conditions. The metanalytical work identified trends in PFAS microbial biotransformation science to inform future experimental design. The second hurdle which must be overcome is being able to control bacterial growth in the subsurface. During bioremediation implementation microbial overgrowth may clog injection wells and the subsurface, leading to reduced porosity and treatment efficacy. Contaminant treatment schemes based on aerobic cometabolism frequently exhibit overgrowth at subsurface injection points for O2 (the electron acceptor) and a labile hydrocarbon (e.g., propane). My dissertation work experimentally evaluated acetylene as a microbial inhibitor for use in controlling microbial overgrowth during trichloroethene (TCE) aerobic cometabolism. I demonstrated that acetylene reduces the likelihood of microbial overgrowth of TCE-degrading microorganisms in soil-free microcosms and aquifer soil columns while retaining TCE degradation capacity. Cumulatively, my dissertation provides foundational knowledge for academics and bioremediation practitioners to develop robust and reliable bioremediation technologies.
ContributorsSkinner, Justin Paul (Author) / Delgado, Anca G. (Thesis advisor) / Rittmann, Bruce E (Committee member) / Chu, Min Ying Jacob (Committee member) / Arizona State University (Publisher)
Created2023
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Description
Novel means are needed to diagnose neurodegenerative diseases (NDDs) and cancer, given delays in medical diagnosis and rising rates of disease incidence, prevalence, and mortality worldwide. Development of NDDs and cancer has been linked to environmental toxins. Ensuing epigenetic changes may serve as helpful biomarkers to diagnose amyotrophic lateral sclerosis

Novel means are needed to diagnose neurodegenerative diseases (NDDs) and cancer, given delays in medical diagnosis and rising rates of disease incidence, prevalence, and mortality worldwide. Development of NDDs and cancer has been linked to environmental toxins. Ensuing epigenetic changes may serve as helpful biomarkers to diagnose amyotrophic lateral sclerosis (ALS), Parkinson’s Disease (PD), and Alzheimer’s Disease (AD) as well as various cancers sooner and more accurately. This dissertation tabulates and evaluates a spectrum of diagnostic matrixes (i.e., soil, sewage sludge, blood) and markers of disease to inform disease surveillance. A literature search using Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) and Bradford Hill criteria implicated BMAA, formaldehyde, Mn, Hg, and Zn as environmental factors with strong association to ALS risk. Another PRISMA search identified epigenetic changes (e.g., DNA methylation) in NDD patients associated with environmental toxic exposures to air pollutants, heavy metals, and organic chemicals. Of the 180 environmental toxins hypothesized to be associated with AD, PD, or ALS, four heavy metals (As, Cd, Mn, and Hg) were common to these NDDs. Sources, as well as evidence and proxies of human exposure to these heavy metals and Pb were investigated here, namely the metal industries, and metal concentrations in topsoil, sewage sludge, and blood. Concentrations of Cd and Pb in sewage sludge were found to be significantly correlated with NDD prevalence rates in co-located populations (state-level) with odds ratios of 2.91 and 4.08, respectively. Markers of exposure and disease in urine and feces were also evaluated using PRISMA, finding 73 of 94 epigenetic biomarker panels to be valid for tracking primarily gastric and urinary cancers. In all studies, geospatial analyses indicated a preference in study cohorts located in the U.S., Europe, and the northern hemisphere, leaving underserved many populous regions particularly in the southern hemisphere. This dissertation draws attention to sewage sludge as a currently underutilized proxy matrix for assessing toxic human exposures and further identified a spectrum of particularly attractive, non-invasive biomarkers for future diagnostic use to promote early detection, survivability, and quality of life of individuals at risk of NDDs and cancer.
ContributorsNewell, Melanie Engstrom (Author) / Halden, Rolf U. (Thesis advisor) / Mastroeni, Diego (Committee member) / Lee, Heewook (Committee member) / Arizona State University (Publisher)
Created2023
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Description
Wastewater-based epidemiology (WBE) has emerged as a powerful tool for community health assessment, using wastewater-borne biological and chemical markers as analytical targets. This study investigates the critical influence of sampling frequency on the resultant estimates of opioid consumption and the prevalence of SARS-CoV-2 infections at the neighborhood level using common

Wastewater-based epidemiology (WBE) has emerged as a powerful tool for community health assessment, using wastewater-borne biological and chemical markers as analytical targets. This study investigates the critical influence of sampling frequency on the resultant estimates of opioid consumption and the prevalence of SARS-CoV-2 infections at the neighborhood level using common WBE biomarkers including fentanyl, norfentanyl, and the SARS-CoV-2 N1 gene as targets. The goal was to assess sampling methodologies that include the impact of the day of the week and of the sampling frequency. Wastewater samples were collected two or three times per week over the course of five months (n=525) and analyzed by liquid chromatography-tandem mass spectrometry (LC-MS/MS) or reverse transcriptase quantitative polymerase chain reaction (RT-qPCR) for target chemical or molecular indicators of interest. Results showed no statistically significant differences for days of the week (i.e., Tuesday vs. Thursday vs. Saturday) for 24-hour composite samples analyzed for fentanyl or SARS-CoV-2; however, concentrations of the human metabolite of fentanyl, norfentanyl, were statistically different between Tuesday and Saturday (p < 0.05). When data were aggregated either by Tuesday/Thursday or Tuesday/Thursday/Saturday to examine sensitivity to sampling frequency, data were not statistically different except for the Tuesday/Thursday weekly average and Saturday for norfentanyl (p < 0.05). These results highlight how sample collection and data handling methodologies can impact wastewater-derived public health assessments. Care should be taken when selecting an approach to the sampling frequency based on the public health concerns under investigation.
ContributorsAJDINI, ARIANNA (Author) / Halden, Rolf (Thesis advisor) / Driver, Erin (Committee member) / Conroy-Ben, Otakuye (Committee member) / Arizona State University (Publisher)
Created2023
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Description
Mining-influenced water (MIW) is an acidic stream containing a typically acidic pH (e.g., 2.5), sulfate, and dissolved metal(loid)s. MIW has the potential to affect freshwater ecosystems and thus MIW requires strategies put in place for containment and treatment. Lignocellulosic sulfate-reducing biochemical reactors (SRBRs) are considered a cost-effective passive

Mining-influenced water (MIW) is an acidic stream containing a typically acidic pH (e.g., 2.5), sulfate, and dissolved metal(loid)s. MIW has the potential to affect freshwater ecosystems and thus MIW requires strategies put in place for containment and treatment. Lignocellulosic sulfate-reducing biochemical reactors (SRBRs) are considered a cost-effective passive treatment for MIW and have been documented to continuously treat MIW at the field-scale. However, long-term operation (> 1 year) and reliable MIW treatment by SRBRs at mining sites is challenged by the decline in sulfate-reduction, the key treatment mechanism for metal(loid) immobilization. This dissertation addresses operational designs and materials suited to promote sulfate reduction in lignocellulosic SRBRs treating MIW. In this dissertation I demonstrated that lignocellulosic SRBRs containing spent brewing grains and/or sugarcane bagasse can be acclimated in continuous mode at hydraulic retention times (HRTs) of 7-12 d while simultaneously removing 80 ± 20% – 91 ± 3% sulfate and > 98% metal(loid)s. Additionally, I showed that decreasing the HRT to 3 d further yields high metal(loid) removal (97.5 ± 1.3% – 98.8 ± 0.9%). Next, I verified the utility of basic oxygen furnace slag to increase MIW pH in a two-stage treatment involving a slag stage and an SRBR stage containing spent brewing grains or sugarcane bagasse. The slag reactor from the two-stage treatment increased MIW pH from 2.6 ± 0.2 to 12 ± 0.3 requiring its re-combination with fresh MIW to reduce pH to 5.0 ± 1.0 prior to entering the lignocellulosic SRBRs. The lignocellulosic SRBRs from the two-stage treatment successfully continued to remove metal(loid)s, most notably cadmium, copper, and zinc at ≥ 96%. In additions to these outcomes, I performed a metadata analysis of 27 SRBRs employing brewers spent grains, sugarcane bagasse, rice husks and rice bran, or a mixture of walnut shells, woodchips, and alfalfa. I found that sugarcane bagasse SRBRs can remove between 94 and 168 mg metal(loid) kg–1 lignocellulose d–1. In addition, Bacteroidia relative abundances showed a positive correlation with increasing sulfate removal across all 27 SRBRs and are likely essential for the degradation of lignocellulose providing electron donors for sulfate reduction. Clostridia and Gammaproteobacteria were negatively correlated with sulfate reduction in the 27 SRBRs, however SRBRs that received alkalinized MIW had lower relative abundances of Clostridia, Gammaproteobacteria, and methanogenic archaea (known competitors for sulfate-reducing bacteria). Overall, my dissertation provides insight into lignocellulosic materials and operational designs to promote long-term sulfate-reduction in lignocellulosic SRBRs treating MIW.
ContributorsMiranda, Evelyn Monica (Author) / Delgado, Anca G (Thesis advisor) / Santisteban, Leonard (Committee member) / Hamdan, Nasser (Committee member) / Rittmann, Bruce (Committee member) / Arizona State University (Publisher)
Created2023
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Description
This dissertation encompasses the interaction of antimicrobial chemicals and emerging contaminants with multi-drug resistant (MDR) bacteria and their implications in engineered systems. The aim is to investigate the effect of combination antimicrobials on MDR bacteria E. coli, evaluate the extent of synergism and antagonism of utilizing two distinct biocidal chemicals,

This dissertation encompasses the interaction of antimicrobial chemicals and emerging contaminants with multi-drug resistant (MDR) bacteria and their implications in engineered systems. The aim is to investigate the effect of combination antimicrobials on MDR bacteria E. coli, evaluate the extent of synergism and antagonism of utilizing two distinct biocidal chemicals, and evaluate the influence of endocrine-disrupting chemicals (EDCs) on protein production in response to stressors. Resistance mechanisms of bacteria such as E. coli include the use of protein systems that efflux excess nutrients or toxic compounds. These efflux proteins activate in response to environmental stressors such as contaminants and antimicrobials to varying degrees and are major contributors to antibiotic resistance in pathogenic bacteria. As is the case with engineered microbial environments, large quantities of emerging contaminants interact with bacteria, influencing antibiotic resistance and attenuation of these chemicals to an unknown degree. Interactions of antimicrobials on MDR bacteria such as E. coli have been extensively studied for pathogens, including synergistic combinations. Despite these studies in this field, a fundamental understanding of how chemicals influence antibiotic resistance in biological processes typical of engineered microbial environments is still ongoing. The impacts of EDCs on antibiotic resistance in E. coli were investigated by the characterization of synergism for antimicrobial therapies and the extrapolation of these metrics to the cycling of EDCs in engineered systems to observe the extent of antibiotic resistance proteins to the EDCs. The impact of this work provides insight into the delicate biochemistry and ongoing resistance phenomena regarding engineered systems.
ContributorsNovoa, Diego Erick (Author) / Conroy-Ben, Otakuye (Thesis advisor) / Abbazadegan, Morteza (Committee member) / Krajmalnik-Brown, Rosa (Committee member) / Arizona State University (Publisher)
Created2022
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Description
The measurement of the radiation and convection that the human body experiences are important for ensuring safety in extreme heat conditions. The radiation from the surroundings on the human body is most often measured using globe or cylindrical radiometers. The large errors stemming from differences in internal and exterior temperatures

The measurement of the radiation and convection that the human body experiences are important for ensuring safety in extreme heat conditions. The radiation from the surroundings on the human body is most often measured using globe or cylindrical radiometers. The large errors stemming from differences in internal and exterior temperatures and indirect estimation of convection can be resolved by simultaneously using three cylindrical radiometers (1 cm diameter, 9 cm height) with varying surface properties and internal heating. With three surface balances, the three unknowns (heat transfer coefficient, shortwave, and longwave radiation) can be solved for directly. As compared to integral radiation measurement technique, however, the bottom mounting using a wooden-dowel of the three-cylinder radiometers resulted in underestimated the total absorbed radiation. This first part of this thesis focuses on reducing the size of the three-cylinder radiometers and an alternative mounting that resolves the prior issues. In particular, the heat transfer coefficient in laminar wind tunnel with wind speed of 0.25 to 5 m/s is measured for six polished, heated cylinders with diameter of 1 cm and height of 1.5 to 9 cm mounted using a wooden dowel. For cylinders with height of 6 cm and above, the heat transfer coefficients are independent of the height and agree with the Hilpert correlation for infinitely long cylinder. Subsequently, a side-mounting for heated 6 cm tall cylinder with top and bottom metallic caps is developed and tested within the wind tunnel. The heat transfer coefficient is shown to be independent of the flow-side mounting and in agreement with the Hilpert correlation. The second part of this thesis explores feasibility of employing the three-cylinder concept to measuring all air-flow parameters relevant to human convection including mean wind speed, turbulence intensity and length scale. Heated cylinders with same surface properties but varying diameters are fabricated. Uniformity of their exterior temperature, which is fundamental to the three-cylinder anemometer concept, is tested during operation using infrared camera. To provide a lab-based method to measure convection from the cylinders in turbulent flow, several designs of turbulence-generating fractal grids are laser-cut and introduced into the wind tunnel.
ContributorsGupta, Mahima (Author) / Rykaczewski, Konrad (Thesis advisor) / Pathikonda, Gokul (Thesis advisor) / Middel, Ariane (Committee member) / Arizona State University (Publisher)
Created2024