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ContributorsLuca, Michael (Author) / Yan, Hao (Thesis director) / Stephanopoulos, Nicholas (Committee member) / Blattman, Joseph (Committee member) / Barrett, The Honors College (Contributor) / School of Life Sciences (Contributor) / School of International Letters and Cultures (Contributor) / School of Molecular Sciences (Contributor)
Created2024-05
Description
Cell immunotherapies have revolutionized clinical oncology. While CAR T cell therapy has been very effective in clinical studies, off-target immune toxicity limits eligible patients. Thus, NK cells have been approached with the same therapy design since NK cells have a more favorable safety profile. Therefore, the purpose of this research

Cell immunotherapies have revolutionized clinical oncology. While CAR T cell therapy has been very effective in clinical studies, off-target immune toxicity limits eligible patients. Thus, NK cells have been approached with the same therapy design since NK cells have a more favorable safety profile. Therefore, the purpose of this research project is to explore DNA nanotech-based NK cell engagers (NKCEs) that force an immunological synapse between the NK cell and the cancer cell, leading to cancer death. DNA tetrabody (TB) and DNA tetrahedron (TDN) are fabricated and armed with HER2 affibody for tight adhesion to HER2+ cancer cell lines like SKBR3. Overall, relationship between TB-NK treatment and cancer cell apoptosis is still unclear. TB-NK treatment induces an apoptotic profile similar to PMA/IO stimulation. Pilot cell assay needs to be replicated with additional controls and a shortened treatment window. For DNA TDN fabrication, HER2 affibody polishing with Ni-NTA affinity chromatography achieves high purity with 20% to 100% high-imidazole elution gradient. ssDNA-HER2 affibody conjugation is optimal when ssDNA is treated with 40-fold excess sulfo-SMCC for 4 hours. In conclusion, the manufacturing of DNA-based NKCEs is rapid and streamlined, which gives these NKCEs the potential to become a ready to use immunotherapy.
ContributorsLuca, Michael (Author) / Yan, Hao (Thesis director) / Stephanopoulos, Nicholas (Committee member) / Blattman, Joseph (Committee member) / Barrett, The Honors College (Contributor) / School of Life Sciences (Contributor) / School of International Letters and Cultures (Contributor) / School of Molecular Sciences (Contributor)
Created2024-05
Description
Alzheimer’s disease (AD) is projected to increase, and understanding risk and protective factors could help mitigate this increase. Deficits in Choline, a B-like vitamin, intake or issues with endogenous choline production can lead to an increased risk for AD development. To better understand the effects of endogenous choline through the

Alzheimer’s disease (AD) is projected to increase, and understanding risk and protective factors could help mitigate this increase. Deficits in Choline, a B-like vitamin, intake or issues with endogenous choline production can lead to an increased risk for AD development. To better understand the effects of endogenous choline through the lifespan in the context of Alzheimer pathology, Male and Female 3xTg-AD and NonTg mice, were aged to 16.81 ± 0.13 months. Body weight, food consumption data, and blood plasma samples were collected across the lifespan. A behavioral battery, that consisted of Rotarod, Elevated Plus Maze, and Intellicage, was performed to assess differences across a range of tasks. Hippocampal and cortical tissue were collected to assess pathology. Overall, 3xTg-AD mice had lower choline levels than NonTg at multiple timepoints and Males had higher choline than Females. Furthermore, 3xTg-AD Females had higher levels of both Aβ and Tau pathology than their Male counterparts. In the Intellicage, Females made fewer Percent of Correct Responses during Place Preference. Together these findings show that choline levels through the lifespan, impact the severity of pathology between Males and Female 3xTg-AD mice and behavioral differences between the 3xTg-AD and NonTg mouse models.
ContributorsMistry, Faizan (Author) / Velazquez, Ramon (Thesis director) / Judd, Jessica (Committee member) / Barrett, The Honors College (Contributor) / Department of Psychology (Contributor) / School of Life Sciences (Contributor)
Created2024-05
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ContributorsLuca, Michael (Author) / Yan, Hao (Thesis director) / Stephanopoulos, Nicholas (Committee member) / Blattman, Joseph (Committee member) / Barrett, The Honors College (Contributor) / School of Life Sciences (Contributor) / School of International Letters and Cultures (Contributor) / School of Molecular Sciences (Contributor)
Created2024-05
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Description

Natural antibacterial clays, when hydrated and applied topically, kill human pathogens including antibiotic resistant strains proliferating worldwide. Only certain clays are bactericidal; those containing soluble reduced metals and expandable clay minerals that absorb cations, providing a capacity for extended metal release and production of toxic hydroxyl radicals. Here we show

Natural antibacterial clays, when hydrated and applied topically, kill human pathogens including antibiotic resistant strains proliferating worldwide. Only certain clays are bactericidal; those containing soluble reduced metals and expandable clay minerals that absorb cations, providing a capacity for extended metal release and production of toxic hydroxyl radicals. Here we show the critical antibacterial components are soluble Fe2+ and Al3+ that synergistically attack multiple cellular systems in pathogens normally growth-limited by Fe supply. This geochemical process is more effective than metal solutions alone and provides an alternative antibacterial strategy to traditional antibiotics. Advanced bioimaging methods and genetic show that Al3+ misfolds cell membrane proteins, while Fe2+ evokes membrane oxidation and enters the cytoplasm inflicting hydroxyl radical attack on intracellular proteins and DNA. The lethal reaction precipitates Fe3+-oxides as biomolecular damage proceeds. Discovery of this bactericidal mechanism demonstrated by natural clays should guide designs of new mineral-based antibacterial agents.

ContributorsMorrison, Keith D. (Author) / Misra, Rajeev (Author) / Williams, Lynda (Author) / College of Liberal Arts and Sciences (Contributor)
Created2016-01-08
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Description

RseA sequesters RpoE (σE) to the inner membrane of Escherichia coli when envelope stress is low. Elevated envelope stress triggers RseA cleavage by the sequential action of two membrane proteases, DegS and RseP, releasing σE to activate an envelope stress reducing pathway. Revertants of a ΔdegP ΔbamB strain, which fails

RseA sequesters RpoE (σE) to the inner membrane of Escherichia coli when envelope stress is low. Elevated envelope stress triggers RseA cleavage by the sequential action of two membrane proteases, DegS and RseP, releasing σE to activate an envelope stress reducing pathway. Revertants of a ΔdegP ΔbamB strain, which fails to grow at 37°C due to high envelope stress, harbored mutations in the rseA and rpoE genes. Null and missense rseA mutations constitutively hyper-activated the σE regulon and significantly reduced the major outer membrane protein (OMP) levels. In contrast, a novel rpoE allele, rpoE3, resulting from the partial duplication of the rpoE gene, increased σE levels greater than that seen in the rseA mutant background but did not reduce OMP levels. A σE-dependent RybB::LacZ construct showed only a weak activation of the σE pathway by rpoE3. Despite this, rpoE3 fully reversed the growth and envelope vesiculation phenotypes of ΔdegP. Interestingly, rpoE3 also brought down the modestly activated Cpx envelope stress pathway in the ΔdegP strain to the wild type level, showing the complementary nature of the σE and Cpx pathways. Through employing a labile mutant periplasmic protein, AcrA[subscript L222Q], it was determined that the rpoE3 mutation overcomes the ΔdegP phenotypes, in part, by activating a σE-dependent proteolytic pathway. Our data suggest that a reduction in the OMP levels is not intrinsic to the σE-mediated mechanism of lowering envelope stress. They also suggest that under extreme envelope stress, a tight homeostasis loop between RseA and σE may partly be responsible for cell death, and this loop can be broken by mutations that either lower RseA activity or increase σE levels.

ContributorsLeiser, Owen P. (Author) / Charleston, Emily S. (Author) / Gerken, Henri (Author) / Misra, Rajeev (Author) / College of Liberal Arts and Sciences (Contributor)
Created2012-03-16
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Description

Panpsychism is the view that consciousness is an intrinsic state of the world. While early forms were advanced by Spinoza and Russell, only recently has panpsychism gained widespread academic consideration. In this paper, I will argue for panpsychism, based on a similarity of the nature of our consciousness with the

Panpsychism is the view that consciousness is an intrinsic state of the world. While early forms were advanced by Spinoza and Russell, only recently has panpsychism gained widespread academic consideration. In this paper, I will argue for panpsychism, based on a similarity of the nature of our consciousness with the nature of the parts of our consciousness. This argument will be motivated by an anti-strong emergentist viewpoint, while allowing for complex consciousness to arise from a form of weak emergence between fundamental parts. Ultimately, this argument demonstrates that an identity theorist would collapse to panpsychism or strong emergentism, the former being preferred. From this, I argue that panpsychists can gain some intuitive benefits of dualism and materialism, without inheriting their issues. This positions the panpsychist well to respond to issues like Jackson’s (1982) Mary-argument. I will then discuss possible objections to panpsychism, focusing primarily on the combination problem. I conclude that the co-consciousness strategy is the optimal solution to this problem and can account for the inverse issue of the decombination problem that cosmopsychism faces. Overall, panpsychism’s explanatory power and compatibility with other disciplines makes it a favorable theory within the philosophy of mind.

ContributorsKing, Liam (Author) / Watson, Jeffrey (Thesis director) / Botham, Thad (Committee member) / Barrett, The Honors College (Contributor) / School of Molecular Sciences (Contributor) / Historical, Philosophical & Religious Studies, Sch (Contributor)
Created2024-05
Description
Background: Eosinophilic esophagitis (EoE) is an increasingly prevalent allergic disease characterized by eosinophilic inflammation and symptoms of esophageal dysfunction. Diagnosis and monitoring require repeated, invasive endoscopic esophageal biopsies to assess levels of eosinophilic inflammation. Recently, the minimally invasive esophageal string test (EST) has been used collect protein in mucosal secretions

Background: Eosinophilic esophagitis (EoE) is an increasingly prevalent allergic disease characterized by eosinophilic inflammation and symptoms of esophageal dysfunction. Diagnosis and monitoring require repeated, invasive endoscopic esophageal biopsies to assess levels of eosinophilic inflammation. Recently, the minimally invasive esophageal string test (EST) has been used collect protein in mucosal secretions as a surrogate for tissue biopsies in monitoring disease activity. From the string, assessment of the eosinophil-associated proteins major basic protein-1 (MBP-1) and eotaxin-3 (Eot3) is used to assess disease activity; however, this requires measurement in a reference laboratory, for which the turnaround time for results exceeds the time required for histopathologic assessment of endoscopic biopsies. In addition, MBP-1 and Eot3 are not markers unique to eosinophils. These obstacles can be overcome by targeting eosinophil peroxidase (EPX), an eosinophil-specific protein, using a rapid point-of-care test. Currently, EPX is measured by a labor-intensive enzyme-linked immunosorbent assay (ELISA), but we sought to optimize a rapid point-of-care test to measure EPX in EST segments. Methods: We extracted protein from residual EST segments and measured EPX levels by ELISA and a lateral flow assay (LFA). Results: EPX levels measured by LFA strongly correlated with those quantified by ELISA (rs = 0.90 {95% CI: 0.8283, 0.9466}). The EPX LFA is comparable to ELISA for measuring EPX levels in ESTs. Conclusions: The EPX LFA can provide a way to rapidly test EPX levels in ESTs in clinical settings and may serve as a valuable tool to facilitate diagnosis and monitoring of EoE.
ContributorsDao, Adelyn (Author) / Lake, Douglas (Thesis director) / Borges, Chad (Committee member) / Wright, Benjamin (Committee member) / Barrett, The Honors College (Contributor) / School of Molecular Sciences (Contributor) / School of Life Sciences (Contributor)
Created2024-05
Description
This project challenges the prevailing weight-centric paradigm of present-day medicine which focuses on weight as a primary indicator of health. This study aimed to understand the impact of a brief pragmatic intervention to facilitate shifting healthcare providers' clinical conceptualization, attitudes, and practices from weight-centric to weight-inclusive care. A one-hour pragmatic

This project challenges the prevailing weight-centric paradigm of present-day medicine which focuses on weight as a primary indicator of health. This study aimed to understand the impact of a brief pragmatic intervention to facilitate shifting healthcare providers' clinical conceptualization, attitudes, and practices from weight-centric to weight-inclusive care. A one-hour pragmatic training was composed and presented to providers at a community health clinic. The intervention highlighted the critical gap in our understanding of health and attempted to bring attention to the intricate web of factors that play into the complexity of weight. The education also provided specific tools that providers can put into practice to better cultivate weight-inclusive care. Mixed methods were used to evaluate the acceptability and efficacy of the intervention via changes in provider attitudes, treatment behaviors, and conceptualization of patient issues. Findings reveal modest differences from pre- to post-intervention as well as a notable disconnect among providers’ understanding and application of concepts. Participants expressed significant interest in the training and weight-inclusive care.
ContributorsZach, Rose (Author) / McEntee, Mindy (Thesis director) / May, Michelle (Committee member) / Barrett, The Honors College (Contributor) / School of Life Sciences (Contributor)
Created2024-05
ContributorsZach, Rose (Author) / McEntee, Mindy (Thesis director) / May, Michelle (Committee member) / Barrett, The Honors College (Contributor) / School of Life Sciences (Contributor)
Created2024-05