Matching Items (317)
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Description
The power of science lies in its ability to infer and predict the

existence of objects from which no direct information can be obtained

experimentally or observationally. A well known example is to

ascertain the existence of black holes of various masses in different

parts of the universe from indirect evidence, such as X-ray

The power of science lies in its ability to infer and predict the

existence of objects from which no direct information can be obtained

experimentally or observationally. A well known example is to

ascertain the existence of black holes of various masses in different

parts of the universe from indirect evidence, such as X-ray emissions.

In the field of complex networks, the problem of detecting

hidden nodes can be stated, as follows. Consider a network whose

topology is completely unknown but whose nodes consist of two types:

one accessible and another inaccessible from the outside world. The

accessible nodes can be observed or monitored, and it is assumed that time

series are available from each node in this group. The inaccessible

nodes are shielded from the outside and they are essentially

``hidden.'' The question is, based solely on the

available time series from the accessible nodes, can the existence and

locations of the hidden nodes be inferred? A completely data-driven,

compressive-sensing based method is developed to address this issue by utilizing

complex weighted networks of nonlinear oscillators, evolutionary game

and geospatial networks.

Both microbes and multicellular organisms actively regulate their cell

fate determination to cope with changing environments or to ensure

proper development. Here, the synthetic biology approaches are used to

engineer bistable gene networks to demonstrate that stochastic and

permanent cell fate determination can be achieved through initializing

gene regulatory networks (GRNs) at the boundary between dynamic

attractors. This is experimentally realized by linking a synthetic GRN

to a natural output of galactose metabolism regulation in yeast.

Combining mathematical modeling and flow cytometry, the

engineered systems are shown to be bistable and that inherent gene expression

stochasticity does not induce spontaneous state transitioning at

steady state. By interfacing rationally designed synthetic

GRNs with background gene regulation mechanisms, this work

investigates intricate properties of networks that illuminate possible

regulatory mechanisms for cell differentiation and development that

can be initiated from points of instability.
ContributorsSu, Ri-Qi (Author) / Lai, Ying-Cheng (Thesis advisor) / Wang, Xiao (Thesis advisor) / Bliss, Daniel (Committee member) / Tepedelenlioğlu, Cihan (Committee member) / Arizona State University (Publisher)
Created2015
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Description

Background: Household activities are responsible for up to 80% of direct and indirect greenhouse gas emissions in the United States. These greenhouse gas emissions come from activities including actions taken in relation to food, energy, and water (FEW) resource consumption. Therefore, actions taken at a household level have the potential

Background: Household activities are responsible for up to 80% of direct and indirect greenhouse gas emissions in the United States. These greenhouse gas emissions come from activities including actions taken in relation to food, energy, and water (FEW) resource consumption. Therefore, actions taken at a household level have the potential to significantly reduce greenhouse gas emissions. A game-based learning approach can be used to educate youth on what actions they can take around their household to reduce their carbon footprint. <br/>Aim: FEWS for change is a first player role-playing game developed to educate high school students on how their actions impact the FEW resources and carbon emissions. The game also aims to measure how player’s beliefs and worldview effect their game play regarding sustainability and the environment. <br/>Methods: We developed the FEWS (Food, Energy, and Water Systems) for Change role-playing game based on transdisciplinary research of the food, energy, and water nexus, social, economic, and environmental factors. We piloted the game with a few students for initial results and will have a high school classroom pilot the game in mid-May.<br/>Preliminary Results: Results from the 4 participants demonstrated achievement of the learning goal of the pilot testing. This is objective was met by measuring the players improvement on the postsurvey compared to the presurvey. Due to limitations of time and virtual facilitation of this game, the other two learning objectives could not be measured in this initial pilot because not all post-game activities were included which are needed to measure the other learning objectives. When the game is piloted in mid-May, the other two learning objectives will be tested and measured.

ContributorsFielding, Raven (Author) / Agusdinata, Datu Buyung (Thesis director) / Lukosch, Heide (Committee member) / School of Sustainability (Contributor, Contributor) / Dean, W.P. Carey School of Business (Contributor) / College of Integrative Sciences and Arts (Contributor) / Barrett, The Honors College (Contributor)
Created2021-05
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Description

Background: Recurrent glioblastoma (GBM) is resistant to available treatments and continued growth of the tumor is inevitable; this process is facilitated by the expression of genes regulated by the Signal Transducer and Activator of Transcription (STAT) family of transcription factors, namely STAT5, active in the invasive rim of GBM tumors.

Background: Recurrent glioblastoma (GBM) is resistant to available treatments and continued growth of the tumor is inevitable; this process is facilitated by the expression of genes regulated by the Signal Transducer and Activator of Transcription (STAT) family of transcription factors, namely STAT5, active in the invasive rim of GBM tumors. Currently, there are no targeted therapies for recurrent GBM that increase the overall patient survival rate. This study aims to analyze the differential expression of genes regulated by STAT5 between primary and recurrent GBM.<br/>Methods: Analysis of whole exome and RNA sequencing were performed on matched bulk primary and multiple recurrent tumor samples from GBM patients who received the current standard care to determine significant changes in gene expression of STAT3/5 targets. <br/>Results: Statistical analysis reveals a decrease in Synaptotagmin 2 (SYT2) and Pleckstrin Homology Domain Containing A3 (PLEKHA3) at recurrence, previously identified as potential STAT5 targets. <br/>Conclusions: To get a better understanding of the roles of STAT5 in GBM recurrence, their downstream effects need to be better understood. The transcriptomic program initiated by STAT5 activation is distinct from that of STAT3 activation. The roles of STAT5 target genes in GBM are poorly characterized, so further research should focus on understanding the effects of altered expression of these genes as they relate to STAT3/5 in GBM recurrence.

ContributorsPennett, Maya E (Author) / Martin, Thomas W. (Thesis director) / Tran, Nhan L. (Committee member) / Blomquist, Mylan (Committee member) / College of Integrative Sciences and Arts (Contributor) / Barrett, The Honors College (Contributor)
Created2021-05
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Description

Since nitrogen (N) is often limiting in permafrost soils, we investigated the N[subscript 2]-fixing genetic potential and the inferred taxa harboring those genes by sequencing nifH gene fragments in samples taken along a permafrost thaw gradient in an Alaskan boreal soil. Samples from minimally, moderately and extensively thawed sites were

Since nitrogen (N) is often limiting in permafrost soils, we investigated the N[subscript 2]-fixing genetic potential and the inferred taxa harboring those genes by sequencing nifH gene fragments in samples taken along a permafrost thaw gradient in an Alaskan boreal soil. Samples from minimally, moderately and extensively thawed sites were taken to a depth of 79 cm to encompass zones above and below the depth of the water table. NifH reads were translated with frameshift correction and 112,476 sequences were clustered at 5% amino acid dissimilarity resulting in 1,631 OTUs. Sample depth in relation to water table depth was correlated to differences in the NifH sequence classes with those most closely related to group I nifH-harboring Alpha- and Beta-Proteobacteria in higher abundance above water table depth while those related to group III nifH-harboring Delta Proteobacteria more abundant below. The most dominant below water table depth NifH sequences, comprising 1/3 of the total, were distantly related to Verrucomicrobia-Opitutaceae. Overall, these results suggest that permafrost thaw alters the class-level composition of N[subscript 2]-fixing communities in the thawed soil layers and that this distinction corresponds to the depth of the water table. These nifH data were also compared to nifH sequences obtained from a study at an Alaskan taiga site, and to those of other geographically distant, non-permafrost sites. The two Alaska sites were differentiated largely by changes in relative abundances of the same OTUs, whereas the non-Alaska sites were differentiated by the lack of many Alaskan OTUs, and the presence of unique halophilic, sulfate- and iron-reducing taxa in the Alaska sites.

ContributorsPenton, Christopher (Author) / Yang, Caiyun (Author) / Wu, Liyou (Author) / Wang, Qiong (Author) / Zhang, Jin (Author) / Liu, Feifei (Author) / Qin, Yujia (Author) / Deng, Ye (Author) / Hemme, Christopher L. (Author) / Zheng, Tianling (Author) / Schuur, Edward A. G. (Author) / Tiedje, James (Author) / Zhou, Jizhong (Author) / College of Integrative Sciences and Arts (Contributor)
Created2016-11-24
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Description

Insulin-like growth factor 1 (IGF1) is an important biomarker for the management of growth hormone disorders. Recently there has been rising interest in deploying mass spectrometric (MS) methods of detection for measuring IGF1. However, widespread clinical adoption of any MS-based IGF1 assay will require increased throughput and speed to justify

Insulin-like growth factor 1 (IGF1) is an important biomarker for the management of growth hormone disorders. Recently there has been rising interest in deploying mass spectrometric (MS) methods of detection for measuring IGF1. However, widespread clinical adoption of any MS-based IGF1 assay will require increased throughput and speed to justify the costs of analyses, and robust industrial platforms that are reproducible across laboratories. Presented here is an MS-based quantitative IGF1 assay with performance rating of >1,000 samples/day, and a capability of quantifying IGF1 point mutations and posttranslational modifications. The throughput of the IGF1 mass spectrometric immunoassay (MSIA) benefited from a simplified sample preparation step, IGF1 immunocapture in a tip format, and high-throughput MALDI-TOF MS analysis. The Limit of Detection and Limit of Quantification of the resulting assay were 1.5 μg/L and 5 μg/L, respectively, with intra- and inter-assay precision CVs of less than 10%, and good linearity and recovery characteristics. The IGF1 MSIA was benchmarked against commercially available IGF1 ELISA via Bland-Altman method comparison test, resulting in a slight positive bias of 16%. The IGF1 MSIA was employed in an optimized parallel workflow utilizing two pipetting robots and MALDI-TOF-MS instruments synced into one-hour phases of sample preparation, extraction and MSIA pipette tip elution, MS data collection, and data processing. Using this workflow, high-throughput IGF1 quantification of 1,054 human samples was achieved in approximately 9 hours. This rate of assaying is a significant improvement over existing MS-based IGF1 assays, and is on par with that of the enzyme-based immunoassays. Furthermore, a mutation was detected in ∼1% of the samples (SNP: rs17884626, creating an A→T substitution at position 67 of the IGF1), demonstrating the capability of IGF1 MSIA to detect point mutations and posttranslational modifications.

ContributorsOran, Paul (Author) / Trenchevska, Olgica (Author) / Nedelkov, Dobrin (Author) / Borges, Chad (Author) / Schaab, Matthew (Author) / Rehder, Douglas (Author) / Jarvis, Jason (Author) / Sherma, Nisha (Author) / Shen, Luhui (Author) / Krastins, Bryan (Author) / Lopez, Mary F. (Author) / Schwenke, Dawn (Author) / Reaven, Peter D. (Author) / Nelson, Randall (Author) / Biodesign Institute (Contributor)
Created2014-03-24
Description
The Tale of the Tigers is a children’s picture book in which a tiger named Guava is transported from his world of Serenia to our world. In an attempt to find someone to help him with this situation, Guava meets another tiger named Papaya. After having his prey scared away

The Tale of the Tigers is a children’s picture book in which a tiger named Guava is transported from his world of Serenia to our world. In an attempt to find someone to help him with this situation, Guava meets another tiger named Papaya. After having his prey scared away by Guava, Papaya begins to explain the different hardships and dangers that tigers face in their natural habitat. Papaya also teaches Guava about the different programs and activities that humans have been doing to help increase and restore tiger populations. At the end of the story, Guava returns to his world and spreads awareness to those that live in Serenia about how tigers are threatened in other places and what’s being done to help them. Papaya uses basic ecological concepts to explain the importance of tigers in their ecosystem. These concepts include habitat loss, trophic levels, landscape fragmentation, and poaching. The story also incorporates different conservation methods, including captive breeding and the use of camera traps.
ContributorsMooney, Lena (Author) / Jesse, Lewis (Thesis director) / Meloy, Elizabeth (Committee member) / College of Integrative Sciences and Arts (Contributor, Contributor) / Barrett, The Honors College (Contributor)
Created2020-05
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Description
Food provides nutrients and sustenance that are essential to life. Humans rely on food to fuel our thoughts and actions. However, food isn’t just a source of energy; it’s a fundamental part of culture and connection. Simply sharing a meal with someone can build teamwork and create

Food provides nutrients and sustenance that are essential to life. Humans rely on food to fuel our thoughts and actions. However, food isn’t just a source of energy; it’s a fundamental part of culture and connection. Simply sharing a meal with someone can build teamwork and create a bond. Throughout this short memoir, I explored the ways in which food creates a connection across language and cultural barriers through reflection on specific experiences that I had in India, Uganda, and South Africa. While my experiences in each of these three countries were vastly different, there was one defining theme that brought them together: food. This memoir uses mixed media (personal reflection, research, recipes, and photos) to connect the three different international experiences. Reflection on my own family traditions and history bridges the gap between my upbringing and my interactions with people while spending time abroad. Popular recipes from each of the three countries are mixed into the personal reflection, showing how preparing food in a different geographic location can change the experience of preparation and eating. In addition to personal experience, included is a synthesis of research done on the effects of sharing a plate or a meal on negotiations tactics, how eating the same food increases trust, the ways in which food sharing is an act of social intimacy, and how it can build community. Food is an important part of family connection, a tool in many rituals such as Sunday dinners or breaking bread, a critical aspect of many religions, and is tied to the celebration of both birth and death in cultures around the globe. We all need to eat; food is the great commonality among people.
ContributorsRivard-Lentz, Haley Marie Anne (Co-author) / Rivard-Lentz, Haley (Co-author) / Fette, Donald (Thesis director) / Jacobs, Mark (Committee member) / School of Sustainability (Contributor) / School of Public Affairs (Contributor) / Watts College of Public Service & Community Solut (Contributor) / College of Integrative Sciences and Arts (Contributor) / Barrett, The Honors College (Contributor)
Created2020-05
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Description
Optical Communications are at a high point of interest by the space engineering community. After successful projects like the Lunar Laser Communications Demonstration (LLCD), NASA has become interested in augmenting their current Deep Space Network (DSN) with optical communication links. One such link is Deep Space Optical Communications (DSOC) which

Optical Communications are at a high point of interest by the space engineering community. After successful projects like the Lunar Laser Communications Demonstration (LLCD), NASA has become interested in augmenting their current Deep Space Network (DSN) with optical communication links. One such link is Deep Space Optical Communications (DSOC) which will be launching with the Psyche mission. To gain a full understanding of the advantages of this network, this thesis will go over the history and benefits of optical communications both on Earth and in space. This thesis will then go in depth on NASAs DSOC project through an algorithmic implementation of the communications channel.
ContributorsHorton, Paul Alexander (Author) / Mauskopf, Philip (Thesis director) / Sandy, Douglas (Committee member) / Martin, Thomas (Committee member) / Software Engineering (Contributor) / College of Integrative Sciences and Arts (Contributor) / Barrett, The Honors College (Contributor)
Created2018-05
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Description
Nonlinear responses in the dynamics of climate system could be triggered by small change of forcing. Interactions between different components of Earth’s climate system are believed to cause abrupt and catastrophic transitions, of which anthropogenic forcing is a major and the most irreversible driver. Meantime, in the face of global

Nonlinear responses in the dynamics of climate system could be triggered by small change of forcing. Interactions between different components of Earth’s climate system are believed to cause abrupt and catastrophic transitions, of which anthropogenic forcing is a major and the most irreversible driver. Meantime, in the face of global climate change, extreme climatic events, such as extreme precipitations, heatwaves, droughts, etc., are projected to be more frequent, more intense, and longer in duration. These nonlinear responses in climate dynamics from tipping points to extreme events pose serious threats to human society on a large scale. Understanding the physical mechanisms behind them has potential to reduce related risks through different ways. The overarching objective of this dissertation is to quantify complex interactions, detect tipping points, and explore propagations of extreme events in the hydroclimate system from a new structure-based perspective, by integrating climate dynamics, causal inference, network theory, spectral analysis, and machine learning. More specifically, a network-based framework is developed to find responses of hydroclimate system to potential critical transitions in climate. Results show that system-based early warning signals towards tipping points can be located successfully, demonstrated by enhanced connections in the network topology. To further evaluate the long-term nonlinear interactions among the U.S. climate regions, causality inference is introduced and directed complex networks are constructed from climatology records over one century. Causality networks reveal that the Ohio valley region acts as a regional gateway and mediator to the moisture transport and thermal transfer in the U.S. Furthermore, it is found that cross-regional causality variability manifests intrinsic frequency ranging from interannual to interdecadal scales, and those frequencies are associated with the physics of climate oscillations. Besides the long-term climatology, this dissertation also aims to explore extreme events from the system-dynamic perspective, especially the contributions of human-induced activities to propagation of extreme heatwaves in the U.S. cities. Results suggest that there are long-range teleconnections among the U.S. cities and supernodes in heatwave spreading. Findings also confirm that anthropogenic activities contribute to extreme heatwaves by the fact that causality during heatwaves is positively associated with population in megacities.
ContributorsYang, Xueli (Author) / Yang, Zhihua (Thesis advisor) / Lai, Ying-Cheng (Committee member) / Li, Qi (Committee member) / Xu, Tianfang (Committee member) / Zeng, Ruijie (Committee member) / Arizona State University (Publisher)
Created2023
Description
This project, Building the Backdrop, Expanding Perspectives on Sustainability, is a sculpture of a desert sunset that seeks to explore important sustainability issues and highlight the beauty in sustainable practices. Constructed for an honors thesis project at Arizona State University, the primary medium used was cardboard repurposed from package deliveries

This project, Building the Backdrop, Expanding Perspectives on Sustainability, is a sculpture of a desert sunset that seeks to explore important sustainability issues and highlight the beauty in sustainable practices. Constructed for an honors thesis project at Arizona State University, the primary medium used was cardboard repurposed from package deliveries to bring attention to modern overconsumption of packaging materials and showcase our ability to give new life to traditionally single use materials. I invite you to interact with the piece by sharing photos of yourself in front of it to help spread its message and exploring the resources shared along with the sculpture.
ContributorsSandoval, Nicole (Author) / Hines, Taylor (Thesis director) / Meissinger, Ellen (Committee member) / Barrett, The Honors College (Contributor) / Department of Supply Chain Management (Contributor) / Dean, W.P. Carey School of Business (Contributor) / College of Integrative Sciences and Arts (Contributor)
Created2024-05