Matching Items (54)
Description
Climate change has the potential to affect vegetation via changes in temperature and precipitation. In the semi-arid southwestern United States, heightened temperatures will likely lead to accelerated groundwater pumping to meet human needs, and altered storm patterns may lead to changes in flood regimes. All of these hydrologic changes have the potential to alter riparian vegetation. This research, consisting of two papers, examines relationships between hydrology and riparian vegetation along the Verde River in central Arizona, from applied and theoretical perspectives. One paper investigates how dominance of tree and shrub species and cover of certain functional groups change along hydrologic gradients. The other paper uses the Verde River flora along with that river's flood and moisture gradients to answer the question of whether functional groups can be defined universally. Drying of the Verde River would lead to a shift from cottonwood-willow streamside forest to more drought adapted desert willow or saltcedar, a decline in streamside marsh species, and decreased species richness. Effects drying will have on one dominant forest tree, velvet ash, is unclear. Increase in the frequency of large floods would potentially increase forest density and decrease average tree age and diameter. Correlations between functional traits of Verde River plants and hydrologic gradients are consistent with "leaf economics," or the axis of resource capture, use, and release, as the primary strategic trade-off for plants. This corresponds to the competitor-stress tolerator gradient in Grime's life history strategy theory. Plant height was also a strong indicator of hydrologic condition, though it is not clear from the literature if plant height is independent enough of leaf characteristics on a global scale to be considered a second axis. Though the ecohydrologic relationships are approached from different perspectives, the results of the two papers are consistent if interpreted together. The species that are currently dominant in the near-channel Verde River floodplain are tall, broad-leaf trees, and the species that are predicted to become more dominant in the case of the river drying are shorter trees or shrubs with smaller leaves. These results have implications for river and water management, as well as theoretical ecology.
ContributorsHazelton, Andrea Florence (Author) / Stromberg, Juliet C. (Thesis advisor) / Schmeeckle, Mark W (Committee member) / Franklin, Janet (Committee member) / Arizona State University (Publisher)
Created2011
Description
Two critical limitations for hyperspatial imagery are higher imagery variances and large data sizes. Although object-based analyses with a multi-scale framework for diverse object sizes are the solution, more data sources and large amounts of testing at high costs are required. In this study, I used tree density segmentation as the key element of a three-level hierarchical vegetation framework for reducing those costs, and a three-step procedure was used to evaluate its effects. A two-step procedure, which involved environmental stratifications and the random walker algorithm, was used for tree density segmentation. I determined whether variation in tone and texture could be reduced within environmental strata, and whether tree density segmentations could be labeled by species associations. At the final level, two tree density segmentations were partitioned into smaller subsets using eCognition in order to label individual species or tree stands in two test areas of two tree densities, and the Z values of Moran's I were used to evaluate whether imagery objects have different mean values from near segmentations as a measure of segmentation accuracy. The two-step procedure was able to delineating tree density segments and label species types robustly, compared to previous hierarchical frameworks. However, eCognition was not able to produce detailed, reasonable image objects with optimal scale parameters for species labeling. This hierarchical vegetation framework is applicable for fine-scale, time-series vegetation mapping to develop baseline data for evaluating climate change impacts on vegetation at low cost using widely available data and a personal laptop.
ContributorsLiau, Yan-ting (Author) / Franklin, Janet (Thesis advisor) / Turner, Billie (Committee member) / Myint, Soe (Committee member) / Arizona State University (Publisher)
Created2013
Description
In this dissertation, combined photo-induced and thermionic electron emission from low work function diamond films is studied through low energy electron spectroscopy analysis and other associated techniques. Nitrogen-doped, hydrogen-terminated diamond films prepared by the microwave plasma chemical vapor deposition method have been the most focused material. The theme of this research is represented by four interrelated issues. (1) An in-depth study describes combined photo-induced and thermionic emission from nitrogen-doped diamond films on molybdenum substrates, which were illuminated with visible light photons, and the electron emission spectra were recorded as a function of temperature. The diamond films displayed significant emissivity with a low work function of ~ 1.5 eV. The results indicate that these diamond emitters can be applied in combined solar and thermal energy conversion. (2) The nitrogen-doped diamond was further investigated to understand the physical mechanism and material-related properties that enable the combined electron emission. Through analysis of the spectroscopy, optical absorbance and photoelectron microscopy results from sample sets prepared with different configurations, it was deduced that the photo-induced electron generation involves both the ultra-nanocrystalline diamond and the interface between the diamond film and metal substrate. (3) Based on results from the first two studies, possible photon-enhanced thermionic emission was examined from nitrogen-doped diamond films deposited on silicon substrates, which could provide the basis for a novel approach for concentrated solar energy conversion. A significant increase of emission intensity was observed at elevated temperatures, which was analyzed using computer-based modeling and a combination of different emission mechanisms. (4) In addition, the electronic structure of vanadium-oxide-terminated diamond surfaces was studied through in-situ photoemission spectroscopy. Thin layers of vanadium were deposited on oxygen-terminated diamond surfaces which led to oxide formation. After thermal annealing, a negative electron affinity was found on boron-doped diamond, while a positive electron affinity was found on nitrogen-doped diamond. A model based on the barrier at the diamond-oxide interface was employed to analyze the results. Based on results of this dissertation, applications of diamond-based energy conversion devices for combined solar- and thermal energy conversion are proposed.
ContributorsSun, Tianyin (Author) / Nemanich, Robert (Thesis advisor) / Ponce, Fernando (Committee member) / Peng, Xihong (Committee member) / Spence, John (Committee member) / Treacy, Michael (Committee member) / Arizona State University (Publisher)
Created2013
Description
Species distribution modeling is used to study changes in biodiversity and species range shifts, two currently well-known manifestations of climate change. The focus of this study is to explore how distributions of suitable habitat might shift under climate change for shrub communities within the Santa Monica Mountains National Recreation Area (SMMNRA), through a comparison of community level to individual species level distribution modeling. Species level modeling is more commonly utilized, in part because community level modeling requires detailed community composition data that are not always available. However, community level modeling may better detect patterns in biodiversity. To examine the projected impact on suitable habitat in the study area, I used the MaxEnt modeling algorithm to create and evaluate species distribution models with presence only data for two future climate models at community and individual species levels. I contrasted the outcomes as a method to describe uncertainty in projected models. To derive a range of sensitivity outcomes I extracted probability frequency distributions for suitable habitat from raster grids for communities modeled directly as species groups and contrasted those with communities assembled from intersected individual species models. The intersected species models were more sensitive to climate change relative to the grouped community models. Suitable habitat in SMMNRA's bounds was projected to decline from about 30-90% for the intersected models and about 20-80% for the grouped models from its current state. Models generally captured floristic distinction between community types as drought tolerance. Overall the impact on drought tolerant communities, growing in hotter, drier habitat such as Coastal Sage Scrub, was predicted to be less than on communities growing in cooler, moister more interior habitat, such as some chaparral types. Of the two future climate change models, the wetter model projected less impact for most communities. These results help define risk exposure for communities and species in this conservation area and could be used by managers to focus vegetation monitoring tasks to detect early response to climate change. Increasingly hot and dry conditions could motivate opportunistic restoration projects for Coastal Sage Scrub, a threatened vegetation type in Southern California.
ContributorsJames, Jennifer (Author) / Franklin, Janet (Thesis advisor) / Rey, Sergio (Committee member) / Wentz, Elizabeth (Committee member) / Arizona State University (Publisher)
Created2014
Description
Climate and land use change are projected to threaten biodiversity over the coming century. However, the combined effects of these threats on biodiversity and the capacity of current conservation networks to protect species' habitat are not well understood. The goals of this study were to evaluate the effect of climate change and urban development on vegetation distribution in a Mediterranean-type ecosystem; to identify the primary source of uncertainty in suitable habitat predictions; and to evaluate how well conservation areas protect future habitat in the Southwest ecoregion of the California Floristic Province. I used a consensus-based modeling approach combining three different species distribution models to predict current and future suitable habitat for 19 plant species representing different plant functional types (PFT) defined by fire-response (obligate seeders, resprouting shrubs), and life forms (herbs, subshurbs). I also examined the response of species grouped by range sizes (large, small). I used two climate models, two emission scenarios, two thresholds, and high-resolution (90m resolution) environmental data to create a range of potential scenarios. I evaluated the effectiveness of an existing conservation network to protect suitable habitat for rare species in light of climate and land use change. The results indicate that the area of suitable habitat for each species varied depending on the climate model, emission scenario, and threshold combination. The suitable habitat for up to four species could disappear from the ecoregion, while suitable habitat for up to 15 other species could decrease under climate change conditions. The centroid of the species' suitable environmental conditions could shift up to 440 km. Large net gains in suitable habitat were predicted for a few species. The suitable habitat area for herbs has a small response to climate change, while obligate seeders could be the most affected PFT. The results indicate that the other two PFTs gain a considerable amount of suitable habitat area. Several rare species could lose suitable habitat area inside designated conservation areas while gaining suitable habitat area outside. Climate change is predicted to be more important than urban development as a driver of habitat loss for vegetation in this region in the coming century. These results indicate that regional analyses of this type are useful and necessary to understand the dynamics of drivers of change at the regional scale and to inform decision making at this scale.
ContributorsBeltrán Villarreal, Bray de Jesús (Author) / Franklin, Janet (Thesis advisor) / Fenichel, Eli P (Committee member) / Kinzig, Ann P (Committee member) / Collins, James P. (Committee member) / Arizona State University (Publisher)
Created2012
Description
Nuclear proliferation concerns have resulted in a desire for radiation detectors with superior energy resolution. In this dissertation a Monte Carlo code is developed for calculating energy resolution in gamma-ray detector materials. The effects of basic material properties such as the bandgap and plasmon resonance energy are studied using a model for inelastic electron scattering based on electron energy-loss spectra. From a simplified "toy model" for a generic material, energy resolution is found to oscillate as the plasmon resonance energy is increased, and energy resolution can also depend on the valence band width. By incorporating the model developed here as an extension of the radiation transport code Penelope, photon processes are also included. The enhanced version of Penelope is used to calculate the Fano factor and average electron-hole pair energy in semiconductors silicon, gallium arsenide, zinc telluride, and scintillators cerium fluoride and lutetium oxyorthosilicate (LSO). If the effects of the valence band density-of-states and phonon scattering are removed, the calculated energy-resolution for these materials is fairly close to that for a toy model with a uniform electron energy-loss probability density function. This implies that the details of the electron cascade may in some cases have only a marginal effect on energy resolution.
ContributorsNarayan, Raman (Author) / Rez, Peter (Thesis advisor) / Spence, John (Committee member) / Ponce, Fernando (Committee member) / Comfort, Joseph (Committee member) / Chizmeshya, Andrew (Committee member) / Arizona State University (Publisher)
Created2011
Description
X-ray free electron lasers are used in measuring diffraction patterns from nanocrystals in the 'diffract-before-destroy' mode by outrunning radiation damage. The finite-sized nanocrystals provide an opportunity to recover intensity between Bragg spots by removing the modulating function that depends on crystal shape, i.e. the transform of the crystal shape. This shape-transform dividing-out scheme for solving the phase problem has been tested using simulated examples with cubic crystals. It provides a phasing method which does not require atomic resolution data, chemical modification to the sample, or modelling based on the protein databases. It is common to find multiple structural units (e.g. molecules, in symmetry-related positions) within a single unit cell, therefore incomplete unit cells (e.g. one additional molecule) can be observed at surface layers of crystals. In this work, the effects of such incomplete unit cells on the 'dividing-out' phasing algorithm are investigated using 2D crystals within the projection approximation. It is found that the incomplete unit cells do not hinder the recovery of the scattering pattern from a single unit cell (after dividing out the shape transforms from data merged from many nanocrystals of different sizes), assuming that certain unit-cell types are preferred. The results also suggest that the dynamic range of the data is a critical issue to be resolved in order to apply the shape transform method practically.
ContributorsLiu, Haiguang (Author) / Zatsepin, Nadia (Author) / Spence, John (Author) / College of Liberal Arts and Sciences (Contributor) / Department of Physics (Contributor)
Created2014-01-01
Description
Estimating and projecting population trends using population viability analysis (PVA) are central to identifying species at risk of extinction and for informing conservation management strategies. Models for PVA generally fall within two categories, scalar (count-based) or matrix (demographic). Model structure, process error, measurement error, and time series length all have known impacts in population risk assessments, but their combined impact has not been thoroughly investigated. We tested the ability of scalar and matrix PVA models to predict percent decline over a ten-year interval, selected to coincide with the IUCN Red List criterion A. 3, using data simulated for a hypothetical, short-lived organism with a simple life-history and for a threatened snail, Tasmaphena lamproides. PVA performance was assessed across different time series lengths, population growth rates, and levels of process and measurement error. We found that the magnitude of effects of measurement error, process error, and time series length, and interactions between these, depended on context. We found that high process and measurement error reduced the reliability of both models in predicted percent decline. Both sources of error contributed strongly to biased predictions, with process error tending to contribute to the spread of predictions more than measurement error. Increasing time series length improved precision and reduced bias of predicted population trends, but gains substantially diminished for time series lengths greater than 10-15 years. The simple parameterization scheme we employed contributed strongly to bias in matrix model predictions when both process and measurement error were high, causing scalar models to exhibit similar or greater precision and lower bias than matrix models. Our study provides evidence that, for short-lived species with structured but simple life histories, short time series and simple models can be sufficient for reasonably reliable conservation decision-making, and may be preferable for population projections when unbiased estimates of vital rates cannot be obtained.
ContributorsRueda-Cediel, Pamela (Author) / Anderson, Kurt E. (Author) / Regan, Tracey J. (Author) / Franklin, Janet (Author) / Regan, Helen M. (Author) / College of Liberal Arts and Sciences (Contributor) / School of Geographical Sciences and Urban Planning (Contributor)
Created2015-07-15
Description
Aim
To establish a chronology for late Quaternary avian extinction, extirpation and persistence in the Bahamas, thereby testing the relative roles of climate change and human impact as causes of extinction.
Location
Great Abaco Island (Abaco), Bahamas, West Indies.
Methods
We analysed the resident bird community as sampled by Pleistocene (> 11.7 ka) and Holocene (< 11.7 ka) fossils. Each species was classified as extinct (lost globally), extirpated (gone from Abaco but persists elsewhere), or extant (still resident on Abaco). We compared patterns of extinction, extirpation and persistence to independent estimates of climate and sea level for glacial (late Pleistocene) and interglacial (Holocene) times.
Results
Of 45 bird species identified in Pleistocene fossils, 25 (56%) no longer occur on Abaco (21 extirpated, 4 extinct). Of 37 species recorded in Holocene deposits, 15 (14 extirpated, 1 extinct; total 41%) no longer exist on Abaco. Of the 30 extant species, 12 were recovered as both Pleistocene and Holocene fossils, as were 9 of the 30 extirpated or extinct species. Most of the extinct or extirpated species that were only recorded from Pleistocene contexts are characteristic of open habitats (pine woodlands or grasslands); several of the extirpated species are currently found only where winters are cooler than in the modern or Pleistocene Bahamas. In contrast, most of the extinct or extirpated species recorded from Holocene contexts are habitat generalists.
Main conclusions
The fossil evidence suggests two main times of late Quaternary avian extirpation and extinction in the Bahamas. The first was during the Pleistocene–Holocene transition (PHT; 15–9 ka) and was fuelled by climate change and associated changes in sea level and island area. The second took place during the late Holocene (< 4 ka, perhaps primarily < 1 ka) and can be attributed to human impact. Although some species lost during the PHT are currently found where climates are cooler and drier than in the Bahamas today, a taxonomically and ecologically diverse set of species persisted through that major climate change but did not survive the past millennium of human presence.
ContributorsSteadman, David W. (Author) / Franklin, Janet (Author) / College of Liberal Arts and Sciences (Contributor) / School of Geographical Sciences and Urban Planning (Contributor)
Created2015-03-01
Description
Serial femtosecond crystallography requires reliable and efficient delivery of fresh crystals across the beam of an X-ray free-electron laser over the course of an experiment. We introduce a double-flow focusing nozzle to meet this challenge, with significantly reduced sample consumption, while improving jet stability over previous generations of nozzles. We demonstrate its use to determine the first room-temperature structure of RNA polymerase II at high resolution, revealing new structural details. Moreover, the double flow-focusing nozzles were successfully tested with three other protein samples and the first room temperature structure of an extradiol ring-cleaving dioxygenase was solved by utilizing the improved operation and characteristics of these devices.
ContributorsOberthuer, Dominik (Author) / Knoska, Juraj (Author) / Wiedorn, Max O. (Author) / Beyerlein, Kenneth R. (Author) / Bushnell, David A. (Author) / Kovaleva, Elena G. (Author) / Heymann, Michael (Author) / Gumprecht, Lars (Author) / Kirian, Richard (Author) / Barty, Anton (Author) / Mariani, Valerio (Author) / Tolstikova, Aleksandra (Author) / Adriano, Luigi (Author) / Awel, Salah (Author) / Barthelmess, Miriam (Author) / Dorner, Katerina (Author) / Xavier, P. Lourdu (Author) / Yefanov, Oleksandr (Author) / James, Daniel (Author) / Nelson, Garrett (Author) / Wang, Dingjie (Author) / Calvey, George (Author) / Chen, Yujie (Author) / Schmidt, Andrea (Author) / Szczepek, Michael (Author) / Frielingsdorf, Stefan (Author) / Lenz, Oliver (Author) / Snell, Edward (Author) / Robinson, Philip J. (Author) / Sarler, Bozidar (Author) / Belsak, Grega (Author) / Macek, Marjan (Author) / Wilde, Fabian (Author) / Aquila, Andrew (Author) / Boutet, Sebastien (Author) / Liang, Mengning (Author) / Hunter, Mark S. (Author) / Scheerer, Patrick (Author) / Lipscomb, John D. (Author) / Weierstall, Uwe (Author) / Kornberg, Roger D. (Author) / Spence, John (Author) / Pollack, Lois (Author) / Chapman, Henry N. (Author) / Bajt, Sasa (Author) / College of Liberal Arts and Sciences (Contributor) / Department of Physics (Contributor)
Created2017-03-16