Aristotle studied developing organisms, among other things, in ancient Greece, and his writings shaped Western philosophy and natural science for greater than two thousand years. He spent much of his life in Greece and studied with Plato at Plato's Academy in Athens, where he later established his own school called the Lyceum. Aristotle wrote greater than 150 treatises on subjects ranging from aesthetics, politics, ethics, and natural philosophy, which include physics and biology. Less than fifty of Aristotle's treatises persisted into the twenty-first century. In natural philosophy, later called natural science, Aristotle established methods for investigation and reasoning and provided a theory on how embryos generate and develop. He originated the theory that an organism develops gradually from undifferentiated material, later called epigenesis.

Friedrich Tiedemann studied the anatomy of humans and animals in the nineteenth century in Germany. He published on zoological subjects, on the heart of fish, the anatomy of amphibians and echinoderms, and the lymphatic and respiratory system in birds. In addition to his zoological anatomy, Tiedemann, working with the chemist Leopold Gmelin, published about how the digestive system functioned. Towards the end of his career Tiedemann published a comparative anatomy of the brains of white Europeans, black Africans, and Orangutans, in which he argued that there were no appreciable differences between the structure of the brains of blacks, women, and white European men that would suggest they were intellectually different. Tiedemann also researched the embryonic development of the brain and circulatory systems of human fetuses.

In 2008 researchers Daniel Warner and Richard Shine tested the Charnov-Bull model by conducting experiments on the Jacky dragon (Amphibolurus muricatus), in Australia. Their results showed that temperature-dependent sex determination(TSD) evolved in this species as an adaptation to fluctuating environmental temperatures. The Charnov-Bull model, proposed by Eric Charnov and James Bull in 1977, described the evolution of TSD, although the model was, for many years, untested. Many reptiles and some fish exhibit non-genetic sex determination, in which an embryos' environment can influence the sex of the adult organism. Environmental conditions such as humidity or population density can alter sex in some organisms, and a widespread form of non-genetic sex determination is temperature-dependent sex determination. TSD reveals how embryonic development can contribute to the evolution of physiological processes. Researchers have documented TSD in a wide range of species, and they continue to investigate how such a sex determining system has evolved.

Stephen Jay Gould studied snail fossils and worked at Harvard University in Cambridge, Massachusetts during the latter half of the twentieth century. He contributed to philosophical, historical, and scientific ideas in paleontology, evolutionary theory, and developmental biology. Gould, with Niles Eldredge, proposed the theory of punctuated equilibrium, a view of evolution by which species undergo long periods of stasis followed by rapid changes over relatively short periods instead of continually accumulating slow changes over millions of years. In his 1977 book, Ontogeny and Phylogeny, Gould reconstructed a history of developmental biology and stressed the importance of development to evolutionary biology. In a 1979 paper coauthored with Richard Lewontin, Gould and Lewonitn criticized many evolutionary bioligists for relying solely on adaptive evolution as an explanation for morphological change, and for failing to consider other explanations, such as developmental constraints.

David Starr Jordan studied fish and promoted eugenics in the US during the late nineteenth and early twentieth centuries. In his work, he embraced Charles Darwin s theory of evolution and described the importance of embryology in tracing phylogenic relationships. In 1891, he became the president of Stanford University in Stanford, California. Jordan condemned war and promoted conservationist causes for the California wilderness, and he advocated for the eugenic sterilization of thousands of Americans. Like many American eugenicists of the early twentieth century, Jordan combined ideas of Mendelian genetics and of Darwinian natural selection to form a basis for limiting or encouraging reproduction in certain individuals and groups based on their perceived hereditary fitness. Like other eugenicists, Jordan s attempt to control the reproductive fate of entire populations marked an episode in the history of reproduction and biology in which its concepts increasingly influenced the social and cultural contexts.

Dinosaur egg parataxonomy is a classification system that organizes dinosaur eggs by descriptive features such as shape, size, and shell thickness. Though egg parataxonomy originated in the nineteenth century, Zi-Kui Zhao from Beijing, China, developed a modern parataxonomic system in the late twentieth century. Zhao's system, published in 1975, enabled scientists to organize egg specimens according to observable features, and to communicate their findings. The eggshell protects the developing embryo, enables gas exchange between the embryo and the environment external to the egg, and the internal components of the egg provide nutrients for the embryo. Those external and internal features that support a developing embryo leave their mark on eggshells. Dinosaur egg parataxonomy classifies those characteristics and provides insight into dinosaur egg-laying behaviors, reproductive physiology, and embryonic development.

Neurocristopathies are a class of pathologies in vertebrates,
including humans, that result from abnormal expression, migration,
differentiation, or death of neural crest cells (NCCs) during embryonic development. NCCs are cells
derived from the embryonic cellular structure called the neural crest.
Abnormal NCCs can cause a neurocristopathy by chemically affecting the
development of the non-NCC tissues around them. They can also affect the
development of NCC tissues, causing defective migration or
proliferation of the NCCs. There are many neurocristopathies
that affect many different types of systems. Some neurocristopathies
result in albinism (piebaldism) and cleft palate in humans. Various
pigment, skin, thyroid, and hearing disorders, craniofacial and heart
abnormalities, malfunctions of the digestive tract, and tumors can be
classified as neurocristopathies. This classification ties a variety of
disorders to one embryonic origin.

In 1978, James Kitching discovered two dinosaur embryos in a road-cut talus at Roodraai (Red Bend) in Golden Gate Highlands National Park, South Africa. Kitching assigned the fossilized embryos to the species of long necked herbivores Massospondylus carinatus (longer vertebra) from the Early Jurassic period, between 200 and 183 million years ago. The embryos were partially visible but surrounded by eggshell and rock, called matrix. Kitching said that the eggs were too delicate to remove from the matrix without damage. Twenty-seven years later in 2005, Diane Scott, a member of a team led by Robert Reisz from the University of Toronto in Toronto, Canada, uncovered the two almost complete, well-articulated embryos. Scientists have inferred information from the embryos about Massospondylus dinosaurs' growth, development, and behaviors including parental care, gait, and locomotion.

Ilya Ilyich Mechnikov studied phagocytes, immune function, and starfish embryos in Europe during the late nineteenth and early twentieth centuries. Mechnikov adopted the French form of his name, Élie Metchnikoff, in the last twenty-five years of his life. In 1908, he won the Nobel Prize in Physiology or Medicine with Paul Ehrlich for their contributions to immunology. Mechnikov discovered phagocytes, immune cells that protect organisms by ingesting foreign particles or microorganisms, by conducting experiments on starfish larvae. He then developed a theory of the cellular process involving phagocytes, known as phagocytosis, to explain how inflammation is a part of the self defense system found in both vertebrates and invertebrates. His experimental work was part of the tradition of evolutionary embryology, which emerged in the decades following the publication of Charles Darwin's On the Origin of Species in 1859, and was influenced by Ernst Haeckel's concept of the biogenetic law.