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Bexarotene (Targretin®) is an FDA approved drug used to treat cutaneous T-cell lymphoma (CTCL), as well as off-label treatments for various cancers and neurodegenerative diseases. Previous research has indicated that bexarotene has a specific affinity for retinoid X receptors (RXR), which allows bexarotene to act as a ligand-activated-transcription factor

Bexarotene (Targretin®) is an FDA approved drug used to treat cutaneous T-cell lymphoma (CTCL), as well as off-label treatments for various cancers and neurodegenerative diseases. Previous research has indicated that bexarotene has a specific affinity for retinoid X receptors (RXR), which allows bexarotene to act as a ligand-activated-transcription factor and in return control cell differentiation and proliferation. Bexarotene targets RXR homodimerization to drive transcription of tumor suppressing genes; however, adverse reactions occur simultaneously when bound to other nuclear receptors. In this study, we used novel bexarotene analogs throughout 5 iterations synthesized in the laboratory of Dr. Wagner to test for their potency and ability to bind RXR. The aim of our study is to quantitatively measure RXR homodimerization driven by bexarotene analogs using a yeast two-hybrid system. Our results suggests there to be several compounds with higher protein activity than bexarotene, particularly in generations 3.0 and 5.0. This higher affinity for RXR homodimers may help scientists identify a compound that will minimize adverse effects and toxicity of bexarotene and serve as a better cancer treatment alternative.
ContributorsSeto, David Hua (Author) / Marshall, Pamela (Thesis director) / Wagner, Carl (Committee member) / Barrett, The Honors College (Contributor) / School of Mathematical and Natural Sciences (Contributor) / School of Social and Behavioral Sciences (Contributor)
Created2015-05
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Description
Bexarotene is a commercially produced drug commonly known as Targetin presecribed to treat cutaneous T-cell lymphoma (CTCL). Bex mimics the actions of natural 9-cis retinoic acid in the body, which are derived from Vitamin A in the diet and boost the immune system. Bex has been shown to be effective

Bexarotene is a commercially produced drug commonly known as Targetin presecribed to treat cutaneous T-cell lymphoma (CTCL). Bex mimics the actions of natural 9-cis retinoic acid in the body, which are derived from Vitamin A in the diet and boost the immune system. Bex has been shown to be effective in the treatment of multiple types of cancer, including lung cancer. However, the disadvantages of using Bex include increased instances of hypothyroidism and excessive concentrations of blood triglycerides. If an analog of Bex can be developed which retains high affinity RXR binding similar to the 9-cis retinoic acid while exhibiting less interference for heterodimerization pathways, it would be of great clinical significance in improving the quality of life for patients with CTCL. This thesis will detail the biological profiling of additional novel (Generation Two) analogs, which are currently in submission for publication, as well as that of Generation Three analogs. The results from these studies reveal that specific alterations in the core structure of the Bex "parent" compound structure can have dramatic effects in modifying the biological activity of RXR agonists.
ContributorsYang, Joanna (Author) / Jurutka, Peter (Thesis director) / Wagner, Carl (Committee member) / Hibler, Elizabeth (Committee member) / Barrett, The Honors College (Contributor)
Created2012-05
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Description
The process of communicating science between the general public and scientific community has been marked by several challenges in the modern setting. Namely, scientists’ trepidation toward misinterpretation, jeopardization of professional reputability, and perception of two distinct arenas of communication has led to the perpetuation of the deficit model of communication.

The process of communicating science between the general public and scientific community has been marked by several challenges in the modern setting. Namely, scientists’ trepidation toward misinterpretation, jeopardization of professional reputability, and perception of two distinct arenas of communication has led to the perpetuation of the deficit model of communication. This model is exceptionally limiting as it effectively removes the scientists from the public sphere and can have devastating societal repercussions. The dialogue model of communication is a much more effective communicative model for the modern setting but has been met with resistance in its adoption. As communication as a whole is grounded in multiple foundational disciplines of psychology, philosophy, linguistics, and other fields, it would be apparent that the adoption of the principles of polymathy would serve to better prepare scientists to engage in mass communication with the public. As polymathy is a lifelong pursuit, the implementation of narrative training into collegiate undergraduate science curriculum would serve as a particularly potent beginning. That is, narrative's ability to reach near-universal audiences, enhance the recall and comprehension of complex subject matter, and forge an empathetic connection essential to effective communication is uniquely suited in ensuring a more effective communicative dynamic between the scientific community and the general public. As such, this thesis serves to advocate the adoption of narrative-based communicative training into undergraduate science curriculum not as separate courses, but rather as direct incorporation. This would serve to both revitalize polymathy in the modern age and prepare the next generation of scientists to be better equipped for the public dialogue.
ContributorsCoker, Keaton M (Author) / Ramsey, Ramsey E. (Thesis director) / Wentzel, Bonnie (Committee member) / School of Social and Behavioral Sciences (Contributor) / School of Mathematical and Natural Sciences (Contributor) / Barrett, The Honors College (Contributor)
Created2020-05
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Description
Forensic science is the application of science to matters of law, especially criminal investigation and procedure.​ ForenSICK Science​, on the other hand, is an educational YouTube channel. It was created in early 2019 after listening to two people on a podcast confidently preach surprisingly inaccurate information about forensic science. My

Forensic science is the application of science to matters of law, especially criminal investigation and procedure.​ ForenSICK Science​, on the other hand, is an educational YouTube channel. It was created in early 2019 after listening to two people on a podcast confidently preach surprisingly inaccurate information about forensic science. My goal in the creation of the channel was to give people the proper information regarding the practice. This goal grew to encompass several different fields including continued education practices, informal and nonformal learning, and combating “science speak.” Using YouTube as a tool in this journey was the first step in combating forensic inaccuracies.
Created2020-05
Description
Desert ecosystems are one of the fastest urbanizing areas on the planet. This rapid shift has the potential to alter the abundances and species richness of herbivore and plant communities. Herbivores, for example, are expected to be more abundant in urban desert remnant parks located within cities due to anthropogenic

Desert ecosystems are one of the fastest urbanizing areas on the planet. This rapid shift has the potential to alter the abundances and species richness of herbivore and plant communities. Herbivores, for example, are expected to be more abundant in urban desert remnant parks located within cities due to anthropogenic activities that concentrate food resources and reduce native predator populations. Despite this assumption, previous research conducted around Phoenix has shown that top-down herbivory led to equally reduced plant biomass. It is unclear if this insignificant difference in herbivory at rural and urban sites is due to unaltered desert herbivore populations or altered activity levels that counteract abundance differences. Vertebrate herbivore populations were surveyed at four sites inside and four sites outside of the core of Phoenix during fall 2014 and spring 2015 in order to determine whether abundances and richness differ significantly between urban and rural sites. In order to survey species composition and abundance at these sites, 100 Sherman traps and 8 larger wire traps that are designed to attract and capture small vertebrates such as mice, rats, and squirrels, were set at each site for two consecutive trap nights. Results suggest that the commonly assumed effect of urbanization on herbivore abundances does not apply to small rodent herbivore populations in a desert city, as overall small rodent abundances were statistically similar regardless of location. Though a significant difference was not found for species richness, a significant difference between small rodent genera richness at these sites was observed.
ContributorsAlvarez Guevara, Jessica Noemi (Co-author) / Ball, Becky A. (Co-author, Thesis director) / Hall, Sharon J. (Co-author) / Bateman, Heather (Committee member) / School of Sustainability (Contributor) / School of Mathematical and Natural Sciences (Contributor) / Barrett, The Honors College (Contributor)
Created2016-05
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Description

Triple Negative Breast Cancer (TNBC), indicated by the absence of estrogen, progesterone and human epidermal growth factor receptor 2 (HER2), is the most aggressive form of breast cancer characterized by high rates of metastasis and low survival. Among those diagnosed with TNBC, 34% contain Inhibitor of Growth 4 (ING4) deletion

Triple Negative Breast Cancer (TNBC), indicated by the absence of estrogen, progesterone and human epidermal growth factor receptor 2 (HER2), is the most aggressive form of breast cancer characterized by high rates of metastasis and low survival. Among those diagnosed with TNBC, 34% contain Inhibitor of Growth 4 (ING4) deletion that is associated with poor patient outcomes. We previously showed that ING4 negatively regulates NF-B in breast cancer. Previous studies show parthenolide, a compound found in feverfew (Tanacetum parthenium) to inhibit NF-B in cervical and gastric cancer. We hypothesized that parthenolide inhibits cytokine-induced activation of NF-B in ING4 deficient TNBC cells. To test the hypothesis, previously established vectors, v2, ING4 wildtype and v2h1, ING4-deleted were synthesized in MDA-MB 231, a TNBC cell line, using a CRISPR/Cas9 system. Inflammatory cytokines, IL-1 and TNF, were tested in ING4 wildtype or ING4 deleted cells for elicited phosphorylation of NF-B, proliferation, and migration in the presence or absence of parthenolide. The results showed that TNF or IL-1 induced translocation phosphorylation of NF-B regardless of ING4 deletion. ING4 inhibited proinflammatory cytokine induced pp65, consistent with previous studies demonstrating the negative regulation of NF-B in ING4-sufficent cell lines. We found the optimal working dose of parthenolide, 100nM, had no effect on cell proliferation in the presence or absence of IL-1. Parthenolide inhibited IL-1induced phosphorylation of NF-B regardless of ING4 deletion. Parthenolide inhibited TNF-induced phosphorylation of NF-B in ING4-deleted cell lines. Moreover, parthenolide induced migration of TNBC cells regardless of ING4 presence of absence. TNF and parthenolide treated samples in ING4-deleted cell lines were found to inhibit cell migration to basal level. These results demonstrate the difference in inhibitory mechanism of parthenolide in induced phosphorylation of NF-B through proinflammatory cytokines TNF or IL-1This is demonstrated by the exclusivity of parthenolide inhibition of TNF induced phosphorylation of NF-B in ING4-deleted TNBC cell line. In contrast, parthenolide inhibition of IL-1 induced phosphorylation of NF-B occurred regardless of ING4 deletion. These results may inhibit parthenolide as an alternative to those with ING4-deleted TNBC due to its role in inducing cancer phenotype cell migration.

ContributorsPedroza, Morgan Arielle (Author) / Kim, Suwon (Thesis director) / Wagner, Carl (Thesis director) / Bussey, Kimberly (Committee member) / Barrett, The Honors College (Contributor) / School of Mathematical and Natural Sciences (Contributor)
Created2021-12
Description
My Honors Thesis/ Creative Project was an collection of art pieces that were based on a research done at West Campus in Dr. Weidner's forensic entomology laboratory. In this research, two swine carcasses were place outdoors for 21 days during the four seasons. The goal was to collect insects that

My Honors Thesis/ Creative Project was an collection of art pieces that were based on a research done at West Campus in Dr. Weidner's forensic entomology laboratory. In this research, two swine carcasses were place outdoors for 21 days during the four seasons. The goal was to collect insects that approached and colonized the carcasses. The collected data can be used to determine the TOC (time of colonization) of some insects; thus, it can help to calculate the PMI (postmortem interval). Different collection were used like larvae rearing, pitfalls, netting, and hand collection. The larvae were reared into adulthood and then identified into a species. The rest of the insects were identified into orders. To present this information, the data collected from the two carcasses was combined to make the presentation easier to understand. I created four circular canvases to present the collection of flies in each check. It shows both flies were reared and which were seen or collected. The other series of work that I sculpted were 120 ceramics flowers to represent the insects orders that were observed in each season and check. During my thesis defense, I presented the research project, and how my project can help people understand this research.
ContributorsMunoz Zavala, Jaira (Author) / Weidner, Lauren (Thesis director) / Meeds, Andrew (Committee member) / Neubauer, Mary (Committee member) / Barrett, The Honors College (Contributor) / School of Mathematical and Natural Sciences (Contributor) / School of Art (Contributor)
Created2023-12
Description

Pollution causes many health problems in the modern world and the desert climates struggle with pollution in unique ways. In the Sonoran Desert, the research was conducted with the purpose of expanding the knowledge of the topic in this area. A literature review was conducted based on air, soil and

Pollution causes many health problems in the modern world and the desert climates struggle with pollution in unique ways. In the Sonoran Desert, the research was conducted with the purpose of expanding the knowledge of the topic in this area. A literature review was conducted based on air, soil and noise pollution in the region. The Sonoran Desert has high levels of carcinogenic elements along with other pollutants due to the main industries of mining, agriculture and manufacturing. Overall, these findings show people in desert climates deal with high levels of pollutants.

ContributorsWest, Katherine (Author) / Hackney Price, Jennifer (Thesis director) / Savalli, Udo (Committee member) / Barrett, The Honors College (Contributor) / School of Mathematical and Natural Sciences (Contributor)
Created2023-05
Description

The ever-increasing importance of cancer and neurodegenerative diseases continues to grow as populations across the world are affected by death and aging. The vitamin A (RXR) and vitamin D (VDR) receptor pathways offer promising potential to aid in treatment of cancer and Alzheimer’s disease. This thesis discusses the potential application

The ever-increasing importance of cancer and neurodegenerative diseases continues to grow as populations across the world are affected by death and aging. The vitamin A (RXR) and vitamin D (VDR) receptor pathways offer promising potential to aid in treatment of cancer and Alzheimer’s disease. This thesis discusses the potential application of novel analogs of Bexarotene (RXR agonist), MeTC7 (a new potent VDR antagonist), and vitamin D as possible therapeutics for cancer and Alzheimer’s disease.

ContributorsHong, Jennifer (Author) / Jurutka, Peter (Thesis director) / Wagner, Carl (Committee member) / Marshall, Pamela (Committee member) / Barrett, The Honors College (Contributor) / School of Mathematical and Natural Sciences (Contributor)
Created2023-05
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Description

Aboveground-belowground relationships between vegetation and its associated soil biotic community play an important role in every terrestrial ecosystem for nutrient cycling and soil health maintenance. Deserts are especially sensitive to change and little is known about Sonoran Desert soil microbiota, while exotic herbaceous species are increasingly invading into the ecosystem

Aboveground-belowground relationships between vegetation and its associated soil biotic community play an important role in every terrestrial ecosystem for nutrient cycling and soil health maintenance. Deserts are especially sensitive to change and little is known about Sonoran Desert soil microbiota, while exotic herbaceous species are increasingly invading into the ecosystem with other harmful effects. In many other environments, soil communities have been associated with both plant species and plant functional type. The soil community food web depends on the sustenance brought by vegetation, and different soil community members are adapted to different diets. In this paper, we hypothesized that invasive plants would cause belowground soil communities to have greater abundance and lesser diversity than those under native, more locally established plants. To test this hypothesis, we selected four desert understory plant taxa: one native grass, one native forb, one invasive grass, and one invasive forb. We predicted that the invasive plants would be associated with a greater count of microarthropods per unit mass of soil but lesser microarthropod species diversity. The invasive plants were not statistically associated with a greater count of microarthropods per kilogram of soil nor lesser microarthropod species diversity. There was not a significant difference in abundance in the microarthropod categories between native and invasive plants, so the hypothesis was rejected. However, the invasive Erodium cicutarium was found to harbor high soil mite abundance, which warrants further study, and it is yet to be seen whether soil moisture and proximity to trees played a role in the data. The results of this study should help in generating more informed hypotheses regarding desert aboveground-belowground relationships.

ContributorsStern, Argon (Author) / Ball, Becky (Thesis director) / Sanin, Maria (Committee member) / Barrett, The Honors College (Contributor) / School of Mathematical and Natural Sciences (Contributor)
Created2022-05