Matching Items (20)
Filtering by
- All Subjects: Metabolic Engineering
- All Subjects: E. coli
- All Subjects: Electrospinning
- Creators: Chemical Engineering Program
Description
The increased shift towards environmentalism has brought notable attention to a universal excessive plastic consumption and subsequent plastic overload in landfills. Among these plastics, polyethylene terephthalate, more commonly known as PET, constitutes a large percentage of the waste that ends up in landfills. Material and chemical/thermal methods for recycling are both costly, and inefficient, which necessitates a more sustainable and cheaper alternative. The current study aims at fulfilling that role through genetic engineering of Bacillus subtilis with integration of genes from LCC, Ideonella sakaiensis, and Bacillus subtilis. The plasmid construction was done through restriction cloning. A recombinant plasmid for the expression of LCC was constructed, and transformed into Escherichia coli. Future experiments for this study should include redesigning of primers, with possible combination of signal peptides with genes during construct design, and more advanced assays for effective outcomes.
ContributorsKalscheur, Bethany Ann (Author) / Varman, Arul (Thesis director) / Andino, Jean (Committee member) / Chemical Engineering Program (Contributor) / Barrett, The Honors College (Contributor)
Created2021-05
Description
Depletion of fossil fuel resources has led to the investigation of alternate feedstocks for and methods of chemical synthesis, in particular the use of E. coli biocatalysts to produce fine commodity chemicals from renewable glucose sources. Production of phenol, 2-phenylethanol, and styrene was investigated, in particular the limitation in yield and accumulation that results from high product toxicity. This paper examines two methods of product toxicity mitigation: the use of efflux pumps and the separation of pathways which produce less toxic intermediates. A library of 43 efflux pumps from various organisms were screened for their potential to confer resistance to phenol, 2-phenylethanol, and styrene on an E. coli host. A pump sourced from P. putida was found to allow for increased host growth in the presence of styrene as compared to a cell with no efflux pump. The separation of styrene producing pathway was also investigated. Cells capable of performing the first and latter halves of the synthesis were allowed to grow separately and later combined in order to capitalize on the relatively lower toxicity of the intermediate, trans-cinnamate. The styrene production and yield from this separated set of cultures was compared to that resulting from the growth of cells containing the full set of styrene synthesis genes. Results from this experiment were inconclusive.
ContributorsLallmamode, Noor Atiya Jabeen (Author) / Nielsen, David (Thesis director) / Cadillo-Quiroz, Hinsby (Committee member) / Barrett, The Honors College (Contributor) / Chemical Engineering Program (Contributor) / School of Life Sciences (Contributor)
Created2015-05
Description
The goals of the styrene oxide adsorption experiments were to develop reliable isotherms of styrene oxide onto Dowex Optipore L-493 resin and onto mesoporous carbon adsorbents, in addition to determining the ideal conditions for styrene oxide production from E. coli. Adsorption is an effective means of separation used in industry to separate compounds, often organics from air and water. Styrene oxide adsorption runs without E. coli were conducted at concentrations ranging from 0.15 to 3.00 g/L with resin masses ranging from 0.1 to 0.5 g of Dowex Optipore L-493 and 0.5 to 0.75 g of mesoporous carbon adsorbent. Runs were conducted on a shake plate operating at 80 rpm for 24 hours at ambient temperature. Isotherms were developed from the results and then adsorption experiments with E. coli and L-493 were performed. Runs were conducted at glucose concentrations ranging from 20-40 g/L and resin masses of 0.100 g to 0.800 g. Samples were incubated for 72 hours and styrene oxide production was measured using an HPLC device. Specific loading values reached up to 0.356 g/g for runs without E. coli and nearly 0.003 g of styrene oxide was adsorbed by L-493 during runs with E. coli. Styrene oxide production was most effective at low resin masses and medium glucose concentrations when produced by E. coli.
ContributorsHsu, Joshua (Co-author) / Oremland, Zachary (Co-author) / Nielsen, David (Thesis director) / Staggs, Kyle (Committee member) / Barrett, The Honors College (Contributor) / Chemical Engineering Program (Contributor) / School of Sustainability (Contributor)
Created2014-05
Description
Lignin is a naturally abundant source of aromatic carbon but is largely underutilized in industry because it is difficult to decompose. Under the current study we engineered Corynebacterium glutamicum for the depolymerization of lignin with the goal of using it as raw feed for the sustainable production of valuable chemicals. C. glutamicum is a standout candidate for the depolymerization and assimilation of lignin because of its performance as an industrial producer of amino acids, resistance to aromatic compounds in lignin, and low extracellular protease activity. Three different foreign and native ligninolytic enzymes were tested in combination with three signal peptides to assess lignin degradation efficacy. At this stage, six of the nine plasmid constructs have been constructed.
ContributorsEllis, Dylan Scott (Author) / Varman, Arul Mozhy (Thesis director) / Nannenga, Brent (Committee member) / Nowroozi, Farnaz (Committee member) / Chemical Engineering Program (Contributor, Contributor) / Barrett, The Honors College (Contributor)
Created2021-05
Description
Due to the wide range of health properties flavonoids possess, flavonoids are sold in health supplements to the general public. Flavonoids are also utilized in research but have a high cost due to current production techniques. This project focuses on engineering two DNA recombinants to develop new strains of Corynebacterium glutamicum that can produce flavonoids pinocembrin and naringenin. After culturing Escherichia coli colonies containing genes of interest, the genes were collected and purified by PCR reactions. The recombinant plasmid was assembled using CPEC and successfully transformed into Escherichia coli, with plans to transform Corynebacterium glutamicum to experiment and determine which recombinant can produce more pinocembrin and naringenin. Design work for other DNA recombinants, which were not the focus of this project, was also completed.
ContributorsWong, Adam (Co-author, Co-author) / Varman, Arul Mozhy (Thesis director) / Nielsen, David (Committee member) / Chemical Engineering Program (Contributor) / Barrett, The Honors College (Contributor)
Created2019-05
Description
Cyanobacteria have the potential to efficiently produce L-serine, an industrially important amino acid, directly from CO2 and sunlight, which is a more sustainable and inexpensive source of energy as compared to current methods. The research aims to engineer a strain of Cyanobacterium Synechococcus sp. PCC 7002 that increases L-serine production by mutating regulatory mechanisms that natively inhibit its production and encoding an exporter. While an excess of L-serine was not found in the supernatant of the cell cultures, with further fine tuning of the metabolic pathway and culture conditions, high titers of L-serine can be found. With the base strain engineered, the work can be extended and optimized by deleting degradation pathways, tuning gene expression levels, optimizing growth conditions, and investigating the effects of nitrogen supplementation for the strain.
ContributorsAbed, Omar (Author) / Nielsen, David (Thesis director) / Jones, Christopher (Committee member) / Chemical Engineering Program (Contributor, Contributor) / Barrett, The Honors College (Contributor)
Created2020-05
Description
The tendon-bone junction is essential for allowing humans to transfer mechanical loads during activities. When injury does occur to this important area, current surgical techniques improperly bypass important physical and chemical gradients and do not restore proper function. It is essential to create tissue engineered scaffolds that create proper models for the region and induce healing responses for repair. To advance research into these scaffolds, electrospinning fibers and hydrogels made of norbornene functionalized hyaluronic acid (NorHA) were used to promote bone growth by adhering calcium to the material. To further improve calcium adherence, which is indicative of bone regions, a mineralization peptide was allowed to soak through the fibers. NorHA proved to be a suitable material for biomineralization experiments, showing slow calcium adherence within the first hour before accelerating in adherence over 24 hours in both fibers and hydrogels. When the mineralization peptide was implemented calcium adherence on fibers increased nearly eight times within the first 15 minutes of experimentation.
ContributorsCasey, Nathan Robert (Author) / Holloway, Julianne (Thesis director) / Tindell, Raymond (Committee member) / Fumasi, Fallon (Committee member) / Chemical Engineering Program (Contributor) / Barrett, The Honors College (Contributor)
Created2020-05
Description
The tendon-bone junction, also known as the enthesis, is crucial for properly transferring mechanical loadings during physical activity. During injury, current restoration procedures are insufficient for properly restoring tissue function. Thus, it is paramount to design alternative tissue engineered scaffolds to act as a template to the injured region and a regenerative response for tendon-bone repair. Thus, we utilized an offset electrospinning technique to fabricate a scaffold that mimics the native biochemical gradients present within the tendon-bone junction. To improve chemical gradient resolution, we implemented both insulating and conductive shields during offset electrospinning. Polycaprolactone fibers with either rhodamine or fluorescein were used to measure the scaffold fluorescent strength with distance. Without shields, at an offset of 4 cm, the chemical gradient resolution for rhodamine and fluorescein were 2.5 cm and 6.0 cm, respectively. During implementation of insulating shields, the gradient resolution for rhodamine and fluorescein improved to 2 cm and 0.5 cm, respectively. Lastly, grounded conductive shields improved gradient resolution for rhodamine and fluorescein to 1.0 cm and 1.5 cm, respectively.
ContributorsMiles, Corey (Author) / Holloway, Julianne (Thesis director) / Tindell, Raymond (Committee member) / Chemical Engineering Program (Contributor, Contributor) / Barrett, The Honors College (Contributor)
Created2019-05
Description
The field of bioprocess engineering has become an increasingly popular route to produce chemicals and fuels in a sustainable fashion. Bioprocessing is an interdisciplinary field that joins chemical engineering, metabolic engineering, and synthetic biology to tackle problems that will arise from the ongoing use of products derived from non-renewable resources. This study will overlook two effective tools that are widely used in the bioprocessing field. The first tool that was studied was strain optimization for biochemical production. This involves genetic manipulation of microbial hosts to create strains that are more efficient at producing the desired products. The second tool that was studied was adaptive laboratory evolution which is used to enhance overall cellular fitness. Enhancing the overall fitness and efficiency of these microbial production factories, allows for innovation and growth in the biochemical industry. Creating sustainable and renewable solutions for both specialty and commodity chemicals.
Strain optimization was specifically studied by enhancing inorganic carbon uptake in synechococcus sp. 7002. It is desired to have both high flux and high affinity transport for the rapid and efficient uptake of HCO3- for enhanced cell growth. The results found that the regulatory gene for carbon transporters in synechococcus genome was successfully deleted. Increasing the toxicity limits of 2-Phenylethanol was done by using adaptive laboratory evolution (ALE). ALE is a widely used practice in biotechnology studies to gain insights on mechanisms of molecular evolution and to better define the functionality of microbial cell factories. It was found that after growing E. coli BW25113 under selective conditions the genome evolved for a higher fitness medium with an increased concentration of 2-Phenylethanol. Overall, two key tools used in bioprocess engineering were successful studied to gain a better insight on the future of biochemical production industry.
Strain optimization was specifically studied by enhancing inorganic carbon uptake in synechococcus sp. 7002. It is desired to have both high flux and high affinity transport for the rapid and efficient uptake of HCO3- for enhanced cell growth. The results found that the regulatory gene for carbon transporters in synechococcus genome was successfully deleted. Increasing the toxicity limits of 2-Phenylethanol was done by using adaptive laboratory evolution (ALE). ALE is a widely used practice in biotechnology studies to gain insights on mechanisms of molecular evolution and to better define the functionality of microbial cell factories. It was found that after growing E. coli BW25113 under selective conditions the genome evolved for a higher fitness medium with an increased concentration of 2-Phenylethanol. Overall, two key tools used in bioprocess engineering were successful studied to gain a better insight on the future of biochemical production industry.
ContributorsSteeber, Gavin Lyle (Author) / Nielsen, David (Thesis director) / Jones, Christopher (Committee member) / Chemical Engineering Program (Contributor, Contributor) / Barrett, The Honors College (Contributor)
Created2019-05
Description
Obtaining access to clean water is a global problem that is becoming more important with increasing population and advancing technology. Desalination through reverse osmosis (RO) is a promising technology takes advantage of the global supply of saline water to augment its limited freshwater reservoirs. To increase RO membrane performance, the feedwater is pretreated to take any excess pollutants out before the desalination. These pretreatment membranes are susceptible to fouling, which reduces efficiency and drives up costs of the overall process. Increasing the hydrophilicity of these membranes would reduce fouling, and electrospinning is a production method of pretreatment membranes with the capability to control hydrophilicity. This work explores how the composition of electrospun fibrous membranes containing blends of hydrophilic and hydrophobic polymers affects membrane characteristics such as wettability as well as filtration performance. Nonwoven, nanoscale membranes were prepared using electrospinning with a targeted application of pretreatment in water filtration. Using a rotating collector, electrospun mats of hydrophobic poly(vinyl chloride) (PVC) and hydrophilic poly(vinyl alcohol) (PVA) were simultaneously deposited from separate polymer solutions, and their polymer compositions were then characterized using Fourier Transform Infrared (FTIR) spectra. The data did not reveal a reliable correlation established between experimental control variables like flow rate and membrane composition. However, when the membranes' hydrophilicity was analyzed using static water contact angle measurements, a trend between PVA content and hydrophilicity was seen. This shows that the hypothesis of increasing PVA content to increase hydrophilicity is reliable, but with the current experimental design the PVA content is not controllable. Therefore, the primary future work is making a new experimental setup that will be able to better control membrane composition. Filtration studies to test for fouling and size exclusion will be performed once this control is obtained.
ContributorsTronstad, Zachary (Author) / Green, Matthew (Thesis director) / Holloway, Julianne (Committee member) / Epps, Thomas (Committee member) / Chemical Engineering Program (Contributor) / Materials Science and Engineering Program (Contributor) / Barrett, The Honors College (Contributor)
Created2018-12