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Description
Oxidoreductases catalyze transformations important in both bioenergetics and microbial technologies. Nonetheless, questions remain about how to tune them to modulate properties such as preference for catalysis in the oxidative or reductive direction, the potential range of activity, or coupling of multiple reactions. Using protein film electrochemistry, the features that control

Oxidoreductases catalyze transformations important in both bioenergetics and microbial technologies. Nonetheless, questions remain about how to tune them to modulate properties such as preference for catalysis in the oxidative or reductive direction, the potential range of activity, or coupling of multiple reactions. Using protein film electrochemistry, the features that control these properties are defined by comparing the activities of five [FeFe]-hydrogenases and two thiosulfate reductases. Although [FeFe]-hydrogenases are largely described as hydrogen evolution catalysts, the catalytic bias of [FeFe]-hydrogenases, i.e. the ratio of maximal reductive to oxidative activities, spans more than six orders of magnitude. At one extreme, two [FeFe]-hdyrogenases, Clostridium pasteuriaunum HydAII and Clostridium symbiosum HydY, are far more active for hydrogen oxidation than hydrogen evolution. On the other extreme, Clostridium pasteurianum HydAI and Clostridium acetobutylicum HydA1 have a neutral bias, in which both proton reduction and hydrogen oxidation are efficient. By investigating a collection of site-directed mutants, it is shown that the catalytic bias of [FeFe]-hydrogenases is not trivially correlated with the identities of residues in the primary or secondary coordination sphere. On the other hand, the catalytic bias of Clostridium acetobutylicum HydAI can be modulated via mutation of an amino acid residue coordinating the terminal [FeS] cluster. Simulations suggest that this change in catalytic bias may be linked to the reduction potential of the cluster.

Two of the enzymes examined in this work, Clostridium pasteurianum HydAIII and Clostridium symbiosum HydY, display novel catalytic properties. HydY is exclusively a hydrogen oxidizing catalyst, and it couples this activity to peroxide reduction activity at a rubrerythrin center in the same enzyme. On the other hand, CpIII operates only in a narrow potential window, inactivating at oxidizing potentials. This suggests it plays a novel physiological role that has not yet been identified. Finally, the electrocatalytic properties of Pyrobaculum aerophilum thiosulfate reductase with either Mo or W in the active site are compared. In both cases, the onset of catalysis corresponds to reduction of the active site. Overall, the Mo enzyme is more active, and reduces thiosulfate with less overpotential.
ContributorsWilliams, Samuel Garrett (Author) / Jones, Anne K (Thesis advisor) / Hayes, Mark A. (Committee member) / Trovitch, Ryan J (Committee member) / Arizona State University (Publisher)
Created2020
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Description
Advanced and mature computer simulation methods exist in fluid dynamics, elec-

tromagnetics, semiconductors, chemical transport, and even chemical and material

electronic structure. However, few general or accurate methods have been developed

for quantum photonic devices. Here, a novel approach utilizing phase-space quantum

mechanics is developed to model photon transport in ring resonators, a form

Advanced and mature computer simulation methods exist in fluid dynamics, elec-

tromagnetics, semiconductors, chemical transport, and even chemical and material

electronic structure. However, few general or accurate methods have been developed

for quantum photonic devices. Here, a novel approach utilizing phase-space quantum

mechanics is developed to model photon transport in ring resonators, a form of en-

tangled pair source. The key features the model needs to illustrate are the emergence

of non-classicality and entanglement between photons due to nonlinear effects in the

ring. The quantum trajectory method is subsequently demonstrated on a sequence

of elementary models and multiple aspects of the ring resonator itself.
ContributorsWelland, Ian Matthew (Author) / Ferry, David K. (Thesis advisor) / Goodnick, Stephen (Thesis advisor) / Zhao, Yuji (Committee member) / Vasileska, Dragica (Committee member) / Arizona State University (Publisher)
Created2020
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Description
Mobile and Internet-of-Things (IoT) systems have been widely used in many aspects

of human’s life. These systems are storing and operating on more and more sensitive

data of users. Attackers may want to obtain the data to peek at users’ privacy or

pollute the data to cause system malfunction. In addition, these systems

Mobile and Internet-of-Things (IoT) systems have been widely used in many aspects

of human’s life. These systems are storing and operating on more and more sensitive

data of users. Attackers may want to obtain the data to peek at users’ privacy or

pollute the data to cause system malfunction. In addition, these systems are not

user-friendly for some people such as children, senior citizens, and visually impaired

users. Therefore, it is of cardinal significance to improve both security and usability

of mobile and IoT systems. This report consists of four parts: one automatic locking

system for mobile devices, one systematic study of security issues in crowdsourced

indoor positioning systems, one usable indoor navigation system, and practical attacks

on home alarm IoT systems.

Chapter 1 overviews the challenges and existing solutions in these areas. Chapater

2 introduces a novel system ilock which can automatically and immediately lock the

mobile devices to prevent data theft. Chapter 3 proposes attacks and countermeasures

for crowdsourced indoor positioning systems. Chapter 4 presents a context-aware indoor

navigation system which is more user-friendly for visual impaired people. Chapter

5 investigates some novel attacks on commercial home alarm systems. Chapter 6

concludes the report and discuss the future work.
ContributorsLi, Tao (Author) / Zhang, Yanchao (Thesis advisor) / Xue, Guoliang (Committee member) / Zhang, Junshan (Committee member) / Fan, Deliang (Committee member) / Arizona State University (Publisher)
Created2020
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Description
X-ray free electron lasers (XFELs) provide several orders of magnitude brighter x-rays than 3rd generation sources. However, the electron beamlines and undulator magnets required are on the scale of kilometers, costing billions of dollars with only a half dozen or so currently operating worldwide. One way to overcome these limitations

X-ray free electron lasers (XFELs) provide several orders of magnitude brighter x-rays than 3rd generation sources. However, the electron beamlines and undulator magnets required are on the scale of kilometers, costing billions of dollars with only a half dozen or so currently operating worldwide. One way to overcome these limitations is to prebunch the electron beam on the scale of the x-ray wavelength. In this paper one such scheme is discussed, which uses a nanopatterned grating called a dynamical beam stop. This uses diffraction from crystal planes of the etched portion of a grating to impart a transverse modulation which becomes a temporal modulation via an emittance exchange (EEX). To expand upon this topic, dynamical electron diffraction intensities for a 200 nm thick Si(001) unpatterned membrane are simulated via the multislice method and compared to experiment for various crystallographic orientations at MeV energies. From this as well as an analysis of the experimental inelastic plasmon diffuse scattering, it is determined that the optimal transverse modulation would be formed from a bright field image of the beam stop, with the nanopattern being etched all the way through the membrane. A model quantifying the quality of the modulation - the bunching factor - as a function of contrast and duty factor is formulated and the optimal modulation is determined analytically. A prototype beam stop is then imaged in a transmission electron microscope (TEM) at 200 KeV, with the measured bunching factor of 0.5 agreeing with the model and approaching a saturated XFEL. Using the angular spectrum method, it is determined that the spatial coherence of the MeV energy electron beam is insufficient for significant self-imaging to occur for gratings with pitches of hundreds of nanometers. Finally, the first-order EEX input requirements for the electron beam are examined in the transverse dimension as are newly proposed longitudinal requirements to compensate for lingering correlations between the initial and final longitudinal phase spaces.
ContributorsMalin, Lucas Earle (Author) / Graves, William S (Thesis advisor) / Kirian, Richard A (Committee member) / Smith, David J. (Committee member) / Spence, John C. H. (Committee member) / Arizona State University (Publisher)
Created2020
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Description
Interpersonal communications during civil infrastructure systems operation and maintenance (CIS O&M) are processes for CIS O&M participants to exchange critical information. Poor communications that provide misleading information can jeopardize CIS O&M safety and efficiency. Previous studies suggest that communication contexts and features could be indicators of communication errors and relevant

Interpersonal communications during civil infrastructure systems operation and maintenance (CIS O&M) are processes for CIS O&M participants to exchange critical information. Poor communications that provide misleading information can jeopardize CIS O&M safety and efficiency. Previous studies suggest that communication contexts and features could be indicators of communication errors and relevant CIS O&M risks. However, challenges remain for reliable prediction of communication errors to ensure CIS O&M safety and efficiency. For example, existing studies lack a systematic summarization of risky contexts and features of communication processes for predicting communication errors. Limited studies examined quantitative methods for incorporating expert opinions as constraints for reliable communication error prediction. How to examine mitigation strategies (e.g., adjustments of communication protocols) for reducing communication-related CIS O&M risks is also challenging. The main reason is the lack of causal analysis about how various factors influence the occurrences and impacts of communication errors so that engineers lack the basis for intervention.

This dissertation presents a method that integrates Bayesian Network (BN) modeling and simulation for communication-related risk prediction and mitigation. The proposed method aims at tackling the three challenges mentioned above for ensuring CIS O&M safety and efficiency. The proposed method contains three parts: 1) Communication Data Collection and Error Detection – designing lab experiments for collecting communication data in CIS O&M workflows and using the collected data for identifying risky communication contexts and features; 2) Communication Error Classification and Prediction – encoding expert knowledge as constraints through BN model updating to improve the accuracy of communication error prediction based on given communication contexts and features, and 3) Communication Risk Mitigation – carrying out simulations to adjust communication protocols for reducing communication-related CIS O&M risks.

This dissertation uses two CIS O&M case studies (air traffic control and NPP outages) to validate the proposed method. The results indicate that the proposed method can 1) identify risky communication contexts and features, 2) predict communication errors and CIS O&M risks, and 3) reduce CIS O&M risks triggered by communication errors. The author envisions that the proposed method will shed light on achieving predictive control of interpersonal communications in dynamic and complex CIS O&M.
ContributorsSun, Zhe (Author) / Tang, Pingbo (Thesis advisor) / Ayer, Steven K (Committee member) / Cooke, Nancy J. (Committee member) / Liu, Yongming (Committee member) / Arizona State University (Publisher)
Created2020
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Description
This graduate thesis explains and discusses the background, methods, limitations, and future work of developing a low-budget, variable-length, Arduino-based robotics professional development program (PDP) for middle school or high school classrooms. This graduate thesis builds on prior undergraduate thesis work and conclusions. The main conclusions from the undergraduate thesis work

This graduate thesis explains and discusses the background, methods, limitations, and future work of developing a low-budget, variable-length, Arduino-based robotics professional development program (PDP) for middle school or high school classrooms. This graduate thesis builds on prior undergraduate thesis work and conclusions. The main conclusions from the undergraduate thesis work focused on reaching a larger teacher population along with providing a more robust robot design and construction. The end goal of this graduate thesis is to develop a PDP that reaches multiple teachers, involves a more robust robot design, and lasts beyond this developmental year. There have been many similar research studies and PDPs that have been tested and analyzed but do not fit the requirements of this graduate thesis. These programs provide some guidance in the creation of a new PDP. The overall method of the graduate thesis comes in four main phases: 1) setup, 2) pre-PDP phase, 3) PDP phase, and 4) post PDP phase. The setup focused primarily on funding, IRB approval, research, timeline development, and research question creation. The pre-PDP phase focused primarily on the development of new tailored-to-teacher content, a more robust robot design, and recruitment of participants. The PDP phase primarily focused on how the teachers perform and participate in the PDP. Lastly, the post PDP phase involved data analysis along with a resource development plan. The last post-PDP step is to consolidate all of the findings in a clear, concise, and coherent format for future work.
Contributorslerner, jonah (Author) / Carberry, Adam (Thesis advisor) / Walters, Molina (Committee member) / Jordan, Shawn (Committee member) / Arizona State University (Publisher)
Created2020
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Description
Using a sample of 309 Asian American college students, the present study examined the effects of color-blind racial ideology (i.e., unawareness of blatant racial issues, unawareness of racial privilege and unawareness of institutional racism) on the link between internalization of the model minority myth (i.e., unrestricted mobility and achievement orientation)

Using a sample of 309 Asian American college students, the present study examined the effects of color-blind racial ideology (i.e., unawareness of blatant racial issues, unawareness of racial privilege and unawareness of institutional racism) on the link between internalization of the model minority myth (i.e., unrestricted mobility and achievement orientation) and psychological distress (i.e., social climate stress, interracial stress, within group stress, racism stress and achievement stress). Results primarily suggest the denial of blatant racism and racial issues (and not denial of racial privilege and institutional racism) exacerbate the effect of internalizing the model minority myth related to unrestricted mobility, while it buffers the effect of internalizing the model minority myth related to achievement orientation on race-related social stress. Also, denial of racial privilege appears to buffer the effect of internalizing the model minority myth related to unrestricted mobility and within group stress. Clinical implications and future directions for research are discussed.
ContributorsParks, Sarah (Author) / Yoo, Hyung Chol (Thesis advisor) / Spanierman, Lisa (Committee member) / Giac-Thao Tran, Alisia (Committee member) / Arizona State University (Publisher)
Created2020
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Description

This research is a comprehensive study of the sustainable modifiers for asphalt binder. It is a common practice to use modifiers to impart certain properties to asphalt binder; however, in order to facilitate the synthesis and design of highly effective sustainable modifiers, it is critical to thoroughly understand their underlying

This research is a comprehensive study of the sustainable modifiers for asphalt binder. It is a common practice to use modifiers to impart certain properties to asphalt binder; however, in order to facilitate the synthesis and design of highly effective sustainable modifiers, it is critical to thoroughly understand their underlying molecular level mechanisms in combination with micro and macro-level behavior. Therefore, this study incorporates a multi-scale approach using computational modeling and laboratory experiments to provide an in-depth understanding of the mechanisms of interaction between selected modifiers and the constituents of asphalt binder, at aged and unaged conditions. This study investigated the effect of paraffinic wax as a modifier for virgin binder in warm-mix asphalt that can reduce the environmental burden of asphalt pavements. The addition of wax was shown to reduce the viscosity of bitumen by reducing the self-interaction of asphaltene molecules and penetrating the existing nano agglomerates of asphaltenes. This study further examined how the interplay of various modifiers affects the modified binder’s thermomechanical properties. It was found that the presence of wax-based modifiers has a disrupting effect on the role of polyphosphoric acid that is another modifier of bitumen and its interactions with resin-type molecules.

This study was further extended to using nanozeolite as a mineral carrier for wax to better disperse wax in bitumen and reduce the wax's adverse effects such as physical hardening at low service temperatures and rutting at high service temperatures. This novel technique showed that using a different method of adding a modifier can help reduce the modifier's unwanted effects. It further showed that nanozeolite could carry wax-based modifiers and release them in bitumen, then acting as a scavenger for acidic compounds in the binder. This, in turn, could promote the resistance of asphalt binder to moisture damage by reducing the quantity of acidic compounds at the interface between the binder and the stone aggregates.

Furthermore, this study shows that iso-paraffin wax can reduce oxidized asphaltene molecules self-interaction and therefore, reduce the viscosity of aged bitumen while cause brittleness at low temperatures.

Additionally, a cradle to gate life-cycle assessment was performed for a new bio-modifier obtained from swine manure. This study showed that by partially replacing the bitumen with bio-binder from swine manure, the carbon footprint of the binder can be reduced by 10% in conjunction with reducing the cost and environmental impact of storing the manure in lagoons.

ContributorsSamieadel, Alireza (Author) / Fini, Elham H (Thesis advisor) / Kaloush, Kamil (Committee member) / Parrish, Kristen (Committee member) / Sharma, Brajendra Kumar (Committee member) / Parast, Mahour M (Committee member) / Arizona State University (Publisher)
Created2020
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Description

The overarching aim of this dissertation is to evaluate Geodesign as a planning approach for American Indian communities in the American Southwest. There has been a call amongst indigenous planners for a planning approach that prioritizes indigenous and community values and traditions while incorporating Western planning techniques. Case studies from

The overarching aim of this dissertation is to evaluate Geodesign as a planning approach for American Indian communities in the American Southwest. There has been a call amongst indigenous planners for a planning approach that prioritizes indigenous and community values and traditions while incorporating Western planning techniques. Case studies from communities in the Navajo Nation and the Tohono O’odham Nation are used to evaluate Geodesign because they possess sovereign powers of self-government within their reservation boundaries and have historical and technical barriers that have limited land use planning efforts. This research aimed to increase the knowledge base of indigenous planning, participatory Geographic information systems (GIS), resiliency, and Geodesign in three ways. First, the research examines how Geodesign can incorporate indigenous values within a community-based land use plan. Results showed overwhelmingly that indigenous participants felt that the resulting plan reflected their traditions and values, that the community voice was heard, and that Geodesign would be a recommended planning approach for other indigenous communities. Second, the research examined the degree in which Geodesign could incorporate local knowledge in planning and build resiliency against natural hazards such as flooding. Participants identified local hazards, actively engaged in developing strategies to mitigate flood risk, and utilized spatial assessments to plan for a more flood resilient region. Finally, the research examined the role of the planner in conducting Geodesign planning efforts and how Geodesign can empower marginalized communities to engage in the planning process using Arnstein’s ladder as an evaluation tool. Results demonstrated that outside professional planners, scientists, and geospatial analysts needed to assume the role of a facilitator, decision making resource, and a capacity builder over traditional roles of being the plan maker. This research also showed that Geodesign came much closer to meeting American Indian community expectations for public participation in decision making than previous planning efforts. This research demonstrated that Geodesign planning approaches could be utilized by American Indian communities to assume control of the planning process according to local values, traditions, and culture while meeting rigorous Western planning standards.

ContributorsDavis, Jonathan Michael (Author) / Pijawka, David (Thesis advisor) / Wentz, Elizabeth (Thesis advisor) / Hale, Michelle (Committee member) / Arizona State University (Publisher)
Created2020
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Description
A mathematical approach was developed to evaluate the resilience of coupled power-water networks using a variant of contingency analysis adapted from electric transmission studies. In particular, the “what if” scenarios explored in power systems research were extended and applied for coupled power-water network research by evaluating how stressors and failures

A mathematical approach was developed to evaluate the resilience of coupled power-water networks using a variant of contingency analysis adapted from electric transmission studies. In particular, the “what if” scenarios explored in power systems research were extended and applied for coupled power-water network research by evaluating how stressors and failures in the water network can propagate across system boundaries and into the electric network. Reduction in power system contingency reserves was the metric for determining violation of N-1 contingency reliability. Geospatial considerations were included using high-resolution, publicly available Geographic Information System data on infrastructure in the Phoenix Metropolitan Area that was used to generate a power network with 599 transmission lines and total generation capacity of 18.98 GW and a water network with 2,624 water network lines and capacity to serve up to 1.72M GPM of surface water. The steady-state model incorporated operating requirements for the power network—e.g., contingency reserves—and the water network—e.g., pressure ranges—while seeking to meet electric load and water demand. Interconnections developed between the infrastructures demonstrated how alternations to the system state and/or configuration of one network affect the other network, with results demonstrated through co-simulation of the power network and water network using OpenDSS and EPANET, respectively. Results indicate four key findings that help operators understand the interdependent behavior of the coupled power-water network: (i) two water failure scenarios (water flowing out of Waddell dam and CAP canal flowing west of Waddell dam) are critical to power-water network N-1 contingency reliability above 60% power system loading and at 100% water system demand, (ii) fast-starting natural gas generating units are necessary to maintain N-1 contingency reliability below 60% power system loading, (iii) Coolidge Station was the power plant to most frequently undergo a reduction in reserves amongst the water failure scenarios that cause a violation of N-1 reliability, (iv) power network vulnerability to water network failures was non-linear because it depends on the generating units that are dispatched, which can vary as line thermal limits or unit generation capacities are reached.
ContributorsGorman, Brandon (Author) / Johnson, Nathan G (Thesis advisor) / Seager, Thomas P (Committee member) / Chester, Mikhail V (Committee member) / Arizona State University (Publisher)
Created2020