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Description
Rooftop photovoltaic (PV) systems are becoming increasingly common as the efficiency of solar panels increase, the cost decreases, and worries about climate change increase and become increasingly prevalent. An under explored aspect of rooftop solar systems is the thermal effects that the systems have on the local area. These effects are investigated in this paper to determine the overall impact that solar systems have on the heating and cooling demands of a building as well as on the efficiency losses of the solar panels due to the increased temperature on the panels themselves. The specific building studied in this paper is the Goldwater Center for Science and Engineering located in the Tempe campus of Arizona State University. The ambient conditions were modeled from a typical July day in Tempe. A numerical model of a simple flat roof was also created to find the average rooftop temperature throughout the day. Through this study it was determined that solar panels cause a decrease in the maximum temperature of the rooftop during the day, while reducing the ability of the roof to be cooled during the night. The solar panels also saw a high temperature during the day during the most productive time of day for solar panels, which saw a decrease in total energy production for the panels.
ContributorsNaber, Nicholas (Author) / Huang, Huei-Ping (Thesis advisor) / Phelan, Patrick (Committee member) / Bocanegra, Luis (Committee member) / Arizona State University (Publisher)
Created2022
Description
Adsorption equilibrium is an important metric used to assess adsorbent performance for gas mixture separation processes. Gas adsorption processes such as carbon capture are becoming more urgent as climate change and global warming accelerate. To speed up and reduce the cost of research on adsorbent materials and adsorption processes, I developed an open-source Python code that generates mixed gas adsorption equilibrium data using pure gas adsorption isotherms based on the ideal adsorbed solution theory (IAST). The major efforts of this M.S. research were placed on adding additional components to the mixture models since most other publications focused on binary gas mixtures. Generated mixed-gas equilibrium data were compared to experimentally collected data in order to validate the multicomponent IAST model and to determine the accuracy of the computer codes developed in this work. Additional mixed-gas equilibrium data were then generated and analyzed for trends in the data for humid flue gas conditions, natural gas processing conditions, and hydrogen gas purification conditions. For humid flue gas conditions, neither the analyzed Mg-MOF-74 nor the Zeolite 13X were shown to be suitable for use. For natural gas processing conditions, the Zeolite 13X was determined to be a much better candidate for use than the MIL-101. For hydrogen gas purification conditions, the Zeolite 5A was determined to be a better adsorbent for use than CD-AC due to the Zeolite 5A’s much lower adsorption of H2.
ContributorsCiha, Trevor (Author) / Deng, Shuguang (Thesis advisor) / Machas, Michael (Committee member) / Huang, Huei-Ping (Committee member) / Arizona State University (Publisher)
Created2022
Description
Protein interactions with the environment are crucial for proper function, butinteraction mechanisms are not always understood. In G protein-coupled receptors
(GPCRs), cholesterol modulates the function in some, but not all, GPCRs. Coarse
grained molecular dynamics was used to determine a set of contact events for each
residue and fit to a biexponential to determine the time scale of the long contacts
observed in simulation. Several residues of interest were indicated in CCK1 R near
Y140, which is known to render CCK1 R insensitive to cholesterol when mutated to
alanine. A difference in the overall residence time between CCK1 R and its cholesterol
insensitive homologue CCK2 R was also observed, indicating the ability to predict
relative cholesterol binding for homologous proteins.
Occasionally large errors and poor fits to the data were observed, so several
improvements were made, including generalizing the model to include K exponential
components. The sets of residence times in the improved method were analyzed using
Bayesian nonparametrics, which allowed for error estimations and the classification of
contact events to the individual components. Ten residues in three GPCRs bound to
cholesterol in experimental structures had large tau. Slightly longer overall interaction
time for the cholesterol sensitive CB1 R over its insensitive homologue CB2 R was also
observed.
The interactions between the cystic fibrosis transmembrane conductance regulator
(CFTR) and GlyH-101, an open-channel blocker, were analyzed using molecular
dynamics. The results showed the bromine in GlyH-101 was in constant contact with
F337, which is just inside the extracellular gate. The simulations also showed an
insertion of GlyH-101 between TM1 and TM6 deeper than the starting binding pose.
Once inserted deeper between TMs 1 and 6, the number of persistent contacts also
increased. This proposed binding pose may help in future investigations of CFTR
and help determine an open-channel structure for the protein, which in turn may help
in the development of treatments for various medical conditions. Overall, the use
of molecular dynamics and state of the art analysis tools can be useful in the study
of membrane proteins and eventuallyin the development of treatments for ailments
stemming from their atypical function.
ContributorsSexton, Ricky (Author) / Beckstein, Oliver (Thesis advisor) / Presse, Steve (Committee member) / Ozkan, Sefika B. (Committee member) / Hariadi, Rizal (Committee member) / Arizona State University (Publisher)
Created2022
Quantum Mechanical Study of the Electronic Structure and Thermoelectric Properties of Heusler Alloys
Description
Heusler alloys were discovered in 1903, and materials with half-metallic characteristics have drawn more attention from researchers since the advances in semiconductor industry [1]. Heusler alloys have found application as spin-filters, tunnel junctions or giant magnetoresistance (GMR) devices in technological applications [1]. In this work, the electronic structures, phonon dispersion, thermal properties, and electrical conductivities of PdMnSn and six novel alloys (AuCrSn, AuMnGe, Au2MnSn, Cu2NiGe, Pd2NiGe and Pt2CoSn) along with their magnetic moments are studied using ab initio calculations to understand the roots of half-metallicity in these alloys of Heusler family. From the phonon dispersion, the thermodynamic stability of the alloys in their respective phases is assessed. Phonon modes were also used to further understand the electrical transport in the crystals of these seven alloys. This study evaluates the relationship between materials' electrical conductivity and minority-spin bandgap in the band structure, and it provides suggestions for selecting constituent elements when designing new half-metallic Heusler alloys of C1b and L21 structures.
ContributorsPatel, Deep (Author) / Zhuang, Houlong (Thesis advisor) / Solanki, Kiran (Committee member) / Huang, Huei-Ping (Committee member) / Arizona State University (Publisher)
Created2023
Description
This thesis explores a diverse array of topics related to the role of dynamic allostery in regulating protein functions. Allostery is the phenomenon where a catalytic pocket responds to perturbations caused by binding at another distant site. This response often involves a conformational change resulting in a protein function alteration. However, it is essential to note the existence of dynamic allostery mechanisms that regulate protein function without relying on conformational changes but on dynamic motions. Within this thesis, position-specific equilibrium dynamics-based metrics like Dynamic Flexibility Index and Dynamic Coupling Index are employed to quantify the contributions of specific residues to protein dynamics. I investigated the role of dynamics in protein binding of the WW domain. In particular, I focused on how the mutations of distal positions modulate the binding site dynamics. By employing Dynamic Flexibility Index, I discovered that a residue, 10T, located distally from the binding pocket, plays a significant role in the observed dynamics difference between two variants: N21 (a native folded WW domain not binding Group I peptide) and CC16_N21 (an artificial WW domain binding Group I peptide). The T10H variant, created by exchanging the position 10 residue, enhances flexibility at positions 10 and 16. Consequently, this modification has led to an enhancement in the binding function of N21, enabling it to bind to Group I peptide effectively. Moreover, I investigated the influence of dynamic allostery on protein binding specificity, specifically in the PDZ domain PSD95. To gain insights into the binding process and accurately measure binding affinity, I employed two parallel computational approaches: Adaptive BP-docking and Steered Molecular Dynamics. These methods allowed me to model the binding interactions and quantify the binding strength robustly and comprehensively. The significance of allostery can serve as foundational knowledge in Deep Learning models, enabling the efficient mapping of protein sequences to their corresponding functionalities. One particular metric, Dynamic Coupling Index asymmetry, offers valuable insights into how the three-dimensional network of interactions facilitates communication within a protein structure. Leveraging these interactions, I developed a deep neural network architecture demonstrating enhanced capability in capturing epistatic interactions within Beta-lactamase and protein G function.
ContributorsLu, Jin (Author) / Ozkan, Banu (Thesis advisor) / Mills, Jeremy (Committee member) / Hariadi, Rizal (Committee member) / Beckstein, Oliver (Committee member) / Arizona State University (Publisher)
Created2023
Description
Computing the fluid phase interfaces in multiphase flow is a challenging area of research in fluids. The Volume of Fluid andLevel Set methods are a few algorithms that have been developed for reconstructing the multiphase fluid flow interfaces.
The thesis work focuses on exploring the ability of neural networks to reconstruct the multiphase fluid flow interfaces using
a data-driven approach.
The neural network model has liquid volume fraction stencils as an input, and it predicts the radius of the circle as an
output of the network which represents a phase interface separating two immiscible fluids inside a fluid domain. The liquid
volume fraction stencils are generated for randomly varying circle radii within a 1x1 domain using an open-source VOFI
library. These datasets are used to train the neural network. Once the model is trained, the predicted circular phase
interface from the neural network output is used to generate back the predicted liquid volume fraction stencils.
Error norms values are calculated to assess the error in the neural network model’s predicted liquid volume fraction
stencils with the actual liquid volume fraction stencils from the VOFI library. The neural network parameters are optimized
by testing them for different hyper-parameters to reduce the error norms. So as to minimize the difference between the
predicted and the actual liquid volume fraction stencils and errors in reconstructing the fluid phase interface geometry.
ContributorsPawar, Pranav Rajesh (Author) / Herrmann, Marcus (Thesis advisor) / Zhuang, Houlong (Committee member) / Huang, Huei-Ping (Committee member) / Arizona State University (Publisher)
Created2023
Description
The conversion of H2S enables the recycling of a waste gas into a potential source of hydrogen at a lower thermodynamic energy cost as compared to water splitting. However, studies on the photocatalytic decomposition of H2S focus on traditional deployment of catalyst materials to facilitate this conversion, and operation only when a light source is available. In this study, the efficacy of Direct Ink Written (DIW) luminous structures for H2S conversion has been investigated, with the primary objective of sustaining H2S conversion when a light source has been terminated. Additionally, as a secondary objective, improving light distribution within monoliths for photocatalytic applications is desired. The intrinsic illumination of the 3D printed monoliths developed in this work could serve as an alternative to monolith systems that employ light transmitting fiber optic cables that have been previously proposed to improve light distribution in photocatalytic systems. The results that were obtained demonstrate that H2S favorable adsorbents, a wavelength compatible long afterglow phosphor, and a photocatalyst can form viscoelastic inks that are printable into DIW luminous monolithic contactors. Additionally, rheological, optical and porosity analyses conducted, provide design guidelines for future studies seeking to develop DIW luminous monoliths from compatible catalyst-phosphor pairs. The monoliths that were developed demonstrate not only improved conversion when exposed to light, but more significantly, extended H2S conversion from the afterglow of the monoliths when an external light source was removed. Lastly, considering growing interests in attaining a global circular economy, the techno-economic feasibility of a H2S-CO2 co-utilization plant leveraging hydrogen from H2S photocatalysis as a feed source for a downstream CO2 methanation plant has been assessed. The work provides preliminary information to guide future chemical kinetic design characteristics that are important to strive for if using H2S as a source of hydrogen in a CO2 methanation facility.
ContributorsAbdullahi, Adnan (Author) / Andino, Jean (Thesis advisor) / Phelan, Patrick (Thesis advisor) / Bhate, Dhruv (Committee member) / Wang, Robert (Committee member) / Huang, Huei-Ping (Committee member) / Arizona State University (Publisher)
Created2023
Description
A well-insulated dark conventional rooftop can be hotter than any other urban surface, including pavements. Since rooftops cover around 20 – 25% of most urban areas, their role in the urban heat island effect is significant. In general, buildings exchange heat with the surroundings in three ways: heat release from the cooling/heating system, air exchange associated with exfiltration and relief air, and heat transfer between the building envelope and surroundings. Several recent studies show that the building envelope generates more heat release into the environment than any other building component.Current advancements in material science have enabled the development of materials and coatings with very high solar reflectance and thermal emissivity, and that can alter their radiative properties based on surface temperature. This dissertation is an effort to quantify the impact of recent developments in such technologies on urban air. The current study addresses three specific unresolved topics: 1) the relative importance of rooftop solar reflectance and thermal emissivity, 2) the role of rooftop radiative properties in different climates, and 3) the impact of temperature-adaptive exterior materials/coatings on building energy savings and urban cooling. The findings from this study show that the use of rooftop materials with solar reflectance above 0.9 maintain the surface temperature below ambient air temperature most of the time, even when the materials have conventional thermal emissivity (0.9). This research has demonstrated that for hot cities, rooftops with high solar reflectance and thermal emittance maximize building energy savings and always cool the surrounding air. For moderate climate regions, high solar reflectance and low thermal emittance result in the greatest building energy cost savings. This combination of radiative properties cools the air during the daytime and warms it at night. Finally, this research found that temperature-adaptive materials could play a significant role in reducing utility costs for poorly insulated buildings, but that they heat the surrounding air in the winter, irrespective of the rooftop insulation.
Through the detailed analysis of building façade radiative properties, this dissertation offers climate-specific design guidance that can be used to simultaneously optimize energy costs while minimizing adverse warming of the surrounding environment.
ContributorsPrem Anand Jayaprabha, Jyothis Anand (Author) / Sailor, David (Thesis advisor) / Phelan, Patrick (Thesis advisor) / Huang, Huei-Ping (Committee member) / Wang, Liping (Committee member) / Yeom, Dongwoo Jason (Committee member) / Arizona State University (Publisher)
Created2022
Description
Theoretical analyses of liquid atomization (bulk to droplet conversion) and turbulence have potential to advance the computability of these flows. Instead of relying on full computations or models, fundamental conservation equations can be manipulated to generate partial or full solutions. For example, integral form of the mass and energy for spray flows leads to an explicit relationship between the drop size and liquid velocities. This is an ideal form to integrate with existing computational fluid dynamic (CFD), which is well developed to solve for the liquid velocities, i.e., the momentum equation(s). Theoretical adaption to CFD has been performed for various injection geometries, with results that compare quite well with experimental data. Since the drop size is provided analytically, computational time/cost for simulating spray flows with liquid atomization is no more than single-phase flows. Some advances have also been made on turbulent flows, by using a new set of perspectives on transport, scaling and energy distributions. Conservation equations for turbulence momentum and kinetic energy have been derived in a coordinate frame moving with the local mean velocities, which produce the Reynolds stress components, without modeling. Scaling of the Reynolds stress is also found at the first- and second-gradient levels. Finally, maximum-entropy principle has been used to derive the energy spectra in turbulent flows.
ContributorsPark, Jung Eun (Author) / Lee, Taewoo (Thesis advisor) / Gardner, Carl (Committee member) / Huang, Huei-Ping (Committee member) / Kim, Jeonglae (Committee member) / Chen, Kangping (Committee member) / Arizona State University (Publisher)
Created2022
Description
Scientists are entrusted with developing novel molecular strategies for effective prophylactic and therapeutic interventions. Antivirals are indispensable tools that can be targeted at viral domains directly or at cellular domains indirectly to obstruct viral infections and reduce pathogenicity. Despite their transformative potential in healthcare, to date, antivirals have been clinically approved to treat only 10 out of the greater than 200 known pathogenic human viruses. Additionally, as obligate intracellular parasites, many virus functions are intimately coupled with host cellular processes. As such, the development of a clinically relevant antiviral is challenged by the limited number of clear targets per virus and necessitates an extensive insight into these molecular processes. Compounding this challenge, many viral pathogens have evolved to evade effective antivirals. Therefore, a means to develop virus- or strain-specific antivirals without detailed insight into each idiosyncratic biochemical mechanism may aid in the development of antivirals against a larger swath of pathogens. Such an approach will tremendously benefit from having the specific molecular recognition of viral species as the lowest barrier. Here, I modify a nanobody (anti-green fluorescent protein) that specifically recognizes non-essential epitopes (glycoprotein M-pHluorin chimera) presented on the extra virion surface of a virus (Pseudorabies virus strain 486). The nanobody switches from having no inhibitory properties (tested up to 50 μM) to ∼3 nM IC50 in in vitro infectivity assays using porcine kidney (PK15) cells. The nanobody modifications use highly reliable bioconjugation to a three-dimensional wireframe deoxyribonucleic acid (DNA) origami scaffold. Mechanistic studies suggest that inhibition is mediated by the DNA origami scaffold bound to the virus particle, which obstructs the internalization of the viruses into cells, and that inhibition is enhanced by avidity resulting from multivalent virus and scaffold interactions. The assembled nanostructures demonstrate negligible cytotoxicity (<10 nM) and sufficient stability, further supporting their therapeutic potential. If translatable to other viral species and epitopes, this approach may open a new strategy that leverages existing infrastructures – monoclonal antibody development, phage display, and in vitro evolution - for rapidly developing novel antivirals in vivo.
ContributorsPradhan, Swechchha (Author) / Hariadi, Rizal (Thesis advisor) / Hogue, Ian (Committee member) / Varsani, Arvind (Committee member) / Chen, Qiang (Committee member) / Arizona State University (Publisher)
Created2022