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- All Subjects: Phosphides
Description
The evolution of photosynthesis caused the oxygen-rich atmosphere in which we thrive today. Although the reaction centers involved in oxygenic photosynthesis probably evolved from a protein like the reaction centers in modern anoxygenic photosynthesis, modern anoxygenic reaction centers are poorly understood. One such anaerobic reaction center is found in Heliobacterium modesticaldum. Here, the photosynthetic properties of H. modesticaldum are investigated, especially as they pertain to its unique photochemical reaction center.
The first part of this dissertation describes the optimization of the previously established protocol for the H. modesticaldum reaction center isolation. Subsequently, electron transfer is characterized by ultrafast spectroscopy; the primary electron acceptor, a chlorophyll a derivative, is reduced in ~25 ps, and forward electron transfer occurs directly to a 4Fe-4S cluster in ~650 ps without the requirement for a quinone intermediate. A 2.2-angstrom resolution X-ray crystal structure of the homodimeric heliobacterial reaction center is solved, which is the first ever homodimeric reaction center structure to be solved, and is discussed as it pertains to the structure-function relationship in energy and electron transfer. The structure has a transmembrane helix arrangement similar to that of Photosystem I, but differences in antenna and electron transfer cofactor positions explain variations in biophysical comparisons. The structure is then compared with other reaction centers to infer evolutionary hypotheses suggesting that the ancestor to all modern reaction centers could reduce mobile quinones, and that Photosystem I added lower energy cofactors to its electron transfer chain to avoid the formation of singlet oxygen.
In the second part of this dissertation, hydrogen production rates of H. modesticaldum are quantified in multiple conditions. Hydrogen production only occurs in cells grown without ammonia, and is further increased by removal of N2. These results are used to propose a scheme that summarizes the hydrogen-production metabolism of H. modesticaldum, in which electrons from pyruvate oxidation are shuttled through an electron transport pathway including the reaction center, ultimately reducing nitrogenase. In conjunction, electron microscopy images of H. modesticaldum are shown, which confirm that extended membrane systems are not exhibited by heliobacteria.
The first part of this dissertation describes the optimization of the previously established protocol for the H. modesticaldum reaction center isolation. Subsequently, electron transfer is characterized by ultrafast spectroscopy; the primary electron acceptor, a chlorophyll a derivative, is reduced in ~25 ps, and forward electron transfer occurs directly to a 4Fe-4S cluster in ~650 ps without the requirement for a quinone intermediate. A 2.2-angstrom resolution X-ray crystal structure of the homodimeric heliobacterial reaction center is solved, which is the first ever homodimeric reaction center structure to be solved, and is discussed as it pertains to the structure-function relationship in energy and electron transfer. The structure has a transmembrane helix arrangement similar to that of Photosystem I, but differences in antenna and electron transfer cofactor positions explain variations in biophysical comparisons. The structure is then compared with other reaction centers to infer evolutionary hypotheses suggesting that the ancestor to all modern reaction centers could reduce mobile quinones, and that Photosystem I added lower energy cofactors to its electron transfer chain to avoid the formation of singlet oxygen.
In the second part of this dissertation, hydrogen production rates of H. modesticaldum are quantified in multiple conditions. Hydrogen production only occurs in cells grown without ammonia, and is further increased by removal of N2. These results are used to propose a scheme that summarizes the hydrogen-production metabolism of H. modesticaldum, in which electrons from pyruvate oxidation are shuttled through an electron transport pathway including the reaction center, ultimately reducing nitrogenase. In conjunction, electron microscopy images of H. modesticaldum are shown, which confirm that extended membrane systems are not exhibited by heliobacteria.
ContributorsGisriel, Christopher J (Author) / Redding, Kevin E (Thesis advisor) / Jones, Anne K (Committee member) / Allen, James P. (Committee member) / Arizona State University (Publisher)
Created2017
Description
The molecular modification of semiconductors has applications in energy
conversion and storage, including artificial photosynthesis. In nature, the active sites of
enzymes are typically earth-abundant metal centers and the protein provides a unique
three-dimensional environment for effecting catalytic transformations. Inspired by this
biological architecture, a synthetic methodology using surface-grafted polymers with
discrete chemical recognition sites for assembling human-engineered catalysts in three-dimensional
environments is presented. The use of polymeric coatings to interface cobalt-containing
catalysts with semiconductors for solar fuel production is introduced in
Chapter 1. The following three chapters demonstrate the versatility of this modular
approach to interface cobalt-containing catalysts with semiconductors for solar fuel
production. The catalyst-containing coatings are characterized through a suite of
spectroscopic techniques, including ellipsometry, grazing angle attenuated total reflection
Fourier transform infrared spectroscopy (GATR-FTIR) and x-ray photoelectron (XP)
spectroscopy. It is demonstrated that the polymeric interface can be varied to control the
surface chemistry and photoelectrochemical response of gallium phosphide (GaP) (100)
electrodes by using thin-film coatings comprising surface-immobilized pyridyl or
imidazole ligands to coordinate cobaloximes, known catalysts for hydrogen evolution.
The polymer grafting chemistry and subsequent cobaloxime attachment is applicable to
both the (111)A and (111)B crystal face of the gallium phosphide (GaP) semiconductor,
providing insights into the surface connectivity of the hard/soft matter interface and
demonstrating the applicability of the UV-induced immobilization of vinyl monomers to
a range of GaP crystal indices. Finally, thin-film polypyridine surface coatings provide a
molecular interface to assemble cobalt porphyrin catalysts for hydrogen evolution onto
GaP. In all constructs, photoelectrochemical measurements confirm the hybrid
photocathode uses solar energy to power reductive fuel-forming transformations in
aqueous solutions without the use of organic acids, sacrificial chemical reductants, or
electrochemical forward biasing.
conversion and storage, including artificial photosynthesis. In nature, the active sites of
enzymes are typically earth-abundant metal centers and the protein provides a unique
three-dimensional environment for effecting catalytic transformations. Inspired by this
biological architecture, a synthetic methodology using surface-grafted polymers with
discrete chemical recognition sites for assembling human-engineered catalysts in three-dimensional
environments is presented. The use of polymeric coatings to interface cobalt-containing
catalysts with semiconductors for solar fuel production is introduced in
Chapter 1. The following three chapters demonstrate the versatility of this modular
approach to interface cobalt-containing catalysts with semiconductors for solar fuel
production. The catalyst-containing coatings are characterized through a suite of
spectroscopic techniques, including ellipsometry, grazing angle attenuated total reflection
Fourier transform infrared spectroscopy (GATR-FTIR) and x-ray photoelectron (XP)
spectroscopy. It is demonstrated that the polymeric interface can be varied to control the
surface chemistry and photoelectrochemical response of gallium phosphide (GaP) (100)
electrodes by using thin-film coatings comprising surface-immobilized pyridyl or
imidazole ligands to coordinate cobaloximes, known catalysts for hydrogen evolution.
The polymer grafting chemistry and subsequent cobaloxime attachment is applicable to
both the (111)A and (111)B crystal face of the gallium phosphide (GaP) semiconductor,
providing insights into the surface connectivity of the hard/soft matter interface and
demonstrating the applicability of the UV-induced immobilization of vinyl monomers to
a range of GaP crystal indices. Finally, thin-film polypyridine surface coatings provide a
molecular interface to assemble cobalt porphyrin catalysts for hydrogen evolution onto
GaP. In all constructs, photoelectrochemical measurements confirm the hybrid
photocathode uses solar energy to power reductive fuel-forming transformations in
aqueous solutions without the use of organic acids, sacrificial chemical reductants, or
electrochemical forward biasing.
ContributorsBeiler, Anna Mary (Author) / Moore, Gary F. (Thesis advisor) / Moore, Thomas A. (Thesis advisor) / Redding, Kevin E. (Committee member) / Allen, James P. (Committee member) / Arizona State University (Publisher)
Created2018
Description
The FoF1 ATP synthase is a molecular motor critical to the metabolism of virtually all life forms, and it acts in the manner of a hydroelectric generator. The F1 complex contains an (αβ)3 (hexamer) ring in which catalysis occurs, as well as a rotor comprised by subunit-ε in addition to the coiled-coil and globular foot domains of subunit-γ. The F1 complex can hydrolyze ATP in vitro in a manner that drives counterclockwise (CCW) rotation, in 120° power strokes, as viewed from the positive side of the membrane. The power strokes that occur in ≈ 300 μsec are separated by catalytic dwells that occur on a msec time scale. A single-molecule rotation assay that uses the intensity of polarized light, scattered from a 75 × 35 nm gold nanorod, determined the average rotational velocity of the power stroke (ω, in degrees/ms) as a function of the rotational position of the rotor (θ, in degrees, measured in reference to the catalytic dwell). The velocity is not constant but rather accelerates and decelerates in two Phases. Phase-1 (0° - 60°) is believed to derive power from elastic energy in the protein. At concentrations of ATP that limit the rate of ATP hydrolysis, the rotor can stop for an ATP-binding dwell during Phase-1. Although the most probable position that the ATP-binding dwell occurs is 40° after the catalytic dwell, the ATP-binding dwell can occur at any rotational position during Phase-1 of the power stroke. Phase-2 of the power stroke (60° - 120°) is believed to be powered by the ATP-binding induced closure of the lever domain of a β-subunit (as it acts as a cam shaft against the γ-subunit). Algorithms were written, to sort and analyze F1-ATPase power strokes, to determine the average rotational velocity profile of power strokes as a function of the rotational position at which the ATP-binding dwell occurs (θATP-bd), and when the ATP-binding dwell is absent. Sorting individual ω(θ) curves, as a function of θATP-bd, revealed that a dependence of ω on
θATP-bd exists. The ATP-binding dwell can occur even at saturating ATP concentrations. We report that ω follows a distinct pattern in the vicinity of the ATP-binding dwell, and that the ω(θ) curve contains the same oscillations within it regardless of θATP-bd. We observed that an acceleration/deceleration dependence before and after the ATP-binding dwell, respectively, remained for increasing time intervals as the dwell occurred later in Phase-1, to a maximum of ≈ 40°. The results were interpreted in terms of a model in which the ATP-binding dwell results from internal drag at a variable position on the γε rotor.
θATP-bd exists. The ATP-binding dwell can occur even at saturating ATP concentrations. We report that ω follows a distinct pattern in the vicinity of the ATP-binding dwell, and that the ω(θ) curve contains the same oscillations within it regardless of θATP-bd. We observed that an acceleration/deceleration dependence before and after the ATP-binding dwell, respectively, remained for increasing time intervals as the dwell occurred later in Phase-1, to a maximum of ≈ 40°. The results were interpreted in terms of a model in which the ATP-binding dwell results from internal drag at a variable position on the γε rotor.
ContributorsBukhari, Zain Aziz (Author) / Frasch, Wayne D. (Thesis director) / Allen, James P. (Committee member) / Redding, Kevin (Committee member) / School of Molecular Sciences (Contributor) / Department of Physics (Contributor) / Barrett, The Honors College (Contributor)
Created2016-12