Description

K-shuff is a new algorithm for comparing the similarity of gene sequence libraries, providing measures of the structural and compositional diversity as well as the significance of the differences between

K-shuff is a new algorithm for comparing the similarity of gene sequence libraries, providing measures of the structural and compositional diversity as well as the significance of the differences between these measures. Inspired by Ripley’s K-function for spatial point pattern analysis, the Intra K-function or IKF measures the structural diversity, including both the richness and overall similarity of the sequences, within a library.

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    Date Created
    • 2016-12-02
    Resource Type
  • Text
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    Identifier
    • Digital object identifier: 10.1371/journal.pone.0167634
    • Identifier Type
      International standard serial number
      Identifier Value
      1045-3830
    • Identifier Type
      International standard serial number
      Identifier Value
      1939-1560

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    Jangid, K., Kao, M., Lahamge, A., Williams, M. A., Rathbun, S. L., & Whitman, W. B. (2016). K-shuff: A Novel Algorithm for Characterizing Structural and Compositional Diversity in Gene Libraries. Plos One, 11(12). doi:10.1371/journal.pone.0167634

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