Matching Items (106)
129460-Thumbnail Image.png
Description

Online social networks have become increasingly ubiquitous and understanding their structural, dynamical, and scaling properties not only is of fundamental interest but also has a broad range of applications. Such networks can be extremely dynamic, generated almost instantaneously by, for example, breaking-news items. We investigate a common class of online

Online social networks have become increasingly ubiquitous and understanding their structural, dynamical, and scaling properties not only is of fundamental interest but also has a broad range of applications. Such networks can be extremely dynamic, generated almost instantaneously by, for example, breaking-news items. We investigate a common class of online social networks, the user-user retweeting networks, by analyzing the empirical data collected from Sina Weibo (a massive twitter-like microblogging social network in China) with respect to the topic of the 2011 Japan earthquake. We uncover a number of algebraic scaling relations governing the growth and structure of the network and develop a probabilistic model that captures the basic dynamical features of the system. The model is capable of reproducing all the empirical results. Our analysis not only reveals the basic mechanisms underlying the dynamics of the retweeting networks, but also provides general insights into the control of information spreading on such networks.

ContributorsWang, Le-Zhi (Author) / Huang, Zi-Gang (Author) / Rong, Zhi-Hai (Author) / Wang, Xiao-Fan (Author) / Lai, Ying-Cheng (Author) / Ira A. Fulton Schools of Engineering (Contributor)
Created2014-11-07
129548-Thumbnail Image.png
Description

Our ability to uncover complex network structure and dynamics from data is fundamental to understanding and controlling collective dynamics in complex systems. Despite recent progress in this area, reconstructing networks with stochastic dynamical processes from limited time series remains to be an outstanding problem. Here we develop a framework based

Our ability to uncover complex network structure and dynamics from data is fundamental to understanding and controlling collective dynamics in complex systems. Despite recent progress in this area, reconstructing networks with stochastic dynamical processes from limited time series remains to be an outstanding problem. Here we develop a framework based on compressed sensing to reconstruct complex networks on which stochastic spreading dynamics take place. We apply the methodology to a large number of model and real networks, finding that a full reconstruction of inhomogeneous interactions can be achieved from small amounts of polarized (binary) data, a virtue of compressed sensing. Further, we demonstrate that a hidden source that triggers the spreading process but is externally inaccessible can be ascertained and located with high confidence in the absence of direct routes of propagation from it. Our approach thus establishes a paradigm for tracing and controlling epidemic invasion and information diffusion in complex networked systems.

ContributorsShen, Zhesi (Author) / Wang, Wen-Xu (Author) / Fan, Ying (Author) / Di, Zengru (Author) / Lai, Ying-Cheng (Author) / Ira A. Fulton Schools of Engineering (Contributor)
Created2014-07-01
Description

Background: The shift from solitary to social behavior is one of the major evolutionary transitions. Primitively eusocial bumblebees are uniquely placed to illuminate the evolution of highly eusocial insect societies. Bumblebees are also invaluable natural and agricultural pollinators, and there is widespread concern over recent population declines in some species. High-quality

Background: The shift from solitary to social behavior is one of the major evolutionary transitions. Primitively eusocial bumblebees are uniquely placed to illuminate the evolution of highly eusocial insect societies. Bumblebees are also invaluable natural and agricultural pollinators, and there is widespread concern over recent population declines in some species. High-quality genomic data will inform key aspects of bumblebee biology, including susceptibility to implicated population viability threats.

Results: We report the high quality draft genome sequences of Bombus terrestris and Bombus impatiens, two ecologically dominant bumblebees and widely utilized study species. Comparing these new genomes to those of the highly eusocial honeybee Apis mellifera and other Hymenoptera, we identify deeply conserved similarities, as well as novelties key to the biology of these organisms. Some honeybee genome features thought to underpin advanced eusociality are also present in bumblebees, indicating an earlier evolution in the bee lineage. Xenobiotic detoxification and immune genes are similarly depauperate in bumblebees and honeybees, and multiple categories of genes linked to social organization, including development and behavior, show high conservation. Key differences identified include a bias in bumblebee chemoreception towards gustation from olfaction, and striking differences in microRNAs, potentially responsible for gene regulation underlying social and other traits.

Conclusions: These two bumblebee genomes provide a foundation for post-genomic research on these key pollinators and insect societies. Overall, gene repertoires suggest that the route to advanced eusociality in bees was mediated by many small changes in many genes and processes, and not by notable expansion or depauperation.

ContributorsSadd, Ben M. (Author) / Barribeau, Seth M. (Author) / Bloch, Guy (Author) / de Graaf, Dirk C. (Author) / Dearden, Peter (Author) / Elsik, Christine G. (Author) / Gadau, Juergen (Author) / Grimmelikhuijzen, Cornelis J. P. (Author) / Hasselmann, Martin (Author) / Lozier, Jeffrey D. (Author) / Robertson, Hugh M. (Author) / Smagghe, Guy (Author) / Stolle, Eckart (Author) / Van Vaerenbergh, Matthias (Author) / Waterhouse, Robert M. (Author) / Bornberg-Bauer, Erich (Author) / Klasberg, Steffen (Author) / Bennett, Anna K. (Author) / Camara, Francisco (Author) / Guigo, Roderic (Author) / Hoff, Katharina (Author) / Mariotti, Marco (Author) / Munoz-Torres, Monica (Author) / Murphy, Terence (Author) / Santesmasses, Didac (Author) / Amdam, Gro (Author) / Beckers, Matthew (Author) / Beye, Martin (Author) / Biewer, Matthias (Author) / Bitondi, Marcia MG (Author) / Blaxter, Mark L. (Author) / Bourke, Andrew FG (Author) / Brown, Mark JF (Author) / Buechel, Severine D. (Author) / Cameron, Rossanah (Author) / Cappelle, Kaat (Author) / Carolan, James C. (Author) / Christiaens, Olivier (Author) / Ciborowski, Kate L. (Author) / Clarke, David F. (Author) / Colgan, Thomas J. (Author) / Collins, David H. (Author) / Cridge, Andrew G. (Author) / Dalmay, Tamas (Author) / Dreier, Stephanie (Author) / du Plessis, Louis (Author) / Duncan, Elizabeth (Author) / Erler, Silvio (Author) / Evans, Jay (Author) / Falcon, Talgo (Author) / Flores, Kevin (Author) / Freitas, Flavia CP (Author) / Fuchikawa, Taro (Author) / Gempe, Tanja (Author) / Hartfelder, Klaus (Author) / Hauser, Frank (Author) / Helbing, Sophie (Author) / Humann, Fernanda (Author) / Irvine, Frano (Author) / Jermiin, Lars S (Author) / Johnson, Claire E. (Author) / Johnson, Reed M (Author) / Jones, Andrew K. (Author) / Kadowaki, Tatsuhiko (Author) / Kidner, Jonathan H. (Author) / Koch, Vasco (Author) / Kohler, Arian (Author) / Kraus, F. Bernhard (Author) / Lattorff, H. Michael G. (Author) / Leask, Megan (Author) / Lockett, Gabrielle A. (Author) / Mallon, Eamonn B. (Author) / Marco Antonio, David S. (Author) / Marxer, Monika (Author) / Meeus, Ivan (Author) / Moritz, Robin FA (Author) / Nair, Ajay (Author) / Napflin, Kathrin (Author) / Nissen, Inga (Author) / Niu, Jinzhi (Author) / Nunes, Francis MF (Author) / Oakeshott, John G. (Author) / Osborne, Amy (Author) / Otte, Marianne (Author) / Pinheiro, Daniel G. (Author) / Rossie, Nina (Author) / Rueppell, Olav (Author) / Santos, Carolina G (Author) / Schmid-Hempel, Regula (Author) / Schmitt, Bjorn D. (Author) / Schulte, Christina (Author) / Simoes, Zila LP (Author) / Soares, Michelle PM (Author) / Swevers, Luc (Author) / Winnebeck, Eva C. (Author) / Wolschin, Florian (Author) / Yu, Na (Author) / Zdobnov, Evgeny M (Author) / Aqrawi, Peshtewani K (Author) / Blakenburg, Kerstin P (Author) / Coyle, Marcus (Author) / Francisco, Liezl (Author) / Hernandez, Alvaro G. (Author) / Holder, Michael (Author) / Hudson, Matthew E. (Author) / Jackson, LaRonda (Author) / Jayaseelan, Joy (Author) / Joshi, Vandita (Author) / Kovar, Christie (Author) / Lee, Sandra L. (Author) / Mata, Robert (Author) / Mathew, Tittu (Author) / Newsham, Irene F. (Author) / Ngo, Robin (Author) / Okwuonu, Geoffrey (Author) / Pham, Christopher (Author) / Pu, Ling-Ling (Author) / Saada, Nehad (Author) / Santibanez, Jireh (Author) / Simmons, DeNard (Author) / Thornton, Rebecca (Author) / Venkat, Aarti (Author) / Walden, Kimberly KO (Author) / Wu, Yuan-Qing (Author) / Debyser, Griet (Author) / Devreese, Bart (Author) / Asher, Claire (Author) / Blommaert, Julie (Author) / Chipman, Ariel D. (Author) / Chittka, Lars (Author) / Fouks, Bertrand (Author) / Liu, Jisheng (Author) / O'Neill, Meaghan P (Author) / Sumner, Seirian (Author) / Puiu, Daniela (Author) / Qu, Jiaxin (Author) / Salzberg, Steven L (Author) / Scherer, Steven E (Author) / Muzny, Donna M. (Author) / Richards, Stephen (Author) / Robinson, Gene E (Author) / Gibbs, Richard A. (Author) / Schmid-Hempel, Paul (Author) / Worley, Kim C (Author) / College of Liberal Arts and Sciences (Contributor)
Created2015-04-24
129233-Thumbnail Image.png
Description

Most previous works on complete synchronization of chaotic oscillators focused on the one-channel interaction scheme where the oscillators are coupled through only one variable or a symmetric set of variables. Using the standard framework of master-stability function (MSF), we investigate the emergence of complex synchronization behaviors under all possible configurations

Most previous works on complete synchronization of chaotic oscillators focused on the one-channel interaction scheme where the oscillators are coupled through only one variable or a symmetric set of variables. Using the standard framework of master-stability function (MSF), we investigate the emergence of complex synchronization behaviors under all possible configurations of two-channel coupling, which include, for example, all possible cross coupling schemes among the dynamical variables. Utilizing the classic Rössler and Lorenz oscillators, we find a rich variety of synchronization phenomena not present in any previously extensively studied, single-channel coupling configurations. For example, in many cases two coupling channels can enhance or even generate synchronization where there is only weak or no synchronization under only one coupling channel, which has been verified in a coupled neuron system. There are also cases where the oscillators are originally synchronized under one coupling channel, but an additional synchronizable coupling channel can, however, destroy synchronization. Direct numerical simulations of actual synchronization dynamics verify the MSF-based predictions. Our extensive computation and heuristic analysis provide an atlas for synchronization of chaotic oscillators coupled through two channels, which can be used as a systematic reference to facilitate further research in this area.

ContributorsYang, Wenchao (Author) / Huang, Zi-Gang (Author) / Wang, Xingang (Author) / Huang, Liang (Author) / Yang, Lei (Author) / Lai, Ying-Cheng (Author) / Ira A. Fulton Schools of Engineering (Contributor)
Created2015-02-18
154246-Thumbnail Image.png
Description
The power of science lies in its ability to infer and predict the

existence of objects from which no direct information can be obtained

experimentally or observationally. A well known example is to

ascertain the existence of black holes of various masses in different

parts of the universe from indirect evidence, such as X-ray

The power of science lies in its ability to infer and predict the

existence of objects from which no direct information can be obtained

experimentally or observationally. A well known example is to

ascertain the existence of black holes of various masses in different

parts of the universe from indirect evidence, such as X-ray emissions.

In the field of complex networks, the problem of detecting

hidden nodes can be stated, as follows. Consider a network whose

topology is completely unknown but whose nodes consist of two types:

one accessible and another inaccessible from the outside world. The

accessible nodes can be observed or monitored, and it is assumed that time

series are available from each node in this group. The inaccessible

nodes are shielded from the outside and they are essentially

``hidden.'' The question is, based solely on the

available time series from the accessible nodes, can the existence and

locations of the hidden nodes be inferred? A completely data-driven,

compressive-sensing based method is developed to address this issue by utilizing

complex weighted networks of nonlinear oscillators, evolutionary game

and geospatial networks.

Both microbes and multicellular organisms actively regulate their cell

fate determination to cope with changing environments or to ensure

proper development. Here, the synthetic biology approaches are used to

engineer bistable gene networks to demonstrate that stochastic and

permanent cell fate determination can be achieved through initializing

gene regulatory networks (GRNs) at the boundary between dynamic

attractors. This is experimentally realized by linking a synthetic GRN

to a natural output of galactose metabolism regulation in yeast.

Combining mathematical modeling and flow cytometry, the

engineered systems are shown to be bistable and that inherent gene expression

stochasticity does not induce spontaneous state transitioning at

steady state. By interfacing rationally designed synthetic

GRNs with background gene regulation mechanisms, this work

investigates intricate properties of networks that illuminate possible

regulatory mechanisms for cell differentiation and development that

can be initiated from points of instability.
ContributorsSu, Ri-Qi (Author) / Lai, Ying-Cheng (Thesis advisor) / Wang, Xiao (Thesis advisor) / Bliss, Daniel (Committee member) / Tepedelenlioğlu, Cihan (Committee member) / Arizona State University (Publisher)
Created2015
190809-Thumbnail Image.png
Description
Nonlinear responses in the dynamics of climate system could be triggered by small change of forcing. Interactions between different components of Earth’s climate system are believed to cause abrupt and catastrophic transitions, of which anthropogenic forcing is a major and the most irreversible driver. Meantime, in the face of global

Nonlinear responses in the dynamics of climate system could be triggered by small change of forcing. Interactions between different components of Earth’s climate system are believed to cause abrupt and catastrophic transitions, of which anthropogenic forcing is a major and the most irreversible driver. Meantime, in the face of global climate change, extreme climatic events, such as extreme precipitations, heatwaves, droughts, etc., are projected to be more frequent, more intense, and longer in duration. These nonlinear responses in climate dynamics from tipping points to extreme events pose serious threats to human society on a large scale. Understanding the physical mechanisms behind them has potential to reduce related risks through different ways. The overarching objective of this dissertation is to quantify complex interactions, detect tipping points, and explore propagations of extreme events in the hydroclimate system from a new structure-based perspective, by integrating climate dynamics, causal inference, network theory, spectral analysis, and machine learning. More specifically, a network-based framework is developed to find responses of hydroclimate system to potential critical transitions in climate. Results show that system-based early warning signals towards tipping points can be located successfully, demonstrated by enhanced connections in the network topology. To further evaluate the long-term nonlinear interactions among the U.S. climate regions, causality inference is introduced and directed complex networks are constructed from climatology records over one century. Causality networks reveal that the Ohio valley region acts as a regional gateway and mediator to the moisture transport and thermal transfer in the U.S. Furthermore, it is found that cross-regional causality variability manifests intrinsic frequency ranging from interannual to interdecadal scales, and those frequencies are associated with the physics of climate oscillations. Besides the long-term climatology, this dissertation also aims to explore extreme events from the system-dynamic perspective, especially the contributions of human-induced activities to propagation of extreme heatwaves in the U.S. cities. Results suggest that there are long-range teleconnections among the U.S. cities and supernodes in heatwave spreading. Findings also confirm that anthropogenic activities contribute to extreme heatwaves by the fact that causality during heatwaves is positively associated with population in megacities.
ContributorsYang, Xueli (Author) / Yang, Zhihua (Thesis advisor) / Lai, Ying-Cheng (Committee member) / Li, Qi (Committee member) / Xu, Tianfang (Committee member) / Zeng, Ruijie (Committee member) / Arizona State University (Publisher)
Created2023