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Description
Trichloroethene (TCE) is a ubiquitous soil and groundwater contaminant. The most common bioremediation approach for TCE relies on the process of reductive dechlorination by Dehalococcoides mccartyi. D. mccartyi use TCE, dichloroethene, and vinyl chloride as electron acceptors and hydrogen as an electron donor. At contaminated sites, reductive dechlorination is typically promoted by adding a fermentable substrate, which is broken down to short chain fatty acids, simple alcohols, and hydrogen. This study explored microbial chain elongation (MCE), instead of fermentation, to promote TCE reductive dechlorination. In MCE, microbes use simple substrates (e.g., acetate, ethanol) to build medium chain fatty acids and also produce hydrogen during this process. Soil microcosm using TCE and acetate and ethanol as MCE substrates were established under anaerobic conditions. In soil microcosms with synthetic groundwater and natural groundwater, ethene was the main product from TCE reductive dechlorination and butyrate and hydrogen were the main products from MCE. Transfer microcosms using TCE and either acetate and ethanol, ethanol, or acetate were also established. The transfers with TCE and ethanol showed the faster rates of reductive dechlorination and produced more elongated products (i.e., hexanoate). The microbial groups enriched in the soil microcosms likely responsible for chain elongation were most similar to Clostridium genus. These investigations showed the potential for synergistic microbial chain elongation and reductive dechlorination of chlorinated ethenes.
ContributorsRobles, Aide (Author) / Delgado, Anca G. (Thesis advisor) / Torres, Cesar I. (Committee member) / van Paassen, Leon (Committee member) / Arizona State University (Publisher)
Created2019
Description
This research explores microbial chain elongation as a pathway for production of complex organic compounds in soils with implication for the carbon cycle. In chain elongation, simple substrates such as ethanol and short chain carboxylates such as acetate can be converted to longer carbon chain carboxylates under anaerobic conditions through cyclic, reverse β oxidation. This pathway elongates the carboxylate by two carbons. The chain elongation process is overall thermodynamically feasible, and microorganisms gain energy through this process. There have been limited insights into the versatility of chain elongating substrates, understanding the chain elongating microbial community, and its importance in sequestering carbon in the soils.
We used ethanol, methanol, butanol, and hydrogen as electron donors and acetate and propionate as electron acceptors to test the occurrence of microbial chain elongation in four soils with different physicochemical properties and microbial communities. Common chain elongation products were the even numbered chains butyrate, caproate, and butanol, the odd numbered carboxylates valerate and heptanoate, along with molecular hydrogen. At a near neutral pH and mesophilic temperature, we observed a stable and sustained production of longer fatty acids along with hydrogen. Microbial community analysis show phylotypes from families such as Clostridiaceae, Bacillaceae, and Ruminococcaceae in all tested conditions. Through chain elongation, the products formed are less biodegradable. They may undergo transformations and end up as organic carbon, decreasing the greenhouse gas emissions, thus, making this process important to study.
We used ethanol, methanol, butanol, and hydrogen as electron donors and acetate and propionate as electron acceptors to test the occurrence of microbial chain elongation in four soils with different physicochemical properties and microbial communities. Common chain elongation products were the even numbered chains butyrate, caproate, and butanol, the odd numbered carboxylates valerate and heptanoate, along with molecular hydrogen. At a near neutral pH and mesophilic temperature, we observed a stable and sustained production of longer fatty acids along with hydrogen. Microbial community analysis show phylotypes from families such as Clostridiaceae, Bacillaceae, and Ruminococcaceae in all tested conditions. Through chain elongation, the products formed are less biodegradable. They may undergo transformations and end up as organic carbon, decreasing the greenhouse gas emissions, thus, making this process important to study.
ContributorsJoshi, Sayalee (Author) / Delgado, Anca G (Thesis advisor) / Torres, César I (Committee member) / van Paassen, Leon (Committee member) / Arizona State University (Publisher)
Created2018
Description
Laterally-loaded short rigid drilled shaft foundations are the primary foundation used within the electric power transmission line industry. Performance of these laterally loaded foundations is dependent on modulus of the subsurface, which is directly measured by the Pressuremeter (PMT). The PMT test provides the lateral shear modulus at intermediate strains, an equivalent elastic modulus for lateral loading, which mimics the reaction of transmission line foundations within the elastic range of motion. The PMT test, however, is expensive to conduct and rarely performed. Correlations of PMT to blow counts and other index properties have been developed but these correlations have high variability and may result in unconservative foundation design. Variability in correlations is due, in part, because difference of the direction of the applied load and strain level between the correlated properties and the PMT. The geophysical shear wave velocity (S-wave velocity) as measured through refraction microtremor (ReMi) methods can be used as a measure of the small strain, shear modulus in the lateral direction. In theory, the intermediate strain modulus of the PMT is proportional to the small strain modulus of S-wave velocity. A correlation between intermediate strain and low strain moduli is developed here, based on geophysical surveys conducted at fourteen previous PMT testing locations throughout the Sonoran Desert of central Arizona. Additionally, seasonal variability in S-wave velocity of unsaturated soils is explored and impacts are identified for the use of the PMT correlation in transmission line foundation design.
ContributorsEvans, Ashley Elizabeth (Author) / Houston, Sandra (Thesis advisor) / Zapata, Claudia (Thesis advisor) / van Paassen, Leon (Committee member) / Arizona State University (Publisher)
Created2018
Description
Peatlands are a type of wetlands where the rate of accumulation of organic matter exceed the rate of decomposition and have accumulated more than 30 cm of peat (Joosten and Clark, 2002). Peatlands store approximately 30% of all terrestrial carbon as recalcitrant peat, partially decomposed plant and microbial biomass, while simultaneously producing almost 40% of the globally emitted methane (Schmidt et al., 2016), making peatlands an important component of the carbon budgets. Published research indicates that the efficiency of carbon usage among microbial communities can determine the soil-carbon response to rising temperatures (Allison et al. 2010). By determining carbon consumption in peatland soils, total community respiration response, and community structure change with additions, models of carbon use efficiency in permafrost peatlands will be well-informed and have a better understanding of how the peatlands will respond to, and utilize, increased availability of carbon compounds due to the melting permafrost. To do this, we will sequence Lutose deep core samples to observe baseline microbial community structure at different depths and different age-gradients, construct substrate incubations of glucose and propionate and observe community respiration response via a gas chromatography flame ionization detector, track the glucose and propionate additions with high-performance liquid chromatography (HPLC), and sequence the samples once more to determine if there was a deviation from the initial community structure obtained prior to the incubations. We found that our initial sequencing data was supported by previous work (Lin et al., 2014), however we were unable to sequence samples post-incubation due to time constraints. In this sequencing analysis we found that the strongest variable that made samples biologically similar was the age-gradient site in which they were extracted. We found that the group with glucose additions produced the most carbon dioxide compared with the other treatments, but was not the treatment that dominated the production of methane. Finally, in the HPLC samples that were analyzed, we found that glucose is likely forming the most by-product accumulation from mass balance calculations, while propionate is likely forming the least. Future experimentation should focus on the shortcomings of this experiment. Further analysis of 16S rRNA sequencing data from after the incubations should be analyzed to determine the change in microbial community structure throughout the experiment. Furthermore, HPLC analysis for the several samples need to be done and followed up with mass balance to determine where the added glucose and propionate are being allocated within the soil. Once these pieces of the puzzle are put into place, our original question of how the microbial community structure changes at different depths and age-gradients within permafrost peatlands will be conclusively answered.
ContributorsFrese, Alexander Nicholas (Author) / Cadillo-Quiroz, Hinsby (Thesis director) / van Paassen, Leon (Committee member) / Sarno, Analissa (Committee member) / School of Life Sciences (Contributor) / School of Mathematical and Statistical Sciences (Contributor) / Barrett, The Honors College (Contributor)
Created2018-05
Description
In this project, the potential of ferrous iron precipitation as an alternative for ground improvement applications is investigated. This study analyzes the potential of naturally occurring iron oxidation, which uses Fe2+ as an electron donor to produce Fe3+ precipitate. The goal of this study was to stimulate or accelerate the naturally occurring iron oxidation and precipitation process, to form a ferruginous crust in the subsurface, that would reduce hydraulic conductivity or increase soil strength. Iron precipitation can occur through aerobic or anaerobic iron oxidizers. Initial experimental test results in falcon tubes and a literature review showed that to obtain significant oxidation of ferrous iron and consequent precipitation of iron minerals required a buffer to prevent acidification. Experimental studies in which aerobic and anaerobic iron precipitation is stimulated in sand columns under various boundary conditions also leads to an optimization of conditions for mineralization. Mineralized zones are evaluated via permeability loss tests, extent of iron oxidized and characterization tests which show that the crust has the most concentration of precipitated iron, which can be used in targeting pollution mitigation, erosion control, etc. The results show a significant loss of permeability- by a factor of two, in high concentration of iron with a balanced buffer control. In this study, the knowledge on ground stabilization by studying the naturally occurring mechanism of iron precipitation, leading to possible industrially relevant geotechnical applications are successfully investigated.
ContributorsKanawade, Sahil (Author) / Torres, Cesar (Thesis advisor) / van Paassen, Leon (Thesis advisor) / Nielsen, David (Committee member) / Arizona State University (Publisher)
Created2021
Description
Trichloroethene (TCE) and hexavalent chromium (Cr (VI)) are ubiquitous subsurface contaminants affecting the water quality and threatening human health. Microorganisms capable of TCE and Cr (VI) reductions can be explored for bioremediation at contaminated sites. The goal of my dissertation research was to address challenges that decrease the efficiency of bioremediation in the subsurface. Specifically, I investigated strategies to (i) promote improve microbial reductive dechlorination extent through the addition of Fe0 and (ii) Cr (VI) bio-reduction through enrichment of specialized microbial consortia. Fe0 can enhance microbial TCE reduction by inducing anoxic conditions and generating H2 (electron donor). I first evaluated the effect of Fe0 on microbial reduction of TCE (with ClO4– as co-contaminant) using semi-batch soil microcosms. Results showed that high concentration of Fe0 expected during in situ remediation inhibited microbial TCE and ClO4– reduction when added together with Dehalococcoides mccartyi-containing cultures. A low concentration of aged Fe0 enhanced microbial TCE dechlorination to ethene and supported complete microbial ClO4– reduction. I then evaluated a decoupled Fe0 and biostimulation/bioaugmentation treatment approach using soil packed columns with continuous flow of groundwater. I demonstrated that microbial TCE reductive dechlorination to ethene can be benefitted by Fe0 abiotic reactions, when biostimulation and bioaugmentation are performed downstream of Fe0 addition. Furthermore, I showed that ethene production can be sustained in the presence of aerobic groundwater (after Fe0 exhaustion) by the addition of organic substrates. I hypothesized that some lessons learned from TCE Bioremediation can be applied also for other pollutants that can benefit from anaerobic reductions, like Cr (VI). Bioremediation of Cr (VI) has historically relied on biostimulation of native microbial communities, partially due to the lack of knowledge of the benefits of adding enriched consortia of specialized microorganisms (bioaugmentation). To determine the merits of a specialized consortium on bio-reduction of Cr (VI), I first enriched a culture on lactate and Cr (VI). The culture had high abundance of putative Morganella species and showed rapid and sustained Cr (VI) bio-reduction compared to a subculture grown with lactate only (without Morganella). Overall, this dissertation work documents possible strategies for synergistic abiotic and biotic chlorinated ethenes reduction, and highlights that specialized consortia may benefit Cr (VI) bio-reduction.
ContributorsMohana Rangan, Srivatsan (Author) / Krajmalnik-Brown, Rosa (Thesis advisor) / Delgado, Anca G (Thesis advisor) / Torres, César I (Committee member) / van Paassen, Leon (Committee member) / Arizona State University (Publisher)
Created2022
Description
The potential of using bio-geo-chemical processes for applications in geotechnical engineering has been widely explored in order to overcome the limitation of traditional ground improvement techniques. Biomineralization via urea hydrolysis, referred to as Microbial or Enzymatic Induced Carbonate Precipitation (MICP/EICP), has been shown to increase soil strength by stimulating precipitation of calcium carbonate minerals, bonding soil particles and filling the pores. Microbial Induced Desaturation and Precipitation (MIDP) via denitrification has also been studied for its potential to stabilize soils through mineral precipitation, but also through production of biogas, which can mitigate earthquake induced liquefaction by desaturation of the soil. Empirical relationships have been established, which relate the amount of products of these biochemical processes to the engineering properties of treated soils. However, these engineering properties may vary significantly depending on the biomineral and biogas formation mechanism and distribution patterns at pore-scale. This research focused on the pore-scale characterization of biomineral and biogas formations in porous media.
The pore-scale characteristics of calcium carbonate precipitation via EICP and biogenic gas formation via MIDP were explored by visual observation in a transparent porous media using a microfluidic chip. For this purpose, an imaging system was designed and image processing algorithms were developed to analyze the experimental images and detect the nucleation and growth of precipitated minerals and formation and migration mechanisms of gas bubbles within the microfluidic chip. Statistical analysis was performed based on the processed images to assess the evolution of biomineral size distribution, the number of precipitated minerals and the porosity reduction in time. The resulting images from the biomineralization study were used in a numerical simulation to investigate the relation between the mineral distribution, porosity-permeability relationships and process efficiency. By comparing biogenic gas production with abiotic gas production experiments, it was found that the gas formation significantly affects the gas distribution and resulting degree of saturation. The experimental results and image analysis provide insight in the kinetics of the precipitation and gas formation processes and their resulting distribution and related engineering properties.
The pore-scale characteristics of calcium carbonate precipitation via EICP and biogenic gas formation via MIDP were explored by visual observation in a transparent porous media using a microfluidic chip. For this purpose, an imaging system was designed and image processing algorithms were developed to analyze the experimental images and detect the nucleation and growth of precipitated minerals and formation and migration mechanisms of gas bubbles within the microfluidic chip. Statistical analysis was performed based on the processed images to assess the evolution of biomineral size distribution, the number of precipitated minerals and the porosity reduction in time. The resulting images from the biomineralization study were used in a numerical simulation to investigate the relation between the mineral distribution, porosity-permeability relationships and process efficiency. By comparing biogenic gas production with abiotic gas production experiments, it was found that the gas formation significantly affects the gas distribution and resulting degree of saturation. The experimental results and image analysis provide insight in the kinetics of the precipitation and gas formation processes and their resulting distribution and related engineering properties.
ContributorsKim, Daehyun (Author) / van Paassen, Leon (Thesis advisor) / Kavazanjian, Edward (Committee member) / Zapata, Claudia (Committee member) / Mahabadi, Nariman (Committee member) / Tao, Junliang (Committee member) / Jang, Jaewon (Committee member) / Arizona State University (Publisher)
Created2019
Description
Expansive soils pose considerable geotechnical and structural challenges all over the world. Many cities, towns, transport systems, and structures are built on expansive soils. This study evaluates stabilization of expansive soils using silicate solution extracted from rice husk taking advantage of an agricultural material waste. Rice husk ash production was optimized considering several factors including rinsing solution, rinsing temperature, burning time, and burning temperature. Results indicated that washing the rice husk with HCl (1M) produced an ash with surface area of 320 m2/g and 97% of silicon oxide. Two local soils were treated with sodium silicate solution, silica gel at pH 1.5, and silica gel at pH 4 to evaluate its mechanical properties at curing times of 1 day, 7 days, and 14 days. Results indicated that sodium silicate solution reduced the one-dimensional swell by 48% for Soil A, however, swell for soil B remained about the same. Silica gel at pH 1.5 reduced the one-dimensional swell by 67% for soil A and by 35% for soil B. Silica gel at pH 4 did also reduce the free swell by 40% for soil A and by 35% for soil B. Results also indicated that the swell pressures for all treated soils increased significantly compared to untreated soils. Soils treated with sodium silicate solution showed irregular compaction curves. Silica gel-treated soils showed a reduction in the maximum dry unit weight for both soils but optimum water content decreased for soil A and increased for soil B. Atterberg limits were also reduced for sodium silicate and silica gels-treated soils. Swelling index for bentonite showed a reduction by 53% for all treated bentonites. Soil-water characteristics curves (SWCC) for sodium silicate-treated soils remined almost the same as untreated soils. However, silica gels-treated soils retain more water. Surface area (SSA) decreased for sodium silicate-treated soil but increased for all silica gels-treated soils. It was concluded that curing times did not show additional improvement in most of the experiments, but the results remained about the same as 1-day treatment. The study demonstrated that silicate solution is promising and sustainable technique for stabilization of expansive soils.
Contributorsalharbi, hani (Author) / Zapata, Claudia (Thesis advisor) / Kavazanjian, Edward (Committee member) / van Paassen, Leon (Committee member) / Khodadaditirkolaei, Hamed (Committee member) / Arizona State University (Publisher)
Created2020
Description
Enzyme-induced carbonate precipitation (EICP) is an emerging technology for ground improvement that cements soil with calcium carbonate to increase strength and stiffness. EICP-improved soil can be used to support new facilities or it can be injected under existing facilities to prevent excessive deformation. The limitations for commercial adoption of EICP are the cost and the lack of implementation at field-scale. This research demonstrated two ways to reduce the cost of EICP treatment at field-scale. The first was a modification to the EICP solution such that lower amounts of chemicals are needed to achieve target strengths. The second was to use a simple and inexpensive enzyme extraction method to produce the enzyme at a large-scale. This research also involved a two-stage scale-up process to create EICP biocemented soil columns using a permeation grouting technique. The first stage was at mid-scale where 0.6 m x 0.3 m-diameter EICP biocemented soil columns were created in boxes. This work confirmed that conventional permeation grouting equipment and methods are feasible for EICP soil treatment because the columns were found to have a uniform shape, the injection method was able to deliver the EICP solution to the edges of the treatment zone, and downhole geophysics was effectively used to measure the shear wave velocity of the biocemented soil mass. The field-scale stage was performed in the Test Pit facility at the Center for Bio-mediated and Bio-inspired Geotechnics' Soils Field Laboratory. Seven biocemented soil columns were created with diameters ranging from 0.3-1 m and heights ranging from 1-2.4 m. Effective implementation at this scale was confirmed through monitoring the injection process with embedded moisture sensors, evaluating the in situ strength improvement with downhole geophysics and load testing, and testing of the excavated columns to measure shear wave velocity, dimensions, carbonate content, and strength. Lastly, a hotspot life cycle assessment was performed which identified ways to reduce the environmental impacts of EICP by using alternative sourcing of inputs and extraction of byproducts. Overall, this research project demonstrates that EICP is a viable ground improvement technique by way of successfully producing field-scale biocemented soil columns.
ContributorsMartin, Kimberly Kathryn (Author) / Kavazanjian, Jr., Edward (Thesis advisor) / Zapata, Claudia E. (Committee member) / van Paassen, Leon (Committee member) / Arizona State University (Publisher)
Created2021
Description
Bridge scour at piers is a major problem for design and for maintaining old infrastructure. The current methods require their own upkeep and there may be better ways to mitigate scour. I looked to the mangrove forests of coastal environments for inspiration and have developed a 2D model to test the efficacy of placing a mangrove-root inspired system to mitigate scour. My model tests the hydrodynamics of the root systems, but there are additional benefits that can be used as bioinspiration in the future (altering the surrounding chemistry and mechanical properties of the soil).Adding a mangrove inspired minipile system to bridge piers changes scour parameters within my 2D COMSOL models. For the volume of material added, the minipiles compare favorably to larger sacrificial piles as they reduce A_wcz and 〖τ'〗_max by similar (or even better) amounts. These two parameters are indicators of scour in the field. Within the minipile experiments, it is more beneficial to place them upstream of the main bridge pier as their own ‘mangrove forest.’ The value of A_wcz and 〖τ'〗_max for complex 2D models of scour is unclear and physical experiments need to be performed. The model geometry is based on the dimensions of the experimental flume to be used in future studies and the model results have not yet been verified through experiments and field trials. Scale effects may be present which cannot be accounted for in the 2D models. Therefore future work should be conducted to test ‘mangrove forest’ minipile systems in 3D space, in flume experiments, and in field trials.
ContributorsEnns, Andrew Carl (Author) / van Paassen, Leon (Thesis advisor) / Tao, Junliang (Thesis advisor) / Kavazanjian, Edward (Committee member) / Arizona State University (Publisher)
Created2021