Matching Items (18)
Filtering by

Clear all filters

Description

Agassiz’s desert tortoise (Gopherus agassizii) is a long-lived species native to the Mojave Desert and is listed as threatened under the US Endangered Species Act. To aid conservation efforts for preserving the genetic diversity of this species, we generated a whole genome reference sequence with an annotation based on dee

Agassiz’s desert tortoise (Gopherus agassizii) is a long-lived species native to the Mojave Desert and is listed as threatened under the US Endangered Species Act. To aid conservation efforts for preserving the genetic diversity of this species, we generated a whole genome reference sequence with an annotation based on deep transcriptome sequences of adult skeletal muscle, lung, brain, and blood. The draft genome assembly for G. agassizii has a scaffold N50 length of 252 kbp and a total length of 2.4 Gbp. Genome annotation reveals 20,172 protein-coding genes in the G. agassizii assembly, and that gene structure is more similar to chicken than other turtles. We provide a series of comparative analyses demonstrating (1) that turtles are among the slowest-evolving genome-enabled reptiles, (2) amino acid changes in genes controlling desert tortoise traits such as shell development, longevity and osmoregulation, and (3) fixed variants across the Gopherus species complex in genes related to desert adaptations, including circadian rhythm and innate immune response. This G. agassizii genome reference and annotation is the first such resource for any tortoise, and will serve as a foundation for future analysis of the genetic basis of adaptations to the desert environment, allow for investigation into genomic factors affecting tortoise health, disease and longevity, and serve as a valuable resource for additional studies in this species complex.

Data Availability: All genomic and transcriptomic sequence files are available from the NIH-NCBI BioProject database (accession numbers PRJNA352725, PRJNA352726, and PRJNA281763). All genome assembly, transcriptome assembly, predicted protein, transcript, genome annotation, repeatmasker, phylogenetic trees, .vcf and GO enrichment files are available on Harvard Dataverse (doi:10.7910/DVN/EH2S9K).

ContributorsTollis, Marc (Author) / DeNardo, Dale F (Author) / Cornelius, John A (Author) / Dolby, Greer A (Author) / Edwards, Taylor (Author) / Henen, Brian T. (Author) / Karl, Alice E. (Author) / Murphy, Robert W. (Author) / Kusumi, Kenro (Author)
Created2017-05-31
141150-Thumbnail Image.png
Description

Arizona State University is embracing new ways of thinking about how open stacks can make books active objects of engagement for a new generation of students, rather than risk becoming mere backdrops for study spaces. By taking a deliberate design approach to answering the question of which books and where,

Arizona State University is embracing new ways of thinking about how open stacks can make books active objects of engagement for a new generation of students, rather than risk becoming mere backdrops for study spaces. By taking a deliberate design approach to answering the question of which books and where, ASU Library seeks to position print collections as an engagement mechanism. This chapter presents the transformative potential of open stacks, along with planning for access, assessment and inclusive engagement. The authors describe how ASU Library is using a major library renovation project as a catalyst to explore these ideas, and propose a pathway to developing shared solutions for more effective use of library collections.

ContributorsMcAllister, Lorrie (Author) / Laster, Shari (Author) / Meyer, Lars (Editor)
Created2018
199-Thumbnail Image.png
Description

Powerpoint slides from Spindler's presentation at the 56th annual Arizona History Convention in Tucson, Arizona, April 24th, 2015. Details of the 1993-1995 U.S. District Court orders directing the corporate archives to Arizona State University and ASU's efforts to recover information from an obsolete digital imaging system are presented.

ContributorsSpindler, Rob (Author)
Created2015-04-24
Description
In this 25-minute presentation, I will describe how we have been helping to build an OER and Open Access awareness and adoption campaign at a large, four-year public research university. Tactics, successes, and challenges will be shared, and a conversation with participants will be engaged. I will also describe the

In this 25-minute presentation, I will describe how we have been helping to build an OER and Open Access awareness and adoption campaign at a large, four-year public research university. Tactics, successes, and challenges will be shared, and a conversation with participants will be engaged. I will also describe the successes and challenges of establishing and maintaining an open access repository for ASU researchers, as well as the library's efforts to promote OER.
ContributorsPerry, Anali Maughan (Author)
Created2016-11-02
Description

Library One Search (Summon) Usability at ASU

ContributorsAllgood, Tammy (Author) / Kush, Jordyn (Author)
Created2015-11-06
Description

Purpose: In spring of 2007, Arizona State University Libraries held a focus group of selected faculty to discover their perceptions and use of electronic books (e-books) in their research and teaching.


Methodology/approach: We employed the services of the Institute of Social Sciences Research to recruit and moderate the focus group. The

Purpose: In spring of 2007, Arizona State University Libraries held a focus group of selected faculty to discover their perceptions and use of electronic books (e-books) in their research and teaching.


Methodology/approach: We employed the services of the Institute of Social Sciences Research to recruit and moderate the focus group. The following major themes were explored:
       1) Use of e-books as textbooks.
       2) Use of e-books for personal research.
       3) Comparison between e-books and print.
       4) Disciplinary differences in perceptions of e-books.
       5) Motivators for future use

Findings: Overall, the focus group revealed that faculty had generally unsatisfactory experiences in using e-books in their research and teaching due to the unreliability of access, lack of manipulability, and the steep learning curve of the various interfaces. However, most faculty agreed that e-books would be a very viable and useful alternative if these issues were resolved.


Research limitations/implications: The focus group consisted of only six faculty members and hence is not representative of faculty as a whole. A larger survey of a more diverse faculty population would greatly serve to clarify and expand upon our findings.


Practical implications: The implications for academic libraries include providing better outreach and training to faculty about the e-book platforms offered, provide better course support, and advocate to e-book vendors to consider faculty's teaching and research needs in their product development.


Originality/value of paper: To the best knowledge of the authors, this is the first published study of faculty opinions and use of e-books utilizing focus group methodology and offers detailed information that would be useful for academic libraries and e-book vendors for evidence-based decisions.

ContributorsPerry, Anali Maughan (Author) / Carlock, Danielle (Author)
Created2008-01-29
Description

Videos are a useful and popular way to reach an audience — we all know videos that have gone viral online, garnering millions of views. However, the type of video that can compete with Old Spice commercials takes weeks to plan and produce, as well as a significant budget. Arizona

Videos are a useful and popular way to reach an audience — we all know videos that have gone viral online, garnering millions of views. However, the type of video that can compete with Old Spice commercials takes weeks to plan and produce, as well as a significant budget. Arizona State University (ASU) Libraries wanted to find a sustainable way to share videos that would require minimal staff time to create and produce.

With that goal in mind, “The Library Minute” was born. We initially envisioned a weekly newscast, but it has evolved into a successful and fun video series. Episodes have been featured in American Libraries Direct, as part of the ACRL Marketing Minute, received more than 74,000 views on YouTube and the Internet Archive, and have garnered complimentary e-mails from all over the world. Most importantly, they are a valuable marketing and outreach tool for the ASU Libraries and have increased our visibility to our students and other departments in the university.

ContributorsPerry, Anali Maughan (Author)
Created2011-05-01