Matching Items (3)
Filtering by

Clear all filters

134821-Thumbnail Image.png
Description
Mosquito population data is a valuable resource for researchers and public health officials working to limit the spread of deadly zoonotic viruses such as Zika Virus and West Nile Virus. Unfortunately, this data is currently difficult to obtain and aggregate across the United States. Obtaining historical data often requires filing

Mosquito population data is a valuable resource for researchers and public health officials working to limit the spread of deadly zoonotic viruses such as Zika Virus and West Nile Virus. Unfortunately, this data is currently difficult to obtain and aggregate across the United States. Obtaining historical data often requires filing requests to individual States or Counties and hoping for a response. Current online systems available for accessing aggregated data are lacking essential features, or limited in scope. In order to make mosquito population data more accessible for United States researchers, epidemiologists, and public health officials, the MosquitoDB system has been developed. MosquitoDB consists of a JavaScript Web Application, connected to a SQL database, that makes submitting and retrieving United States mosquito population data much simpler and straight forward than alternative systems. The MosquitoDB software project is open source and publically available on GitHub, allowing community scrutiny and contributions to add or improve necessary features. For this Creative Project, the core MosquitoDB system was designed and developed with 3 main features: 1) Web Interface for querying mosquito data. 2) Web Interface for submitting mosquito data. 3) Web Services for querying/retrieving and submitting mosquito data. The Web Interface is essential for common end users, such as researchers and public health officials, to access historical data or submit new data. The Web Services provide building blocks for Web Applications that other developers can use to incorporate data into new applications. The current MosquitoDB system is live at https://zodo.asu.edu/mosquito and the public code repository is available at https://github.com/developerDemetri/mosquitodb.
ContributorsJones-Shargani, Demetrius Paul (Author) / Scotch, Matthew (Thesis director) / Weissenbacher, Davy (Committee member) / Computer Science and Engineering Program (Contributor) / Barrett, The Honors College (Contributor)
Created2016-12
148351-Thumbnail Image.png
Description

Contraceptive methods are vital in maintaining women’s health and preventing unintended pregnancy. When a woman uses a method that reflects her personal preferences and lifestyle, the chances of low adoption and misuse decreases. The research aim of this project is to develop a web-based decision aid tailored to college women

Contraceptive methods are vital in maintaining women’s health and preventing unintended pregnancy. When a woman uses a method that reflects her personal preferences and lifestyle, the chances of low adoption and misuse decreases. The research aim of this project is to develop a web-based decision aid tailored to college women that assists in the selection of contraceptive methods. For this reason, My Contraceptive Choice (MCC) is built using the gaps identified in existing resources provided by Planned Parenthood and Bedsider, along with feedback from a university student focus group. The tool is a short quiz that is followed by two pages of information and resources for a variety of different contraceptive methods commonly used by college women. The evaluation phase of this project includes simulated test cases, a Google Forms survey, and a second focus group to assess the tool for accuracy and usability. From the survey, 130 of the 150 (80.7%) responses believe that the recommendations provided can help them select a birth control method. Furthermore, 136 of the 150 (90.0%) responses believe that the layout of the tool made it easy to navigate. The second focus group feedback suggests that the MCC tool is perceived to be accurate, usable, and useful to the college population. Participants believe that the MCC tool performs better overall compared to the Planned Parenthood quiz in creating a customized recommendation and Bedsider in overall usability. The test cases reveal that there are further improvements that could be made to create a more accurate recommendation to the user. In conclusion, the new MCC tool accomplishes the aim of creating a beneficial resource to college women in assisting with the birth control selection process.

ContributorsRedman, Molly (Author) / Wang, Dongwen (Thesis director) / Brian, Jennifer (Committee member) / College of Health Solutions (Contributor) / Department of Information Systems (Contributor) / School of Mathematical and Statistical Sciences (Contributor) / Barrett, The Honors College (Contributor)
Created2021-05
132648-Thumbnail Image.png
Description
Background: Pulmonary embolism is a deadly condition that is often diagnosed using a technique known as computed tomography pulmonary angiography (CTPA). CTPA reports are free-text, narrative-style forms of documentation conferring radiologist findings—both primary (regarding pulmonary embolism) and incidental. This project seeks to combine simple natural language processing (NLP) techniques, such

Background: Pulmonary embolism is a deadly condition that is often diagnosed using a technique known as computed tomography pulmonary angiography (CTPA). CTPA reports are free-text, narrative-style forms of documentation conferring radiologist findings—both primary (regarding pulmonary embolism) and incidental. This project seeks to combine simple natural language processing (NLP) techniques, such as regular expressions and rules, to build upon and
further process output from a machine learning based named entity recognition (NER) tool for the purposes of (1) linking references to radiological images with the corresponding clinical findings and (2) extracting primary and incidental findings.

Methods: The project’s system utilized a regular expression to extract image references. All CTPA reports were first processed with NER software to obtain the text and spans of clinical findings. A heuristic was used to determine the appropriate clinical finding that should be linked with a particular image reference. Another regular expression was used to extract primary findings from NER output; the remaining findings were considered incidental. Performance was
assessed against a gold standard, which was based upon a manually annotated version of the CTPA reports used in this project.

Results: Extraction of image references achieved a 100% accuracy. Linkages between these references and exact gold standard spans of the clinical findings achieved a precision of 0.24, a recall of 0.22, and an F1 score of 0.23. Linkages with partial spans of clinical findings as determined by the gold standard achieved a precision of 0.71, a recall of 0.67, and an F1 score of 0.69. Primary and incidental finding extraction achieved a precision of 0.67, a recall of 0.80, and
an F1 score of 0.73.

Discussion: Various elements reduced system performance such as the difficulty of exactly matching the spans of clinical findings from NER output with those found in the gold standard. The heuristic linking clinical findings and image references was especially sensitive to NER false positives and false negatives due to its assumption that the appropriate clinical finding was that which was immediately prior to the image reference. Although the system did not perform as well as hoped, lessons were learned such as the need for clear research methodology and proper gold standard creation; without a proper gold standard, problem scope and system performance cannot be properly assessed. Improvements to the system include creating a more robust heuristic, sifting NER false positives, and training the NER tool used on a dataset of CTPA reports.
ContributorsBorlongan, Matthew Bilog (Author) / Devarakonda, Murthy (Thesis director) / Murcko, Anita (Committee member) / College of Health Solutions (Contributor, Contributor) / Barrett, The Honors College (Contributor)
Created2019-05