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Description
There has been important progress in understanding ecological dynamics through the development of the theory of ecological stoichiometry. This fast growing theory provides new constraints and mechanisms that can be formulated into mathematical models. Stoichiometric models incorporate the effects of both food quantity and food quality into a single framework

There has been important progress in understanding ecological dynamics through the development of the theory of ecological stoichiometry. This fast growing theory provides new constraints and mechanisms that can be formulated into mathematical models. Stoichiometric models incorporate the effects of both food quantity and food quality into a single framework that produce rich dynamics. While the effects of nutrient deficiency on consumer growth are well understood, recent discoveries in ecological stoichiometry suggest that consumer dynamics are not only affected by insufficient food nutrient content (low phosphorus (P): carbon (C) ratio) but also by excess food nutrient content (high P:C). This phenomenon, known as the stoichiometric knife edge, in which animal growth is reduced not only by food with low P content but also by food with high P content, needs to be incorporated into mathematical models. Here we present Lotka-Volterra type models to investigate the growth response of Daphnia to algae of varying P:C ratios. Using a nonsmooth system of two ordinary differential equations (ODEs), we formulate the first model to incorporate the phenomenon of the stoichiometric knife edge. We then extend this stoichiometric model by mechanistically deriving and tracking free P in the environment. This resulting full knife edge model is a nonsmooth system of three ODEs. Bifurcation analysis and numerical simulations of the full model, that explicitly tracks phosphorus, leads to quantitatively different predictions than previous models that neglect to track free nutrients. The full model shows that the grazer population is sensitive to excess nutrient concentrations as a dynamical free nutrient pool induces extreme grazer population density changes. These modeling efforts provide insight on the effects of excess nutrient content on grazer dynamics and deepen our understanding of the effects of stoichiometry on the mechanisms governing population dynamics and the interactions between trophic levels.
ContributorsPeace, Angela (Author) / Kuang, Yang (Thesis advisor) / Elser, James J (Committee member) / Baer, Steven (Committee member) / Tang, Wenbo (Committee member) / Kang, Yun (Committee member) / Arizona State University (Publisher)
Created2014
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Description
Modern measurement schemes for linear dynamical systems are typically designed so that different sensors can be scheduled to be used at each time step. To determine which sensors to use, various metrics have been suggested. One possible such metric is the observability of the system. Observability is a binary condition

Modern measurement schemes for linear dynamical systems are typically designed so that different sensors can be scheduled to be used at each time step. To determine which sensors to use, various metrics have been suggested. One possible such metric is the observability of the system. Observability is a binary condition determining whether a finite number of measurements suffice to recover the initial state. However to employ observability for sensor scheduling, the binary definition needs to be expanded so that one can measure how observable a system is with a particular measurement scheme, i.e. one needs a metric of observability. Most methods utilizing an observability metric are about sensor selection and not for sensor scheduling. In this dissertation we present a new approach to utilize the observability for sensor scheduling by employing the condition number of the observability matrix as the metric and using column subset selection to create an algorithm to choose which sensors to use at each time step. To this end we use a rank revealing QR factorization algorithm to select sensors. Several numerical experiments are used to demonstrate the performance of the proposed scheme.
ContributorsIlkturk, Utku (Author) / Gelb, Anne (Thesis advisor) / Platte, Rodrigo (Thesis advisor) / Cochran, Douglas (Committee member) / Renaut, Rosemary (Committee member) / Armbruster, Dieter (Committee member) / Arizona State University (Publisher)
Created2015
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Description
The Kuramoto model is an archetypal model for studying synchronization in groups

of nonidentical oscillators where oscillators are imbued with their own frequency and

coupled with other oscillators though a network of interactions. As the coupling

strength increases, there is a bifurcation to complete synchronization where all oscillators

move with the same frequency and

The Kuramoto model is an archetypal model for studying synchronization in groups

of nonidentical oscillators where oscillators are imbued with their own frequency and

coupled with other oscillators though a network of interactions. As the coupling

strength increases, there is a bifurcation to complete synchronization where all oscillators

move with the same frequency and show a collective rhythm. Kuramoto-like

dynamics are considered a relevant model for instabilities of the AC-power grid which

operates in synchrony under standard conditions but exhibits, in a state of failure,

segmentation of the grid into desynchronized clusters.

In this dissertation the minimum coupling strength required to ensure total frequency

synchronization in a Kuramoto system, called the critical coupling, is investigated.

For coupling strength below the critical coupling, clusters of oscillators form

where oscillators within a cluster are on average oscillating with the same long-term

frequency. A unified order parameter based approach is developed to create approximations

of the critical coupling. Some of the new approximations provide strict lower

bounds for the critical coupling. In addition, these approximations allow for predictions

of the partially synchronized clusters that emerge in the bifurcation from the

synchronized state.

Merging the order parameter approach with graph theoretical concepts leads to a

characterization of this bifurcation as a weighted graph partitioning problem on an

arbitrary networks which then leads to an optimization problem that can efficiently

estimate the partially synchronized clusters. Numerical experiments on random Kuramoto

systems show the high accuracy of these methods. An interpretation of the

methods in the context of power systems is provided.
ContributorsGilg, Brady (Author) / Armbruster, Dieter (Thesis advisor) / Mittelmann, Hans (Committee member) / Scaglione, Anna (Committee member) / Strogatz, Steven (Committee member) / Welfert, Bruno (Committee member) / Arizona State University (Publisher)
Created2018
Description
A continuously and stably stratified fluid contained in a square cavity subjected to harmonic body forcing is studied numerically by solving the Navier-Stokes equations under the Boussinesq approximation. Complex dynamics are observed near the onset of instability of the basic state, which is a flow configuration that is always an

A continuously and stably stratified fluid contained in a square cavity subjected to harmonic body forcing is studied numerically by solving the Navier-Stokes equations under the Boussinesq approximation. Complex dynamics are observed near the onset of instability of the basic state, which is a flow configuration that is always an exact analytical solution of the governing equations. The instability of the basic state to perturbations is first studied with linear stability analysis (Floquet analysis), revealing a multitude of intersecting synchronous and subharmonic resonance tongues in parameter space. A modal reduction method for determining the locus of basic state instability is also shown, greatly simplifying the computational overhead normally required by a Floquet study. Then, a study of the nonlinear governing equations determines the criticality of the basic state's instability, and ultimately characterizes the dynamics of the lowest order spatial mode by the three discovered codimension-two bifurcation points within the resonance tongue. The rich dynamics include a homoclinic doubling cascade that resembles the logistic map and a multitude of gluing bifurcations.

The numerical techniques and methodologies are first demonstrated on a homogeneous fluid contained within a three-dimensional lid-driven cavity. The edge state technique and linear stability analysis through Arnoldi iteration are used to resolve the complex dynamics of the canonical shear-driven benchmark problem. The techniques here lead to a dynamical description of an instability mechanism, and the work serves as a basis for the remainder of the dissertation.
ContributorsYalim, Jason (Author) / Welfert, Bruno D. (Thesis advisor) / Lopez, Juan M. (Thesis advisor) / Jones, Donald (Committee member) / Tang, Wenbo (Committee member) / Platte, Rodrigo (Committee member) / Arizona State University (Publisher)
Created2019
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Description
The three-dimensional flow contained in a rapidly rotating circular

split cylinder is studied numerically solving the Navier--Stokes

equations. The cylinder is completely filled with fluid

and is split at the midplane. Three different types of boundary

conditions were imposed, leading to a variety of instabilities and

complex flow dynamics.

The first configuration has a strong

The three-dimensional flow contained in a rapidly rotating circular

split cylinder is studied numerically solving the Navier--Stokes

equations. The cylinder is completely filled with fluid

and is split at the midplane. Three different types of boundary

conditions were imposed, leading to a variety of instabilities and

complex flow dynamics.

The first configuration has a strong background rotation and a small

differential rotation between the two halves. The axisymmetric flow

was first studied identifying boundary layer instabilities which

produce inertial waves under some conditions. Limit cycle states and

quasiperiodic states were found, including some period doubling

bifurcations. Then, a three-dimensional study was conducted

identifying low and high azimuthal wavenumber rotating waves due to

G’ortler and Tollmien–-Schlichting type instabilities. Over most of

the parameter space considered, quasiperiodic states were found where

both types of instabilities were present.

In the second configuration, both cylinder halves are in exact

counter-rotation, producing an O(2) symmetry in the system. The basic state flow dynamic

is dominated by the shear layer created

in the midplane. By changing the speed rotation and the aspect ratio

of the cylinder, the flow loses symmetries in a variety of ways

creating static waves, rotating waves, direction reversing waves and

slow-fast pulsing waves. The bifurcations, including infinite-period

bifurcations, were characterized and the flow dynamics was elucidated.

Additionally, preliminary experimental results for this case are

presented.

In the third set up, with oscillatory boundary conditions, inertial

wave beams were forced imposing a range of frequencies. These beams

emanate from the corner of the cylinder and from the split at the

midplane, leading to destructive/constructive interactions which

produce peaks in vorticity for some specific frequencies. These

frequencies are shown to be associated with the resonant Kelvin

modes. Furthermore, a study of the influence of imposing a phase

difference between the oscillations of the two halves of the cylinder

led to the interesting result that different Kelvin

modes can be excited depending on the phase difference.
ContributorsGutierrez Castillo, Paloma (Author) / Lopez, Juan M. (Thesis advisor) / Herrmann, Marcus (Committee member) / Platte, Rodrigo (Committee member) / Welfert, Bruno (Committee member) / Tang, Wenbo (Committee member) / Arizona State University (Publisher)
Created2017
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DescriptionUnderstanding the evolution of opinions is a delicate task as the dynamics of how one changes their opinion based on their interactions with others are unclear.
ContributorsWeber, Dylan (Author) / Motsch, Sebastien (Thesis advisor) / Lanchier, Nicolas (Committee member) / Platte, Rodrigo (Committee member) / Armbruster, Dieter (Committee member) / Fricks, John (Committee member) / Arizona State University (Publisher)
Created2021