Matching Items (4)
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- All Subjects: Membranes
- All Subjects: MOF
- Creators: Brown, Stephanie Ann
- Creators: Close, Emily Charlotte
- Creators: Dopilka, Andrew Michael
- Creators: Espinas, Jaye Frances Palma
- Member of: Barrett, The Honors College Thesis/Creative Project Collection
Description
Plasmodium falciparum and Plasmodium vivax are two of the main propagators of human malaria. Both species contain the protein, Apical Membrane Antigen 1 (AMA-1), which is involved in the process of host cell invasion. However, the high degree of polymorphisms and antigenic diversity in this protein has prevented consistent single-vaccine success. Furthermore, the three main domains within AMA-1 (Domains I, II, and III), possess variable polymorphic features and levels of diversity. Overcoming this issue may require an understanding of the type of selection acting on AMA-1 in P. falciparum and P. vivax. Therefore, this investigation aimed to determine the type of selection acting on the whole AMA-1 coding sequence and in each domain for P. falciparum and P. vivax. Population structure was investigated on a global scale and among individual countries. AMA-1 sequences were obtained from the National Center for Biotechnology. For P. falciparum, 649 complete and 382 partial sequences were obtained. For P. vivax, 395 sequences were obtained (370 partial). The AMA-1 gene in P. falciparum was found to possess high nonsynonymous polymorphisms and disproportionately low synonymous polymorphisms. Domain I was found to have the most diverse region with consistently high nonsynonymous substitutions across all countries. Large, positive, and significant Z-test scores indicated the presence of positive selection while FST and NST values showed low genetic differentiation across populations. Data trends for all analyses were relatively consistent for the global and country-based analyses. The only country to deviate was Venezuela, which was the only South American country analyzed. Network analyses did not show distinguishable groupings. For P. falciparum, it was concluded that positive diversifying selection was acting on the AMA-1 gene, particularly in Domain I. In AMA-1 of P. vivax, nonsynonymous and synonymous polymorphisms were relatively equal across all analyses. FST and NST values were high, indicating that countries were genetically distinct populations. Network analyses did not show distinguishable grouping; however, the data was limited to small sample sizes. From the data, it was concluded that AMA-1 in P. vivax was evolving neutrally, where selective pressures did not strongly encourage positive or purifying selection specifically. In addition, different AMA-1 P. vivax strains were genetically distinct and this genetic identity correlated with geographic region. Therefore, AMA-1 strains in P. falciparum and P. vivax not only evolve differently and undergo different form of selection, but they also require different vaccine development strategies. A combination of strain-specific vaccines along with preventative measures on an environmental level will likely be more effective than trying to achieve a single, comprehensive vaccine.
ContributorsEspinas, Jaye Frances Palma (Author) / Escalante, Ananias (Thesis director) / Taylor, Jay (Committee member) / Rosenberg, Michael (Committee member) / Barrett, The Honors College (Contributor) / School of Life Sciences (Contributor)
Created2015-05
Description
Acute Kidney Injury (AKI) may be detected through biomarkers in urine. This research is being done to develop a membrane for use in separating urine biomarkers to monitor their level. A hydrophobic membrane was treated to improve separation of the desired biomarker for colorimetric sensing. This method was tested with model solutions containing the biomarker. Future work will extend to testing with real urine.
ContributorsBrown, Stephanie Ann (Author) / Lind, Mary Laura (Thesis director) / Yin, Huidan (Committee member) / Materials Science and Engineering Program (Contributor) / Chemical Engineering Program (Contributor) / Barrett, The Honors College (Contributor)
Created2017-05
Description
Zeolite thin films and membranes are currently a promising technology for pervaporation, gas separation and water purification. The main drawback with these technologies is that the synthesis is not consistent leading to varied and unreproducible results. The Langmuir-Blodgett technique is a robust method for transferring monolayers of molecules or crystals to a solid substrate. By measuring the surface pressure and controlling the area, reliable results can be achieved by transferring monolayers to different solid substrates. It has been shown previously that various types of zeolites can be functionalized and dispersed on the top of water. This is done by using an alcohol to form a hydrophobic coating on the surface of zeolite. The Langmuir-Blodgett can be used to create thin, compact films of zeolites for synthesizing and growing zeolite films. For the first reported time, cubic LTA Zeolites monolayers have been assembled with the Langmuir-Blodgett technique with multiple solvents and different sizes of zeolites. These films were characterized with Scanning Electron Microscopy and Pressure-Area Isotherms generated from the Langmuir-Blodgett. It was found that linoleic acid is a required addition to the zeolite dispersions to protect the mechanical stability during agitation. Without this addition, the LTA zeolites are broken apart and lose their characteristic cubic structure. This effect is discussed and a theory is presented that the interparticle interactions of the long alkane chain of the linoleic acid help reduce the shear stress on the individual zeolite particles, thus preventing them from being broken. The effect of size of the zeolites on the monolayer formation was also discussed. There seemed to be little correlation between the monolayer quality and formation as size was changed. However, to optimize the process, different concentrations and target pressures are needed. Lastly, the effect of the solvent was explored and it was found that there is a different between monolayer formations for different solvents likely due to differing interparticle interactions. Overall, LTA zeolites were successfully fabricated and the important factors to consider are the zeolite size, the solvent, and the amount of surfactant stabilizer added.
ContributorsDopilka, Andrew Michael (Author) / Lind, Mary Laura (Thesis director) / Cay, Pinar (Committee member) / Materials Science and Engineering Program (Contributor) / Chemical Engineering Program (Contributor) / Barrett, The Honors College (Contributor)
Created2016-12
Description
Metal-organic frameworks (MOFs) are a new set of porous materials comprised of metals or metal clusters bonded together in a coordination system by organic linkers. They are becoming popular for gas separations due to their abilities to be tailored toward specific applications. Zirconium MOFs in particular are known for their high stability under standard temperature and pressure due to the strength of the Zirconium-Oxygen coordination bond. However, the acid modulator needed to ensure long range order of the product also prevents complete linker deprotonation. This leads to a powder product that cannot easily be incorporated into continuous MOF membranes. This study therefore implemented a new bi-phase synthesis technique with a deprotonating agent to achieve intergrowth in UiO-66 membranes. Crystal intergrowth will allow for effective gas separations and future permeation testing. During experimentation, successful intergrown UiO-66 membranes were synthesized and characterized. The degree of intergrowth and crystal orientations varied with changing deprotonating agent concentration, modulator concentration, and ligand:modulator ratios. Further studies will focus on achieving the same results on porous substrates.
ContributorsClose, Emily Charlotte (Author) / Mu, Bin (Thesis director) / Shan, Bohan (Committee member) / Chemical Engineering Program (Contributor) / Barrett, The Honors College (Contributor)
Created2016-12