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The advent of new high throughput technology allows for increasingly detailed characterization of the immune system in healthy, disease, and age states. The immune system is composed of two main branches: the innate and adaptive immune system, though the border between these two states is appearing less distinct. The adaptive

The advent of new high throughput technology allows for increasingly detailed characterization of the immune system in healthy, disease, and age states. The immune system is composed of two main branches: the innate and adaptive immune system, though the border between these two states is appearing less distinct. The adaptive immune system is further split into two main categories: humoral and cellular immunity. The humoral immune response produces antibodies against specific targets, and these antibodies can be used to learn about disease and normal states. In this document, I use antibodies to characterize the immune system in two ways: 1. I determine the Antibody Status (AbStat) from the data collected from applying sera to an array of non-natural sequence peptides, and demonstrate that this AbStat measure can distinguish between disease, normal, and aged samples as well as produce a single AbStat number for each sample; 2. I search for antigens for use in a cancer vaccine, and this search results in several candidates as well as a new hypothesis. Antibodies provide us with a powerful tool for characterizing the immune system, and this natural tool combined with emerging technologies allows us to learn more about healthy and disease states.
ContributorsWhittemore, Kurt (Author) / Sykes, Kathryn (Thesis advisor) / Johnston, Stephen A. (Committee member) / Jacobs, Bertram (Committee member) / Stafford, Phillip (Committee member) / Stout, Valerie (Committee member) / Arizona State University (Publisher)
Created2014
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This thesis examines the interpretations derived from the Kac Ring Model, and the adding of a modification to the original model via “kick backs,” which can be interpreted to represent time reversals in the individual Kac rings. The results of this modification are analyzed, and their implications explored. There are

This thesis examines the interpretations derived from the Kac Ring Model, and the adding of a modification to the original model via “kick backs,” which can be interpreted to represent time reversals in the individual Kac rings. The results of this modification are analyzed, and their implications explored. There are three main parts to this thesis. Part 1 is a literature review which explains the working principles of the original Kac ring and explores its numerous applications. Part 2 describes the software and the theoretical & computational methodology used to implement the model and gather data. Part 3 analyzes the data gathered and makes a conclusion about its implications. There is an appendix included which contains some figures from Part 3 in a larger size, as it wasn’t possible to make the figures bigger within the text due to formatting.

ContributorsGavrilov, Alexander (Author) / Sukharev, Maxim (Thesis director) / Chamberlin, Ralph (Committee member) / Peng, Xihong (Committee member) / Barrett, The Honors College (Contributor) / College of Integrative Sciences and Arts (Contributor) / Department of Information Systems (Contributor)
Created2022-05