Rhesus macaques (Macaca mulatta) are the most widely used nonhuman primate in biomedical research, have the largest natural geographic distribution of any nonhuman primate, and have been the focus of much evolutionary and behavioral investigation. Consequently, rhesus macaques are one of the most thoroughly studied nonhuman primate species. However, little is known about genome-wide genetic variation in this species. A detailed understanding of extant genomic variation among rhesus macaques has implications for the use of this species as a model for studies of human health and disease, as well as for evolutionary population genomics. Whole genome sequencing analysis of 133 rhesus macaques revealed >43.7 million single nucleotide variants, including thousands predicted to alter protein sequences, transcript splicing and transcription factor binding sites. Rhesus macaques exhibit 2.5-fold higher overall nucleotide diversity and slightly elevated putative functional variation compared with humans. This functional variation in macaques provides opportunities for analyses of coding and non-coding variation, and its cellular consequences. Despite modestly higher levels of non-synonymous variation in the macaques, the estimated distribution of fitness effects and the ratio of non-synonymous to synonymous variants suggest that purifying selection has had stronger effects in rhesus macaques than in humans. Demographic reconstructions indicate this species has experienced a consistently large but fluctuating population size. Overall, the results presented here provide new insights into the population genomics of nonhuman primates and expand genomic information directly relevant to primate models of human disease.

Arctic cyclone activity has a significant association with Arctic warming and Arctic ice decline. Cyclones in the North Pole are more complex and less developed than those in tropical regions. Identifying polar cyclones proves to be a task of greater complexity. To tackle this challenge, a new method which utilizes pressure level data and velocity field is proposed to improve the identification accuracy. In addition, the dynamic, simulative cyclone visualized with a 4D (four-dimensional) wind field further validated the identification result. A knowledge-driven system is eventually constructed for visualizing and analyzing an atmospheric phenomenon (cyclone) in the North Pole. The cyclone is simulated with WebGL on in a web environment using particle tracing. To achieve interactive frame rates, the graphics processing unit (GPU) is used to accelerate the process of particle advection. It is concluded with the experimental results that: (1) the cyclone identification accuracy of the proposed method is 95.6% when compared with the NCEP/NCAR (National Centers for Environmental Prediction/National Center for Atmospheric Research) reanalysis data; (2) the integrated knowledge-driven visualization system allows for streaming and rendering of millions of particles with an interactive frame rate to support knowledge discovery in the complex climate system of the Arctic region.

With over 16 million tweets per hour, 600 new blog posts per minute, and 400 million active users on Facebook, businesses have begun searching for ways to turn real-time consumer-based posts into actionable intelligence. The goal is to extract information from this noisy, unstructured data and use it for trend analysis and prediction. Current practices support the idea that visual analytics (VA) can help enable the effective analysis of such data. However, empirical evidence demonstrating the effectiveness of a VA solution is still lacking. A proposed VA toolkit extracts data from Bitly and Twitter to predict movie revenue and ratings. Results from the 2013 VAST Box Office Challenge demonstrate the benefit of an interactive environment for predictive analysis, compared to a purely statistical modeling approach. The VA approach used by the toolkit is generalizable to other domains involving social media data, such as sales forecasting and advertisement analysis.

The world is undergoing rapid changes in its climate, environment, and ecosystems due to increasing population growth, urbanization, and industrialization. Numerical simulation is becoming an important vehicle to enhance the understanding of these changes and their impacts, with regional and global simulation models producing vast amounts of data. Comprehending these multidimensional data and fostering collaborative scientific discovery requires the development of new visualization techniques. In this paper, we present a cyberinfrastructure solution - PolarGlobe - that enables comprehensive analysis and collaboration. PolarGlobe is implemented upon an emerging web graphics library, WebGL, and an open source virtual globe system Cesium, which has the ability to map spatial data onto a virtual Earth. We have also integrated volume rendering techniques, value and spatial filters, and vertical profile visualization to improve rendered images and support a comprehensive exploration of multi-dimensional spatial data. In this study, the climate simulation dataset produced by the extended polar version of the well-known Weather Research and Forecasting Model (WRF) is used to test the proposed techniques. PolarGlobe is also easily extendable to enable data visualization for other Earth Science domains, such as oceanography, weather, or geology.

The valley degree of freedom in two-dimensional (2D) crystals recently emerged as a novel information carrier in addition to spin and charge. The intrinsic valley lifetime in 2D transition metal dichalcogenides (TMD) is expected to be markedly long due to the unique spin-valley locking behavior, where the intervalley scattering of the electron simultaneously requires a large momentum transfer to the opposite valley and a flip of the electron spin. However, the experimentally observed valley lifetime in 2D TMDs has been limited to tens of nanoseconds thus far. We report efficient generation of microsecond-long-lived valley polarization in WSe₂/MoS₂ heterostructures by exploiting the ultrafast charge transfer processes in the heterostructure that efficiently creates resident holes in the WSe₂ layer. These valley-polarized holes exhibit near-unity valley polarization and ultralong valley lifetime: We observe a valley-polarized hole population lifetime of more than 1 μs and a valley depolarization lifetime (that is, intervalley scattering lifetime) of more than 40 μs at 10 K. The near-perfect generation of valley-polarized holes in TMD heterostructures, combined with ultralong valley lifetime, which is orders of magnitude longer than previous results, opens up new opportunities for novel valleytronics and spintronics applications.