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- All Subjects: Statistics
- All Subjects: BART
- Creators: Zheng, Yi
Description
In the last decade, the population of honey bees across the globe has declined sharply leaving scientists and bee keepers to wonder why? Amongst all nations, the United States has seen some of the greatest declines in the last 10 plus years. Without a definite explanation, Colony Collapse Disorder (CCD) was coined to explain the sudden and sharp decline of the honey bee colonies that beekeepers were experiencing. Colony collapses have been rising higher compared to expected averages over the years, and during the winter season losses are even more severe than what is normally acceptable. There are some possible explanations pointing towards meteorological variables, diseases, and even pesticide usage. Despite the cause of CCD being unknown, thousands of beekeepers have reported their losses, and even numbers of infected colonies and colonies under certain stressors in the most recent years. Using the data that was reported to The United States Department of Agriculture (USDA), as well as weather data collected by The National Centers for Environmental Information (NOAA) and the National Centers for Environmental Information (NCEI), regression analysis was used to investigate honey bee colonies to find relationships between stressors in honey bee colonies and meteorological variables, and colony collapses during the winter months. The regression analysis focused on the winter season, or quarter 4 of the year, which includes the months of October, November, and December. In the model, the response variables was the percentage of colonies lost in quarter 4. Through the model, it was concluded that certain weather thresholds and the percentage increase of colonies under certain stressors were related to colony loss.
ContributorsVasquez, Henry Antony (Author) / Zheng, Yi (Thesis director) / Saffell, Erinanne (Committee member) / School of Mathematical and Statistical Sciences (Contributor) / Barrett, The Honors College (Contributor)
Created2018-05
Description
Problems related to alcohol consumption cause not only extra economic expenses, but are an expense to the health of both drinkers and non-drinkers due to the harm directly and indirectly caused by alcohol consumption. Investigating predictors and reasons for alcohol-related problems is of importance, as alcohol-related problems could be prevented by quitting or limiting consumption of alcohol. We were interested in predicting alcohol-related problems using multiple linear regression and regression trees, and then comparing the regressions to the tree. Impaired control, anxiety sensitivity, mother permissiveness, father permissiveness, gender, and age were included as predictors. The data used was comprised of participants (n=835) sampled from students at Arizona State University. A multiple linear regression without interactions, multiple linear regression with two-way interactions and squares, and a regression tree were used and compared. The regression and the tree had similar results. Multiple interactions of variables predicted alcohol-related problems. Overall, the tree was easier to interpret than the regressions, however, the regressions provided specific predicted alcohol-related problems scores, whereas the tree formed large groups and had a predicted alcohol-related problems score for each group. Nevertheless, the tree still predicted alcohol-related problems nearly as well, if not better than the regressions.
ContributorsVoorhies, Kirsten Reed (Author) / McCulloch, Robert (Thesis director) / Zheng, Yi (Committee member) / Patock-Peckham, Julie (Committee member) / School of Mathematical and Statistical Sciences (Contributor) / Department of Psychology (Contributor) / Barrett, The Honors College (Contributor)
Created2016-12
Description
Goodness-of-fit test is a hypothesis test used to test whether a given model fit the data well. It is extremely difficult to find a universal goodness-of-fit test that can test all types of statistical models. Moreover, traditional Pearson’s chi-square goodness-of-fit test is sometimes considered to be an omnibus test but not a directional test so it is hard to find the source of poor fit when the null hypothesis is rejected and it will lose its validity and effectiveness in some of the special conditions. Sparseness is such an abnormal condition. One effective way to overcome the adverse effects of sparseness is to use limited-information statistics. In this dissertation, two topics about constructing and using limited-information statistics to overcome sparseness for binary data will be included. In the first topic, the theoretical framework of pairwise concordance and the transformation matrix which is used to extract the corresponding marginals and their generalizations are provided. Then a series of new chi-square test statistics and corresponding orthogonal components are proposed, which are used to detect the model misspecification for longitudinal binary data. One of the important conclusions is, the test statistic $X^2_{2c}$ can be taken as an extension of $X^2_{[2]}$, the second-order marginals of traditional Pearson’s chi-square statistic. In the second topic, the research interest is to investigate the effect caused by different intercept patterns when using Lagrange multiplier (LM) test to find the source of misfit for two items in 2-PL IRT model. Several other directional chi-square test statistics are taken into comparison. The simulation results showed that the intercept pattern does affect the performance of goodness-of-fit test, especially the power to find the source of misfit if the source of misfit does exist. More specifically, the power is directly affected by the `intercept distance' between two misfit variables. Another discovery is, the LM test statistic has the best balance between the accurate Type I error rates and high empirical power, which indicates the LM test is a robust test.
ContributorsXu, Jinhui (Author) / Reiser, Mark (Thesis advisor) / Kao, Ming-Hung (Committee member) / Wilson, Jeffrey (Committee member) / Zheng, Yi (Committee member) / Edwards, Michael (Committee member) / Arizona State University (Publisher)
Created2022
Description
This dissertation centers on treatment effect estimation in the field of causal inference, and aims to expand the toolkit for effect estimation when the treatment variable is binary. Two new stochastic tree-ensemble methods for treatment effect estimation in the continuous outcome setting are presented. The Accelerated Bayesian Causal Forrest (XBCF) model handles variance via a group-specific parameter, and the Heteroskedastic version of XBCF (H-XBCF) uses a separate tree ensemble to learn covariate-dependent variance. This work also contributes to the field of survival analysis by proposing a new framework for estimating survival probabilities via density regression. Within this framework, the Heteroskedastic Accelerated Bayesian Additive Regression Trees (H-XBART) model, which is also developed as part of this work, is utilized in treatment effect estimation for right-censored survival outcomes. All models have been implemented as part of the XBART R package, and their performance is evaluated via extensive simulation studies with appropriate sets of comparators. The contributed methods achieve similar levels of performance, while being orders of magnitude (sometimes as much as 100x) faster than comparator state-of-the-art methods, thus offering an exciting opportunity for treatment effect estimation in the large data setting.
ContributorsKrantsevich, Nikolay (Author) / Hahn, P Richard (Thesis advisor) / McCulloch, Robert (Committee member) / Zhou, Shuang (Committee member) / Lan, Shiwei (Committee member) / He, Jingyu (Committee member) / Arizona State University (Publisher)
Created2023
Description
Tracking disease cases is an essential task in public health; however, tracking the number of cases of a disease may be difficult not every infection can be recorded by public health authorities. Notably, this may happen with whole country measles case reports, even such countries with robust registration systems. Eilertson et al. (2019) propose using a state-space model combined with maximum likelihood methods for estimating measles transmission. A Bayesian approach that uses particle Markov Chain Monte Carlo (pMCMC) is proposed to estimate the parameters of the non-linear state-space model developed in Eilertson et al. (2019) and similar previous studies. This dissertation illustrates the performance of this approach by calculating posterior estimates of the model parameters and predictions of the unobserved states in simulations and case studies. Also, Iteration Filtering (IF2) is used as a support method to verify the Bayesian estimation and to inform the selection of prior distributions. In the second half of the thesis, a birth-death process is proposed to model the unobserved population size of a disease vector. This model studies the effect of a disease vector population size on a second affected population. The second population follows a non-homogenous Poisson process when conditioned on the vector process with a transition rate given by a scaled version of the vector population. The observation model also measures a potential threshold event when the host species population size surpasses a certain level yielding a higher transmission rate. A maximum likelihood procedure is developed for this model, which combines particle filtering with the Minorize-Maximization (MM) algorithm and extends the work of Crawford et al. (2014).
ContributorsMartinez Rivera, Wilmer Osvaldo (Author) / Fricks, John (Thesis advisor) / Reiser, Mark (Committee member) / Zhou, Shuang (Committee member) / Cheng, Dan (Committee member) / Lan, Shiwei (Committee member) / Arizona State University (Publisher)
Created2022
Description
Career information for degrees in statistics and data science according to frequently asked questions and twelve major categories of interest: arts, business, education, engineering, environment, government, law, medicine, science, social science, sports, and technology.
ContributorsDerby-Lawson, Lili (Author) / Zheng, Yi (Thesis director) / Zhang, Helen (Committee member) / Barrett, The Honors College (Contributor) / School of Mathematical and Statistical Sciences (Contributor) / School of International Letters and Cultures (Contributor) / Economics Program in CLAS (Contributor) / School of Sustainability (Contributor)
Created2023-05
Description
This dissertation covers several topics in machine learning and causal inference. First, the question of “feature selection,” a common byproduct of regularized machine learning methods, is investigated theoretically in the context of treatment effect estimation. This involves a detailed review and extension of frameworks for estimating causal effects and in-depth theoretical study. Next, various computational approaches to estimating causal effects with machine learning methods are compared with these theoretical desiderata in mind. Several improvements to current methods for causal machine learning are identified and compelling angles for further study are pinpointed. Finally, a common method used for “explaining” predictions of machine learning algorithms, SHAP, is evaluated critically through a statistical lens.
ContributorsHerren, Andrew (Author) / Hahn, P Richard (Thesis advisor) / Kao, Ming-Hung (Committee member) / Lopes, Hedibert (Committee member) / McCulloch, Robert (Committee member) / Zhou, Shuang (Committee member) / Arizona State University (Publisher)
Created2023
Description
This dissertation explores applications of machine learning methods in service of the design of screening tests, which are ubiquitous in applications from social work, to criminology, to healthcare. In the first part, a novel Bayesian decision theory framework is presented for designing tree-based adaptive tests. On an application to youth delinquency in Honduras, the method produces a 15-item instrument that is almost as accurate as a full-length 150+ item test. The framework includes specific considerations for the context in which the test will be administered, and provides uncertainty quantification around the trade-offs of shortening lengthy tests. In the second part, classification complexity is explored via theoretical and empirical results from statistical learning theory, information theory, and empirical data complexity measures. A simulation study that explicitly controls two key aspects of classification complexity is performed to relate the theoretical and empirical approaches. Throughout, a unified language and notation that formalizes classification complexity is developed; this same notation is used in subsequent chapters to discuss classification complexity in the context of a speech-based screening test. In the final part, the relative merits of task and feature engineering when designing a speech-based cognitive screening test are explored. Through an extensive classification analysis on a clinical speech dataset from patients with normal cognition and Alzheimer’s disease, the speech elicitation task is shown to have a large impact on test accuracy; carefully performed task and feature engineering are required for best results. A new framework for objectively quantifying speech elicitation tasks is introduced, and two methods are proposed for automatically extracting insights into the aspects of the speech elicitation task that are driving classification performance. The dissertation closes with recommendations for how to evaluate the obtained insights and use them to guide future design of speech-based screening tests.
ContributorsKrantsevich, Chelsea (Author) / Hahn, P. Richard (Thesis advisor) / Berisha, Visar (Committee member) / Lopes, Hedibert (Committee member) / Renaut, Rosemary (Committee member) / Zheng, Yi (Committee member) / Arizona State University (Publisher)
Created2023
Description
This dissertation comprises two projects: (i) Multiple testing of local maxima for detection of peaks and change points with non-stationary noise, and (ii) Height distributions of critical points of smooth isotropic Gaussian fields: computations, simulations and asymptotics. The first project introduces a topological multiple testing method for one-dimensional domains to detect signals in the presence of non-stationary Gaussian noise. The approach involves conducting tests at local maxima based on two observation conditions: (i) the noise is smooth with unit variance and (ii) the noise is not smooth where kernel smoothing is applied to increase the signal-to-noise ratio (SNR). The smoothed signals are then standardized, which ensures that the variance of the new sequence's noise becomes one, making it possible to calculate $p$-values for all local maxima using random field theory. Assuming unimodal true signals with finite support and non-stationary Gaussian noise that can be repeatedly observed. The algorithm introduced in this work, demonstrates asymptotic strong control of the False Discovery Rate (FDR) and power consistency as the number of sequence repetitions and signal strength increase. Simulations indicate that FDR levels can also be controlled under non-asymptotic conditions with finite repetitions. The application of this algorithm to change point detection also guarantees FDR control and power consistency. The second project focuses on investigating the explicit and asymptotic height densities of critical points of smooth isotropic Gaussian random fields on both Euclidean space and spheres.The formulae are based on characterizing the distribution of the Hessian of the Gaussian field using the Gaussian orthogonally invariant (GOI) matrices and the Gaussian orthogonal ensemble (GOE) matrices, which are special cases of GOI matrices. However, as the dimension increases, calculating explicit formulae becomes computationally challenging. The project includes two simulation methods for these distributions. Additionally, asymptotic distributions are obtained by utilizing the asymptotic distribution of the eigenvalues (excluding the maximum eigenvalues) of the GOE matrix for large dimensions. However, when it comes to the maximum eigenvalue, the Tracy-Widom distribution is utilized. Simulation results demonstrate the close approximation between the asymptotic distribution and the real distribution when $N$ is sufficiently large.
Contributorsgu, shuang (Author) / Cheng, Dan (Thesis advisor) / Lopes, Hedibert (Committee member) / Fricks, John (Committee member) / Lan, Shiwei (Committee member) / Zheng, Yi (Committee member) / Arizona State University (Publisher)
Created2023
Description
This dissertation develops versatile modeling tools to estimate causal effects when conditional unconfoundedness is not immediately satisfied. Chapter 2 provides a brief overview ofcommon techniques in causal inference, with a focus on models relevant to the data explored
in later chapters. The rest of the dissertation focuses on the development of novel “reduced
form” models which are designed to assess the particular challenges of different datasets.
Chapter 3 explores the question of whether or not forecasts of bankruptcy cause bankruptcy.
The question arises from the observation that companies issued going concern opinions were
more likely to go bankrupt in the following year, leading people to speculate that the opinions themselves caused the bankruptcy via a “self-fulfilling prophecy”. A Bayesian machine
learning sensitivity analysis is developed to answer this question. In exchange for additional
flexibility and fewer assumptions, this approach loses point identification of causal effects
and thus a sensitivity analysis is developed to study a wide range of plausible scenarios of
the causal effect of going concern opinions on bankruptcy. Reported in the simulations are
different performance metrics of the model in comparison with other popular methods and a
robust analysis of the sensitivity of the model to mis-specification. Results on empirical data
indicate that forecasts of bankruptcies likely do have a small causal effect.
Chapter 4 studies the effects of vaccination on COVID-19 mortality at the state level in
the United States. The dynamic nature of the pandemic complicates more straightforward
regression adjustments and invalidates many alternative models. The chapter comments on
the limitations of mechanistic approaches as well as traditional statistical methods to epidemiological data. Instead, a state space model is developed that allows the study of the
ever-changing dynamics of the pandemic’s progression. In the first stage, the model decomposes the observed mortality data into component surges, and later uses this information in
a semi-parametric regression model for causal analysis. Results are investigated thoroughly
for empirical justification and stress-tested in simulated settings.
ContributorsPapakostas, Demetrios (Author) / Hahn, Paul (Thesis advisor) / McCulloch, Robert (Committee member) / Zhou, Shuang (Committee member) / Kao, Ming-Hung (Committee member) / Lan, Shiwei (Committee member) / Arizona State University (Publisher)
Created2023