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- Creators: School of Life Sciences
Anticipatory LCA seeks to overcome the paucity of data through scenario development and thermodynamic bounding analyses. Critical components of anticipatory LCA include:
1) Laboratory-scale inventory data collection for nano-manufacturing processes and
preliminary performance evaluation.
2) Thermodynamic modeling of manufacturing processes and developing scenarios of
efficiency gains informed by analogous material processing industries.
3) Use-phase bounding to report inventory data in a functional unit descriptive of
performance.
Together, these analyses may call attention to environmentally problematic processes or nanotechnologies before significant investments in R&D and infrastructure contribute to technology lock in. The following case study applies these components of anticipatory LCA to single wall carbon nanotube (SWCNT) manufacturing processes, compares the rapid improvements in SWCNT manufacturing to historic reductions in the embodied energy of aluminum, and discusses the use of SWCNTs as free-standing anodes in advanced lithium ion batteries.
To determine if the disruption of the MMR pathway results in the reduced conservation of methylated adenines as well as an increased tolerance for mutations that result in the loss or gain of new GATC sites, we surveyed individual clones isolated from experimentally evolving wild-type and MMR-deficient (mutL- ;conferring an 150x increase in mutation rate) populations of E. coli with whole-genome sequencing. Initial analysis revealed a lack of mutations affecting methylation sites (GATC tetranucleotides) in wild-type clones. However, the inherent low mutation rates conferred by the wild-type background render this result inconclusive, due to a lack of statistical power, and reveal a need for a more direct measure of changes in methylation status. Thus as a first step to comparative methylomics, we benchmarked four different methylation-calling pipelines on three biological replicates of the wildtype progenitor strain for our evolved populations.
While it is understood that these methylated sites play a role in the MMR pathway, it is not fully understood the full extent of their effect on the genome. Thus the goal of this thesis was to better understand the forces which maintain the genome, specifically concerning m6A within the GATC motif.