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Recently, the use of zinc oxide (ZnO) nanowires as an interphase in composite materials has been demonstrated to increase the interfacial shear strength between carbon fiber and an epoxy matrix. In this research work, the strong adhesion between ZnO and carbon fiber is investigated to elucidate the interactions at the

Recently, the use of zinc oxide (ZnO) nanowires as an interphase in composite materials has been demonstrated to increase the interfacial shear strength between carbon fiber and an epoxy matrix. In this research work, the strong adhesion between ZnO and carbon fiber is investigated to elucidate the interactions at the interface that result in high interfacial strength. First, molecular dynamics (MD) simulations are performed to calculate the adhesive energy between bare carbon and ZnO. Since the carbon fiber surface has oxygen functional groups, these were modeled and MD simulations showed the preference of ketones to strongly interact with ZnO, however, this was not observed in the case of hydroxyls and carboxylic acid. It was also found that the ketone molecules ability to change orientation facilitated the interactions with the ZnO surface. Experimentally, the atomic force microscope (AFM) was used to measure the adhesive energy between ZnO and carbon through a liftoff test by employing highly oriented pyrolytic graphite (HOPG) substrate and a ZnO covered AFM tip. Oxygen functionalization of the HOPG surface shows the increase of adhesive energy. Additionally, the surface of ZnO was modified to hold a negative charge, which demonstrated an increase in the adhesive energy. This increase in adhesion resulted from increased induction forces given the relatively high polarizability of HOPG and the preservation of the charge on ZnO surface. It was found that the additional negative charge can be preserved on the ZnO surface because there is an energy barrier since carbon and ZnO form a Schottky contact. Other materials with the same ionic properties of ZnO but with higher polarizability also demonstrated good adhesion to carbon. This result substantiates that their induced interaction can be facilitated not only by the polarizability of carbon but by any of the materials at the interface. The versatility to modify the magnitude of the induced interaction between carbon and an ionic material provides a new route to create interfaces with controlled interfacial strength.
ContributorsGalan Vera, Magdian Ulises (Author) / Sodano, Henry A (Thesis advisor) / Jiang, Hanqing (Committee member) / Solanki, Kiran (Committee member) / Oswald, Jay (Committee member) / Speyer, Gil (Committee member) / Arizona State University (Publisher)
Created2013
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Description
Hydrogen embrittlement (HE) is a phenomenon that affects both the physical and chemical properties of several intrinsically ductile metals. Consequently, understanding the mechanisms behind HE has been of particular interest in both experimental and modeling research. Discrepancies between experimental observations and modeling results have led to various proposals for HE

Hydrogen embrittlement (HE) is a phenomenon that affects both the physical and chemical properties of several intrinsically ductile metals. Consequently, understanding the mechanisms behind HE has been of particular interest in both experimental and modeling research. Discrepancies between experimental observations and modeling results have led to various proposals for HE mechanisms. Therefore, to gain insights into HE mechanisms in iron, this dissertation aims to investigate several key issues involving HE such as: a) the incipient crack tip events; b) the cohesive strength of grain boundaries (GBs); c) the dislocation-GB interactions and d) the dislocation mobility.

The crack tip, which presents a preferential trap site for hydrogen segregation, was examined using atomistic methods and the continuum based Rice-Thompson criterion as sufficient concentration of hydrogen can alter the crack tip deformation mechanism. Results suggest that there is a plausible co-existence of the adsorption induced dislocation emission and hydrogen enhanced decohesion mechanisms. In the case of GB-hydrogen interaction, we observed that the segregation of hydrogen along the interface leads to a reduction in cohesive strength resulting in intergranular failure. A methodology was further developed to quantify the role of the GB structure on this behavior.

GBs play a fundamental role in determining the strengthening mechanisms acting as an impediment to the dislocation motion; however, the presence of an unsurmountable barrier for a dislocation can generate slip localization that could further lead to intergranular crack initiation. It was found that the presence of hydrogen increases the strain energy stored within the GB which could lead to a transition in failure mode. Finally, in the case of body centered cubic metals, understanding the complex screw dislocation motion is critical to the development of an accurate continuum description of the plastic behavior. Further, the presence of hydrogen has been shown to drastically alter the plastic deformation, but the precise role of hydrogen is still unclear. Thus, the role of hydrogen on the dislocation mobility was examined using density functional theory and atomistic simulations. Overall, this dissertation provides a novel atomic-scale understanding of the HE mechanism and development of multiscale tools for future endeavors.
ContributorsAdlakha, Ilaksh (Author) / Solanki, Kiran (Thesis advisor) / Mignolet, Marc (Committee member) / Chawla, Nikhilesh (Committee member) / Jiang, Hanqing (Committee member) / Liu, Yongming (Committee member) / Arizona State University (Publisher)
Created2015
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Description
Improved knowledge connecting the chemistry, structure, and properties of polymers is necessary to develop advanced materials in a materials-by-design approach. Molecular dynamics (MD) simulations can provide tremendous insight into how the fine details of chemistry, molecular architecture, and microstructure affect many physical properties; however, they face well-known restrictions in their

Improved knowledge connecting the chemistry, structure, and properties of polymers is necessary to develop advanced materials in a materials-by-design approach. Molecular dynamics (MD) simulations can provide tremendous insight into how the fine details of chemistry, molecular architecture, and microstructure affect many physical properties; however, they face well-known restrictions in their applicable temporal and spatial scales. These limitations have motivated the development of computationally-efficient, coarse-grained methods to investigate how microstructural details affect thermophysical properties. In this dissertation, I summarize my research work in structure-based coarse-graining methods to establish the link between molecular-scale structure and macroscopic properties of two different polymers. Systematically coarse-grained models were developed to study the viscoelastic stress response of polyurea, a copolymer that segregates into rigid and viscous phases, at time scales characteristic of blast and impact loading. With the application of appropriate scaling parameters, the coarse-grained models can predict viscoelastic properties with a speed up of 5-6 orders of magnitude relative to the atomistic MD models. Coarse-grained models of polyethylene were also created to investigate the thermomechanical material response under shock loading. As structure-based coarse-grained methods are generally not transferable to states different from which they were calibrated at, their applicability for modeling non-equilibrium processes such as shock and impact is highly limited. To address this problem, a new model is developed that incorporates many-body interactions and is calibrated across a range of different thermodynamic states using a least square minimization scheme. The new model is validated by comparing shock Hugoniot properties with atomistic and experimental data for polyethylene. Lastly, a high fidelity coarse-grained model of polyethylene was constructed that reproduces the joint-probability distributions of structural variables such as the distributions of bond lengths and bond angles between sequential coarse-grained sites along polymer chains. This new model accurately represents the structure of both the amorphous and crystal phases of polyethylene and enabling investigation of how polymer processing such as cold-drawing and bulk crystallization affect material structure at significantly larger time and length scales than traditional molecular simulations.
ContributorsAgrawal, Vipin (Author) / Oswald, Jay (Thesis advisor) / Peralta, Pedro (Committee member) / Chamberlin, Ralph (Committee member) / Solanki, Kiran (Committee member) / Jiao, Yang (Committee member) / Arizona State University (Publisher)
Created2016
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Description
In order to better understand the physical properties of polyethylene, an extremely common plastic used mostly in packaging, many scientists and engineers use olecular dynamics. To reduce the computational expense associated with traditional atomistic molecular dynamics, coarse-grained molecular dynamics is often used. Coarse-grained molecular dynamics groups multiple atoms into single

In order to better understand the physical properties of polyethylene, an extremely common plastic used mostly in packaging, many scientists and engineers use olecular dynamics. To reduce the computational expense associated with traditional atomistic molecular dynamics, coarse-grained molecular dynamics is often used. Coarse-grained molecular dynamics groups multiple atoms into single beads, reducing the number of degrees of freedom in a system and eliminating smaller atoms with faster kinematics. However, even coarse-grained methods have their limitations, one of which is timestep duration, which is limited by the maximum vibrational frequency in the coarse-grained system. To study this limitation, a coarse-grained model of polyethylene was created such that every C 2 H 4 unit was replaced with a bead. Coarse-grained potentials for bond-stretching, bond-bending, and non-bonded interaction were generated using the iterative Boltzmann inversion method, which matches coarse-grained distribution functions to atomistic distribution functions. After the creation of the model, the coarse-grained potentials were rescaled by a constant so that they were less stiff, decreasing the maximum vibrational frequency of the system. It is found that by diminishing the bond-stretching potential to 6.25% of its original value, the maximum stable timestep can be increased 85% over that of the unmodified potential functions. The results of this work suggest that it may be possible to simulate lengthy processes, such as the crystallization of polyethylene, in less time with adjusted coarse-grained potentials. Additionally, the large discrepancies in the speed of bond-stretching, bond-bending, and non- bonded interaction dynamics suggest that a multi-timestep method may be worth investigating in future work.
ContributorsWiles, Christian Scott (Author) / Oswald, Jay (Thesis director) / Dai, Lenore (Committee member) / Mechanical and Aerospace Engineering Program (Contributor) / Barrett, The Honors College (Contributor)
Created2015-12
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Description
In real world applications, materials undergo a simultaneous combination of tension, compression, and torsion as a result of high velocity impact. The split Hopkinson pressure bar (SHPB) is an effective tool for analyzing stress-strain response of materials at high strain rates but currently little can be done to produce a

In real world applications, materials undergo a simultaneous combination of tension, compression, and torsion as a result of high velocity impact. The split Hopkinson pressure bar (SHPB) is an effective tool for analyzing stress-strain response of materials at high strain rates but currently little can be done to produce a synchronized combination of these varying impacts. This research focuses on fabricating a flange which will be mounted on the incident bar of a SHPB and struck perpendicularly by a pneumatically driven striker thus allowing for torsion without interfering with the simultaneous compression or tension. Analytical calculations are done to determine size specifications of the flange to protect against yielding or failure. Based on these results and other design considerations, the flange and a complementary incident bar are created. Timing can then be established such that the waves impact the specimen at the same time causing simultaneous loading of a specimen. This thesis allows research at Arizona State University to individually incorporate all uniaxial deformation modes (tension, compression, and torsion) at high strain rates as well as combining either of the first two modes with torsion. Introduction of torsion will expand the testing capabilities of the SHPB at ASU and allow for more in depth analysis of the mechanical behavior of materials under impact loading. Combining torsion with tension or compression will promote analysis of a material's adherence to the Von Mises failure criterion. This greater understanding of material behavior can be implemented into models and simulations thereby improving the accuracy with which engineers can design new structures.
ContributorsVotroubek, Edward Daniel (Author) / Solanki, Kiran (Thesis director) / Oswald, Jay (Committee member) / Mechanical and Aerospace Engineering Program (Contributor) / Barrett, The Honors College (Contributor)
Created2016-05
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Description
Ionic liquids are salts with low melting temperatures that maintain their liquid form below 100 °C, or even at ambient temperature. Ionic liquids are conductive, electrochemically stable, non-volatile, and have a low vapor pressure, making them a class of excellent candidate materials for electrolytes in energy storage, electrodeposition, batteries,

Ionic liquids are salts with low melting temperatures that maintain their liquid form below 100 °C, or even at ambient temperature. Ionic liquids are conductive, electrochemically stable, non-volatile, and have a low vapor pressure, making them a class of excellent candidate materials for electrolytes in energy storage, electrodeposition, batteries, fuel cells, and supercapacitors. Due to their multiple advantages, the use of ionic liquids on Earth has been widely studied; however, further research must be done before their implementation in space. The extreme temperatures encountered during space travel and extra-terrestrial deployment have the potential to greatly affect the liquid electrolyte system. Examples of low temperature planetary bodies are the permanently shadowed sections of the moon or icy surfaces of Jupiter’s moons. Recent studies have explored the limits of glass transition temperatures for ionic liquid systems. The project is centered around the development of an ionic liquid system for a molecular electronic transducer seismometer that would be deployed on the low temperature system of Europa. For this project, molecular dynamics simulations used input intermolecular and intramolecular parameters that then simulated molecular interactions. Molecular dynamics simulations are based around the statistical mechanics of chemistry and help calculate equilibrium properties that are not easily calculated by hand. These simulations will give insight into what interactions are significant inside a ionic liquid solution. The simulations aim to create an understanding how ionic liquid electrolyte systems function at a molecular level. With this knowledge one can tune their system and its contents to adapt the systems properties to fit all environments the seismometers will experience.
ContributorsDavis, Vincent Champneys (Author) / Dai, Lenore (Thesis director) / Gliege, Marisa (Committee member) / Chemical Engineering Program (Contributor) / Barrett, The Honors College (Contributor)
Created2020-05
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Description
RNA granules are assemblies of RNA and proteins inside cells that serve multiple roles and functions. Some of the functions they serve in include a variety of organelles such as germ cell P granules, stress granules, and neuronal granules with diverse functions. Intrinsically disordered domains are abundant in the proteins

RNA granules are assemblies of RNA and proteins inside cells that serve multiple roles and functions. Some of the functions they serve in include a variety of organelles such as germ cell P granules, stress granules, and neuronal granules with diverse functions. Intrinsically disordered domains are abundant in the proteins responsible for RNA granules, and they have been attributed to the formation and degradation of RNA granules through a liquid-liquid phase separation (LLPS) process. LLPS is typically a reversible process where a homogenous fluid de- mixes into two distinct liquid phases. Here, 47 RNA granule proteins with such disordered regions have been surveyed. These proteins have been simulated using coarse-grained molecular simulations to determine size dependence on temperature change. Upper critical solution temperature (UCST) and lower critical solution temperature (LCST) are phase behaviors that can be calculated using the data gathered for scaling and phase behaviors of these proteins. We discovered that less charged amino acid contents are present in RNA granules in comparison to general disordered sequences. This is in line with the observation that charged amino acids are less preferred for the sequence to phase separate at physiological-relevant temperatures. More interestingly, there seems to be an even mix of sequences contributing to both UCST, LCST, and no phase behaviors and the average temperature dependent behaviors of all these proteins have a relatively weak temperature dependence within the temperature range 300 and 325K. The average suggest that these proteins might collectively contribute to RNA granules in a way that adapts to small temperature fluctuations.
ContributorsFrench, Nolan James (Author) / Zheng, Wenwei (Thesis director) / Garg, Vikas (Committee member) / College of Integrative Sciences and Arts (Contributor) / Department of Information Systems (Contributor) / Barrett, The Honors College (Contributor)
Created2020-05
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Description
In recent years, experimental and theoretical evidence has pointed to the existence of biologically active proteins that either include unstructured regions or are entirely unstructured. Referred to as intrinsically disordered proteins (IDPs), they are now known to be involved in diverse functions, much as any folded protein. Mutations

In recent years, experimental and theoretical evidence has pointed to the existence of biologically active proteins that either include unstructured regions or are entirely unstructured. Referred to as intrinsically disordered proteins (IDPs), they are now known to be involved in diverse functions, much as any folded protein. Mutations in IDPs have been implicated in multiple neurodegenerative diseases. Considering the disordered nature of IDPs, there are limited structure features that can be used to quantify the disordered state. One such pair of variables are the radius of gyration (Rg) and the corresponding Flory’s scaling exponent, both of which characterize the dimension and size of the protein. It is generally understood that the sequence of an IDP affects its Rg and scaling exponent. Properties such as amino acid hydrophobicity and charge can play important roles in determining the Rg of an IDP, much as they affect the structure of a folded protein. However, it is nontrivial to directly predict Rg and scaling exponent from an IDP sequence. In this thesis, a coarse-grained model is used to simulate the Rg and scaling exponents of 10,000 randomly generated sequences mimicking the amino acid propensities of a typical IDP sequence. Such a database is then fed into an artificial neural network model to directly predict the scaling exponent from the sequence. The framework has not only made accurate and precise predictions (<1% error) in comparing to the simulation-obtained scaling exponent, but also suggest important sequence descriptors for such prediction. In addition, through varying the number of sequences for training the model, we suggest a minimum dataset of 100 sequences might be sufficient to achieve a 5% error of prediction, shedding light upon possible predictive models with only experimental inputs.
ContributorsBrown, Matthew D (Author) / Zheng, Wenwei (Thesis director) / Huffman, Holly (Committee member) / College of Integrative Sciences and Arts (Contributor) / Barrett, The Honors College (Contributor)
Created2019-05
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Description
Titanium dioxide is an essential material under research for energy and environmental applications, chiefly through its photocatalytic properties. These properties allow it to be used for water-splitting, detoxification, and photovoltaics, in addition to its conventional uses in pigmentation and sunscreen. Titanium dioxide exists in several polymorphic structures, of

Titanium dioxide is an essential material under research for energy and environmental applications, chiefly through its photocatalytic properties. These properties allow it to be used for water-splitting, detoxification, and photovoltaics, in addition to its conventional uses in pigmentation and sunscreen. Titanium dioxide exists in several polymorphic structures, of which the most common are rutile and anatase. We focused on anatase for the purposes of this research, due to its promising results for hydrolysis.

Anatase exists often in its reduced form (TiO2-x), enabling it to perform redox reactions through the absorption and release of oxygen into/from the crystal lattice. These processes result in structural changes, induced by defects in the material, which can theoretically be observed using advanced characterization methods. In situ electron microscopy is one of such methods, and can provide a window into these structural changes. However, in order to interpret the structural evolution caused by defects in materials, it is often necessary and pertinent to use atomistic simulations to compare the experimental images with models.

In this thesis project, we modeled the defect structures in anatase, around oxygen vacancies and at surfaces, using molecular dynamics, benchmarked with density functional theory. Using a “reactive” forcefield designed for the simulation of interactions between anatase and water that can model and treat bonding through the use of bond orders, different vacancy structures were analyzed and simulated. To compare these theoretical, generated models with experimental data, the “multislice approach” to TEM image simulation was used. We investigated a series of different vacancy configurations and surfaces and generated fingerprints for comparison with TEM experiments. This comparison demonstrated a proof of concept for a technique suggesting the possibility for the identification of oxygen vacancy structures directly from TEM images. This research aims to improve our atomic-level understanding of oxide materials, by providing a methodology for the analysis of vacancy formation from very subtle phenomena in TEM images.
ContributorsShindel, Benjamin Noam (Author) / Crozier, Peter (Thesis director) / Anwar, Shahriar (Committee member) / Singh, Arunima (Committee member) / Materials Science and Engineering Program (Contributor) / Barrett, The Honors College (Contributor)
Created2019-05