Matching Items (4)
Description
Multidimensional data have various representations. Thanks to their simplicity in modeling multidimensional data and the availability of various mathematical tools (such as tensor decompositions) that support multi-aspect analysis of such data, tensors are increasingly being used in many application domains including scientific data management, sensor data management, and social network data analysis. Relational model, on the other hand, enables semantic manipulation of data using relational operators, such as projection, selection, Cartesian-product, and set operators. For many multidimensional data applications, tensor operations as well as relational operations need to be supported throughout the data life cycle. In this thesis, we introduce a tensor-based relational data model (TRM), which enables both tensor- based data analysis and relational manipulations of multidimensional data, and define tensor-relational operations on this model. Then we introduce a tensor-relational data management system, so called, TensorDB. TensorDB is based on TRM, which brings together relational algebraic operations (for data manipulation and integration) and tensor algebraic operations (for data analysis). We develop optimization strategies for tensor-relational operations in both in-memory and in-database TensorDB. The goal of the TRM and TensorDB is to serve as a single environment that supports the entire life cycle of data; that is, data can be manipulated, integrated, processed, and analyzed.
ContributorsKim, Mijung (Author) / Candan, K. Selcuk (Thesis advisor) / Davulcu, Hasan (Committee member) / Sundaram, Hari (Committee member) / Ye, Jieping (Committee member) / Arizona State University (Publisher)
Created2014
Description
It is increasingly common to see machine learning techniques applied in conjunction with computational modeling for data-driven research in neuroscience. Such applications include using machine learning for model development, particularly for optimization of parameters based on electrophysiological constraints. Alternatively, machine learning can be used to validate and enhance techniques for experimental data analysis or to analyze model simulation data in large-scale modeling studies, which is the approach I apply here. I use simulations of biophysically-realistic cortical neuron models to supplement a common feature-based technique for analysis of electrophysiological signals. I leverage these simulated electrophysiological signals to perform feature selection that provides an improved method for neuron-type classification. Additionally, I validate an unsupervised approach that extends this improved feature selection to discover signatures associated with neuron morphologies - performing in vivo histology in effect. The result is a simulation-based discovery of the underlying synaptic conditions responsible for patterns of extracellular signatures that can be applied to understand both simulation and experimental data. I also use unsupervised learning techniques to identify common channel mechanisms underlying electrophysiological behaviors of cortical neuron models. This work relies on an open-source database containing a large number of computational models for cortical neurons. I perform a quantitative data-driven analysis of these previously published ion channel and neuron models that uses information shared across models as opposed to information limited to individual models. The result is simulation-based discovery of model sub-types at two spatial scales which map functional relationships between activation/inactivation properties of channel family model sub-types to electrophysiological properties of cortical neuron model sub-types. Further, the combination of unsupervised learning techniques and parameter visualizations serve to integrate characterizations of model electrophysiological behavior across scales.
ContributorsHaynes, Reuben (Author) / Crook, Sharon M (Thesis advisor) / Gerkin, Richard C (Committee member) / Zhou, Yi (Committee member) / Baer, Steven (Committee member) / Armbruster, Hans D (Committee member) / Arizona State University (Publisher)
Created2020
Description
Tensors are commonly used for representing multi-dimensional data, such as Web graphs, sensor streams, and social networks. As a consequence of the increase in the use of tensors, tensor decomposition operations began to form the basis for many data analysis and knowledge discovery tasks, from clustering, trend detection, anomaly detection to correlationanalysis [31, 38]. It is well known that Singular Value matrix Decomposition (SVD) [9] is used to extract latent semantics for matrix data. When apply SVD to tensors, which have more than two modes, it is tensor decomposition. The two most popular tensor decomposition algorithms are the Tucker [54] and the CP [19] decompositions. Intuitively, they both generalize SVD to tensors. However, one key problem with tensor decomposition is its computational complexity which may cause system bottleneck. Therefore, two phase block-centric CP tensor decomposition (2PCP) was proposed to partition the tensor into small sub-tensors, execute sub-tensor decomposition in parallel and combine the factors from each sub-tensor into final decomposition factors through iterative rerefinement process. Consequently, I proposed Sub-tensor Impact Graph (SIG) to account for inaccuracy propagation among sub-tensors and measure the impact of decomposition of sub-tensors on the other's decomposition, Based on SIG, I proposed several optimization strategies to optimize 2PCP's phase-2 refinement process. Furthermore, I applied SIG and optimization strategies for data focus, data evolution, and focus shifting in tensor analysis. Personalized Tensor Decomposition (PTD) is proposed to account for the users focus given the observations that in many applications, the user may have a focus of interest i.e., part of the data for which the user needs high accuracy and beyond this area focus, accuracy may not be as critical. PTD takes as input one or more areas of focus and performs the decomposition in such a way that, when reconstructed, the accuracy of the tensor is boosted for these areas of focus. A related challenge of data evolution in tensor analytics is incremental tensor decomposition since re-computation of the whole tensor decomposition with each update will cause high computational costs and incur large memory overheads. Especially for applications where data evolves over time and the tensor-based analysis results need to be continuouslymaintained. To avoid re-decomposition, I propose a two-phase block-incremental CP-based tensor decomposition technique, BICP, that efficiently and effectively maintains tensor decomposition results in the presence of dynamically evolving tensor data. I further extend the research focus on user focus shift. User focus may change over time as data is evolving along the time. Although PTD is efficient, re-computation for each user preference update can be the bottleneck for the system. Therefore I propose dynamic evolving user focus tensor decomposition which can smartly reuse the existing decomposition result to improve the efficiency of evolving user focus block decomposition.
ContributorsHuang, shengyu (Author) / Candan, K. Selcuk (Thesis advisor) / Davulcu, Hasan (Committee member) / Sapino, Maria Luisa (Committee member) / Tong, Hanghang (Committee member) / Zou, Jia (Committee member) / Arizona State University (Publisher)
Created2021
Description
Many real-world problems, such as model- and data-driven computer simulation analysis, social and collaborative network analysis, brain data analysis, and so on, benefit from jointly modeling and analyzing the underlying patterns associated with complex, multi-relational data. Tensor decomposition is an ideal mathematical tool for this joint modeling, due to its simultaneous analysis of such multi-relational data, which is made possible by the data's multidimensional, array-based nature. A major challenge in tensor decomposition lies with its computational and space complexity, especially for dense datasets. While the process is comparatively faster for sparse tensors, decomposition is still a major bottleneck for many applications. The tensor decomposition process results in dense (hence, large) intermediate results, even when the input tensor is sparse (or small). Noise is another challenge for most data mining techniques, and many tensor decomposition schemes are sensitive to noisy datasets; this is an inevitable problem for real-world data, which can lead to false conclusions. In this dissertation, I develop innovative tensor decomposition algorithms for mining both sparse and dense multi-relational data in a noise-resistant way. I present novel, scalable, parallelizable tensor decomposition algorithms, specifically tuned to be effective for dense, noisy tensors, and which maintain the quality of the resulting analysis. Furthermore, I present results on multi-relational data applications focusing on model- and data-driven computer simulation analysis, as well as social network and web mining, which demonstrate the effectiveness of these tensor decompositions.
ContributorsLi, Xinsheng (Author) / Candan, Kasim S (Thesis advisor) / Davulcu, Hasan (Committee member) / Sapino, Maria L (Committee member) / Tong, Hanghang (Committee member) / Arizona State University (Publisher)
Created2019