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Endocrine-disrupting chemicals (EDCs) are substances that disrupt the function of the endocrine system by blocking or mimicking hormones. Over the years, these substances have been identified as responsible for producing adverse reproductive effects in freshwater vertebrate populations. Freshwater vertebrates include reptiles, amphibians, and fish living in bodies of water such

Endocrine-disrupting chemicals (EDCs) are substances that disrupt the function of the endocrine system by blocking or mimicking hormones. Over the years, these substances have been identified as responsible for producing adverse reproductive effects in freshwater vertebrate populations. Freshwater vertebrates include reptiles, amphibians, and fish living in bodies of water such as lakes or streams and are exposed when concentrations of EDCs enter their habitats. With over 800 known or potential EDCs identified, ample studies can be conducted on the effects of EDCs on freshwater vertebrates; however, studies can be costly. Since studies are costly, I have developed a methodology to prioritize EDC studies. I analyzed ten EDCs to determine their impact on freshwater vertebrates. I specified four criteria and EDCs that passed all four criteria were considered significant. The four criteria I utilized were population decreases, routes of exposure, adverse reproductive effects, and environmental persistence. I analyzed research studies as evidence for the pass or fail of each criterion, where I considered the EDC "ambiguous" if there was not enough information to make a judgment. I then assessed the research available for each EDC. Only one EDC had adequate information to pass or fail each criterion. The one with adequate information passed all criteria. Two EDCs lacked adequate information for three of the four criteria, three EDCs lacked adequate information for two of the four criteria, and four EDCs lacked adequate information for one of the four criteria. I assessed the EDCs based on whether there was adequate information available in each criterion in order to provide researchers direction for future research endeavors. The results indicate either there is much research that remains to be conducted or that researchers are not making existing results of studies available. Companies producing EDCs that are released into the environment can use the information in this report as a basis for determining strategies to minimize the impacts of EDCs on freshwater vertebrates.
ContributorsCooper, Samantha Lynn (Author) / Rittmann, Bruce (Thesis director) / Valentine, Teresa A. (Committee member) / Civil, Environmental and Sustainable Engineering Programs (Contributor) / Barrett, The Honors College (Contributor)
Created2015-05
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Description
Nitrate (NO3- ) and selenate (SeO42-) are common contaminants found in mining wastewater. Biological treatment has proved successful using bacteria capable of respiring NO3- into nitrogen gas and SeO42- into Se°. The Membrane Biofilm Reactor (MBfR) utilizes biofilm communities on the surface of hollow-fiber membranes to transform oxidized water

Nitrate (NO3- ) and selenate (SeO42-) are common contaminants found in mining wastewater. Biological treatment has proved successful using bacteria capable of respiring NO3- into nitrogen gas and SeO42- into Se°. The Membrane Biofilm Reactor (MBfR) utilizes biofilm communities on the surface of hollow-fiber membranes to transform oxidized water contaminants into innocuous reduced products. For this project, I set up two MBfRs in a lead and lag configuration to reduce NO3- [input at ~40-45 mg NO3-N/L] and SeO42- [0.62 mg/L], while avoiding sulfate (SO42-) [~1600-1660 mg/L] reduction. Over the course of three experimental phases, I controlled two operating conditions: the applied hydrogen pressure and the total electron acceptor loading. NO3- in the lead MBfR showed average reductions of 50%, 94%, and 91% for phases I, II, and III, respectively. In the lag MBfR, NO3- was reduced by 40%, 96%, and 100% for phases I, II, and III. NO2- was formed in Stage I when NO3- was not reduced completely; nevertheless NO2- accumulation was absent for the remainder of operation. In the lead MBfR, SeO42- was reduced by 65%, 87%, and 50% for phases I, II, and III. In the lag MBfR, SeO42- was reduced 60%, 27%, and 23% for phases I, II, and III. SO42- was not reduced in either MBfR. Biofilm communities were composed of denitrifying bacteria Rhodocyclales and Burkholderiales, Dechloromonas along with the well-known SeO42--reducing Thauera were abundant genera in the biofilm communities. Although SO42- reduction was suppressed, sulfate-reducing bacteria were present in the biofilm. To optimize competition for electron donor and space in the biofilm, optimal operational conditions were hydrogen pressures of 26 and 7 psig and total electron acceptor loading of 3.8 and 3.4 g H2/m2 day for the lead and lag MBfR, respectively.
ContributorsMehta, Sanya Vipul (Author) / Rittmann, Bruce (Thesis director) / Ontiveros-Valencia, Aura (Committee member) / Chemical Engineering Program (Contributor) / School of International Letters and Cultures (Contributor) / School of Life Sciences (Contributor) / Barrett, The Honors College (Contributor)
Created2016-05
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Description
Microorganisms can produce metabolites in the gut including short chain fatty acids, vitamins, and amino acids. Certain metabolites produced in the gut can affect the brain through changes in neurotransmitter concentrations. Serotonin, a neurotransmitter, is associated with mood, appetite, and sleep. Up to 90% of serotonin synthesis

Microorganisms can produce metabolites in the gut including short chain fatty acids, vitamins, and amino acids. Certain metabolites produced in the gut can affect the brain through changes in neurotransmitter concentrations. Serotonin, a neurotransmitter, is associated with mood, appetite, and sleep. Up to 90% of serotonin synthesis is located in the gut, by human enterochromaffin cells. Bacteria known to biosynthesize tryptophan, precursor to serotonin, include Escherichia coli, Enterococcus and Streptococcus. Tryptophan is synthesized by bacteria with the enzyme tryptophan synthase and requires Vitamin B6 (Pyridoxal). We hypothesize that gut isolates from surgical weight loss patients can enhance tryptophan production, which relies on vitamin B6 availability. Our goal was to isolate bacteria in order to test for tryptophan production and to determine how Vitamin B6 concentrations could affect tryptophan production. We isolated gut bacteria was from successful surgical weight loss patient with selective pressures for Enterobacter isolates and Enterococcus isolates. We tested the isolates were tested to determine if they could biosynthesize tryptophan in-vitro. Bacterial cultures were enriched with yeast and enriched with serine and indole, substrates necessary for tryptophan biosynthesis. We analyzed the supernatant samples for tryptophan production using GC-FID. Bacterial isolates most closely related to E. coli and Klebsiella based on 16S rRNA gene sequences, produced tryptophan in vitro. While under serine & indole media conditions, R1, the isolate most similar to Klebsiella produced more tryptophan than R14, the isolate most similar to E. coli. We tested the R1 isolate with a gradient of vitamin B6 concentrations from 0.02 µg/mL to 0.2 µg/mL to determine its effect on tryptophan production. When less than 0.05 µg/mL of Vitamin B6 was added, tryptophan production at 6 hours was higher than tryptophan production with Vitamin B6 concentrations at 0.05 µg/mL and above. The production and consumption of tryptophan by Klebsiella under 0 µg/mL and 0.02 µg/mL concentrations of Vitamin B6 occurred at a faster rate when compared to concentrations 0.05 µg/mL or higher of Vitamin B6.
ContributorsYee, Emily L. (Author) / Krajmalnik-Brown, Rosa (Thesis director) / Ilhan, Zehra (Committee member) / W. P. Carey School of Business (Contributor) / School of Life Sciences (Contributor) / Barrett, The Honors College (Contributor)
Created2016-05
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Description
While biodiesel production from photosynthesizing algae is a promising form of alternative energy, the process is water and nutrient intensive. I designed a mathematical model for a photobioreactor system that filters the reactor effluent and returns the permeate to the system so that unutilized nutrients are not wasted, addressing these

While biodiesel production from photosynthesizing algae is a promising form of alternative energy, the process is water and nutrient intensive. I designed a mathematical model for a photobioreactor system that filters the reactor effluent and returns the permeate to the system so that unutilized nutrients are not wasted, addressing these problems. The model tracks soluble and biomass components that govern the rates of the processes within the photobioreactor (PBR). It considers light attenuation and inhibition, nutrient limitation, preference for ammonia consumption over nitrate, production of soluble microbial products (SMP) and extracellular polymeric substance (EPS), and competition with heterotrophic bacteria that predominately consume SMP. I model a continuous photobioreactor + microfiltration system under nine unique operation conditions - three dilution rates and three recycling rates. I also evaluate the health of a PBR under different dilution rates for two values of qpred. I evaluate the success of each run by calculating values such as biomass productivity and specific biomass yield. The model shows that for low dilution rates (D = <0.2 d-1) and high recycling rates (>66%), nutrient limitation can lead to a PBR crash. In balancing biomass productivity with water conservation, the most favorable runs were those in which the dilution rate and the recycling rate were highest. In a second part of my thesis, I developed a model that describes the interactions of phototrophs and their predators. The model also shows that dilution rates corresponding to realistic PBR operation can washout predators from the system, but the simulation outputs depend heavily on the accuracy of parameters that are not well defined.
ContributorsWik, Benjamin Philip (Author) / Marcus, Andrew (Thesis director) / Rittmann, Bruce (Committee member) / School of Sustainability (Contributor) / Chemical Engineering Program (Contributor) / Barrett, The Honors College (Contributor)
Created2018-05
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Description
This report investigates the mass-transfer kinetics of gas diffusion through an asymmetrical hollow-fiber membrane developed for the membrane biofilm reactor (MBfR) when it is used to microbiologically convert syngas (a mixture of H2, CO2, and CO) to organic products. The asymmetric Matrimid® membrane had superior diffusion fluxes compared

This report investigates the mass-transfer kinetics of gas diffusion through an asymmetrical hollow-fiber membrane developed for the membrane biofilm reactor (MBfR) when it is used to microbiologically convert syngas (a mixture of H2, CO2, and CO) to organic products. The asymmetric Matrimid® membrane had superior diffusion fluxes compared to commercially available symmetric, three-layer composite and polypropylene single-layer membranes. The Matrimid® asymmetric membrane had a H2 gas-gas diffusion flux between 960- and 1600-fold greater than that of the composite membrane and between 32,000- and 46,800-fold greater than that of the single-layer membrane. Gas-gas diffusion experiments across the Matrimid® membrane also demonstrated plasticization behavior for pure CO2 and H2 gas feeds. In particular, a 10 psia increase in inlet pressure resulted in a 12-fold increase in permeance for H2 and a 16-fold increase for CO2. Plasticization was minimal for symmetric composite and single-layer membranes. Thus, diffusion fluxes were much higher for the asymmetric membrane than for the symmetric composite and single-layer membranes, and this supports the promise of the asymmetric membrane as a high-efficiency means to deliver syngas to biofilms able to convert the syngas to organic products. Gas-liquid diffusion was much slower than gas-gas diffusion, and this supports the benefit of using the MBfR approach over fermentation reactors that rely on sparging syngas.
ContributorsArafa, Omar M. (Author) / Rittmann, Bruce (Thesis director) / Torres, Cesar (Committee member) / Chemical Engineering Program (Contributor) / W.P. Carey School of Business (Contributor) / Barrett, The Honors College (Contributor)
Created2018-05
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Description
With global warming becoming a more serious problem and mankind's alarming dependency on fossil fuels, the need for a sustainable and environmentally friendly fuel source is becoming more important. Biofuels produced from photosynthetic microorganisms like algae or cyanobacteria offer a carbon neutral replacement for petroleum fuel sources; however, with the

With global warming becoming a more serious problem and mankind's alarming dependency on fossil fuels, the need for a sustainable and environmentally friendly fuel source is becoming more important. Biofuels produced from photosynthetic microorganisms like algae or cyanobacteria offer a carbon neutral replacement for petroleum fuel sources; however, with the technology and information available today, the amount of biomass that would need to be produced is not economically feasible. In this work, I examined a possible factor impacting the growth of a model cyanobacterium, Synechocystis sp. PCC6803, which is heterotrophic bacteria communities accompanying the cyanobacteria. I experimented with three variables: the type of heterotrophic bacteria strain, the initial concentration of heterotrophic bacteria, and the addition of a carbon source (glucose) to the culture. With experimental information, I identified if given conditions would increase Synechocystis growth and thus increase the yield of biomass. I found that under non-limiting growth conditions, heterotrophic bacteria do not significantly affect the growth of Synechocystis or the corresponding biomass yield. The initial concentration of heterotrophic bacteria and the added glucose also did not affect the growth of Synechocystis. I did see some nutrient recycling from the heterotrophic bacteria as the phosphate levels in the growth medium were depleted, which was apparent from prolonged growth phase and higher levels of reactive phosphate in the media.
ContributorsCahill, Brendan Robert (Author) / Rittmann, Bruce (Thesis director) / Krajmalnik-Brown, Rosa (Committee member) / W. P. Carey School of Business (Contributor) / Chemical Engineering Program (Contributor) / Barrett, The Honors College (Contributor)
Created2015-12
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Description
The need for clean fuel sources is greater than ever, as fossil fuel dependence has soared and harmful emissions are being released into the atmosphere at increasingly higher rates. A viable solution to this issue is the use of microalgae for the creation of biofuels, as it holds a high

The need for clean fuel sources is greater than ever, as fossil fuel dependence has soared and harmful emissions are being released into the atmosphere at increasingly higher rates. A viable solution to this issue is the use of microalgae for the creation of biofuels, as it holds a high concentration of lipids without requiring arable land for growth. This experiment studies downstream applications of microalgae, including how the extraction efficiency can be improved for greater lipid yield. 3-dimethyldodecylammonium propanesulfonate, myristyltrimethylammonium bromide and sodium dodecyl sulfate were used as surfactants to break down the algae cell walls and improve lipid recovery. The incubation times of the biomass in the surfactant were also studied at 0, 4.5, 24, 48 and 72 hours to more fully examine how surfactants affect the extraction of lipids. Along with this, hexane and isopropanol were used as the main extraction solvent in this experiment, but testing was done to compare these lipid yields to when ethyl acetate was used as the solvent. It was found that the MTMAB surfactant led to the greatest cell disruption, as its lipid yields were consistently higher than those of the other surfactants. Also, longer incubation times did improve the amount of lipid extracted, showing that the surfactants do have a strong effect on the cell breakdown. Finally, it was found that the ethyl acetate was a slightly more effective solvent than hexane and isopropanol in the conditions of this experiment. Overall, a stronger understanding of the wet extraction process was gained from these tests, as well as more insight into how some of the variables interact and work together during extraction.
ContributorsMartarella, Rebecca Lynne (Author) / Rittmann, Bruce (Thesis director) / Lai, Sean Yen-Jung (Committee member) / Chemical Engineering Program (Contributor) / Barrett, The Honors College (Contributor)
Created2015-12
Description

Methane (CH4) is a prominent greenhouse gas that contributes to the negative impacts of global warming and climate change, whose emissions have more than doubled since the Industrial Revolution primarily due to anthropogenic sources. The main pathways in which methane moves through the environment are methanogenesis and methanotrophy. Methane is

Methane (CH4) is a prominent greenhouse gas that contributes to the negative impacts of global warming and climate change, whose emissions have more than doubled since the Industrial Revolution primarily due to anthropogenic sources. The main pathways in which methane moves through the environment are methanogenesis and methanotrophy. Methane is primarily generated by acetoclastic methanogenesis in wetlands while it can be oxidized both aerobically and anaerobically. Wetlands are important methane emission sources at 177 - 284 Tg CH4 year-1. The Tres Rios Wetland (TRW) is a constructed facility to complete nutrient removal of treated municipal wastewater, and has shown low emissions of methane. Whether such low emissions could be achieved through active anaerobic oxidation of methane (AOM) is not known, and the main objective of this work is to evaluate the rates of AOM in TRW. In this study an isotopic method and a mass balance method were utilized to determine the rate of AOM from top sediments found at Tres Rios at various locations and in two sets of sampling. The results showed that evidence of AOM occurred in the sediments of both sampling events conducted. The first sampling set showed evidence of AOM at all locations along a transect, showing that oxidation of methane is indeed occurring in Tres Rios sediments. Evidence from both methodologies suggested that high methanogenesis rates occurred at the outside location closest to the water. The second sampling set showed that the highest rate of AOM occurred at the outlet location, with the lowest rate occurring in the middle location. DNA extractions and PCR images resulted in a poor DNA yield, and inability to extract DNA. It was determined that the isotopic approach was less accurate than the mass balance approach due to unexpected delta CH4 values. It was determined that dilutions of CH4 ppm lead to less accurate isotopic measurements needed to estimate AOM rates using a 13C pulse technique. Literature review suggests that factors including water presence, temperature, redox potential, and plant presence can be influential in the oxidation of methane. This AOM assay can be beneficial in better understanding how methane cycles at Tres Rios, and can provide opportunities for future research in determining which factors influence the oxidation of methane in different locations throughout wetlands.

ContributorsBlum, Natalie (Author) / Cadillo-Quiroz, Hinsby (Thesis director) / Rittmann, Bruce (Committee member) / Barrett, The Honors College (Contributor) / School of Sustainable Engineering & Built Envirnmt (Contributor) / School of Mathematical and Natural Sciences (Contributor)
Created2023-05
Description

Cyanobacteria and microalgae help reduce the environmental impact of human energy consumption by playing a vital role in carbon and nitrogen cycling. They are also used in various applications like biofuel production, food, medicine, and bioremediation. Understanding how these organisms respond to stress is important for efficient recovery strategies and

Cyanobacteria and microalgae help reduce the environmental impact of human energy consumption by playing a vital role in carbon and nitrogen cycling. They are also used in various applications like biofuel production, food, medicine, and bioremediation. Understanding how these organisms respond to stress is important for efficient recovery strategies and sustainable outcomes. This study investigated the effects of low-level bleaching and thermal stress on cyanobacteria and microalgae, specifically Synechocystis, Chlorella, and Scenedesmus. The role of ferroptosis, an iron-dependent form of cell death, in the degradation of cellular components under these stressors was examined. Flow cytometry and spectrophotometry were used to measure changes in cellular health and viability. The results showed that temperature influences the type of cell death mechanism and can impact photosynthetic organisms. When treated with Liproxstatin-1, an inhibitor of ferroptosis, both Synechocystis and Chlorella experienced a decrease in oxidative damage, suggesting a potential protective role for the compound. Further investigation into ferroptosis and other forms of cell death, as well as identifying additional inhibitory molecules, could lead to strategies for mitigating oxidative stress and enhancing the resilience of cyanobacteria and microalgae.

ContributorsRayes, Rammy (Author) / Rittmann, Bruce (Thesis director) / Eustance, Everett (Committee member) / Lewis, Christine (Committee member) / Khdour, Omar (Committee member) / Barrett, The Honors College (Contributor) / School of Life Sciences (Contributor)
Created2023-05
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Description

Anaerobic Digestion (AD) typically stabilizes 40-60% of influent wastewater sludge. Improving the methane yield in wastewater may produce enough energy to power some wastewater treatment processes, while the production of volatile-fatty acids (VFAs) generates economic incentives for yard waste pre-fermentation. In this research, pre-fermenters consisting of inocula composed of media;

Anaerobic Digestion (AD) typically stabilizes 40-60% of influent wastewater sludge. Improving the methane yield in wastewater may produce enough energy to power some wastewater treatment processes, while the production of volatile-fatty acids (VFAs) generates economic incentives for yard waste pre-fermentation. In this research, pre-fermenters consisting of inocula composed of media; cellulose, lantana, or grass; and rabbit cecotrope were fed various concentrations of plant matter. The contents of these pre-fermenters were the influent for respective anaerobic digesters. The microbial consortium derived for the lignocellulosic pretreatment with common yard waste in Arizona successfully increased methane production in AD, while producing additional VFAs during pretreatment in all systems. The performance of the system appeared to depend on plant matter loading and operating time, with a higher plant loading increasing the VFA production and a longer operating time increasing soluble chemical oxygen demand (COD) in pre-fermentation, and therefore the methane production in AD increased. The pre-fermenter with the highest plant matter loading and longest operating time –1.44 g plant matter per day at a 9.6% influent concentration and 193 days of total operating time– produced 10,000 mg COD/L of VFA, and its reactor produced about 460 mL methane (CH4) per day, which was almost twice the production of the control AD at 250 mL CH4 per day. This research uses yard waste that would previously be disposed of in landfill to increase valuable product production in AD. The potential value added to wastewater treatment plant (WWTP) processes by these methods could incentivize the expansion of wastewater treatment, thereby increasing sanitation access. The use of net-neutral biogas as a fuel source for WWTPs is additionally an incremental solution for reducing carbon equivalents present in the atmosphere, thereby reducing the greenhouse gas effect.

ContributorsPittman, Smith (Author) / Rittmann, Bruce (Thesis director) / Young, Michelle (Committee member) / Barrett, The Honors College (Contributor) / School of International Letters and Cultures (Contributor) / School of Sustainable Engineering & Built Envirnmt (Contributor)
Created2022-05