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- All Subjects: Materials Science
- All Subjects: Signal Processing
- Creators: Chan, Candace
Description
Genomic and proteomic sequences, which are in the form of deoxyribonucleic acid (DNA) and amino acids respectively, play a vital role in the structure, function and diversity of every living cell. As a result, various genomic and proteomic sequence processing methods have been proposed from diverse disciplines, including biology, chemistry, physics, computer science and electrical engineering. In particular, signal processing techniques were applied to the problems of sequence querying and alignment, that compare and classify regions of similarity in the sequences based on their composition. However, although current approaches obtain results that can be attributed to key biological properties, they require pre-processing and lack robustness to sequence repetitions. In addition, these approaches do not provide much support for efficiently querying sub-sequences, a process that is essential for tracking localized database matches. In this work, a query-based alignment method for biological sequences that maps sequences to time-domain waveforms before processing the waveforms for alignment in the time-frequency plane is first proposed. The mapping uses waveforms, such as time-domain Gaussian functions, with unique sequence representations in the time-frequency plane. The proposed alignment method employs a robust querying algorithm that utilizes a time-frequency signal expansion whose basis function is matched to the basic waveform in the mapped sequences. The resulting WAVEQuery approach is demonstrated for both DNA and protein sequences using the matching pursuit decomposition as the signal basis expansion. The alignment localization of WAVEQuery is specifically evaluated over repetitive database segments, and operable in real-time without pre-processing. It is demonstrated that WAVEQuery significantly outperforms the biological sequence alignment method BLAST for queries with repetitive segments for DNA sequences. A generalized version of the WAVEQuery approach with the metaplectic transform is also described for protein sequence structure prediction. For protein alignment, it is often necessary to not only compare the one-dimensional (1-D) primary sequence structure but also the secondary and tertiary three-dimensional (3-D) space structures. This is done after considering the conformations in the 3-D space due to the degrees of freedom of these structures. As a result, a novel directionality based 3-D waveform mapping for the 3-D protein structures is also proposed and it is used to compare protein structures using a matched filter approach. By incorporating a 3-D time axis, a highly-localized Gaussian-windowed chirp waveform is defined, and the amino acid information is mapped to the chirp parameters that are then directly used to obtain directionality in the 3-D space. This mapping is unique in that additional characteristic protein information such as hydrophobicity, that relates the sequence with the structure, can be added as another representation parameter. The additional parameter helps tracking similarities over local segments of the structure, this enabling classification of distantly related proteins which have partial structural similarities. This approach is successfully tested for pairwise alignments over full length structures, alignments over multiple structures to form a phylogenetic trees, and also alignments over local segments. Also, basic classification over protein structural classes using directional descriptors for the protein structure is performed.
ContributorsRavichandran, Lakshminarayan (Author) / Papandreou-Suppappola, Antonia (Thesis advisor) / Spanias, Andreas S (Thesis advisor) / Chakrabarti, Chaitali (Committee member) / Tepedelenlioğlu, Cihan (Committee member) / Lacroix, Zoé (Committee member) / Arizona State University (Publisher)
Created2011
Description
Dealloying, the selective dissolution of an elemental component from an alloy, is an important corrosion mechanism and a technological significant means to fabricate nanoporous structures for a variety of applications. In noble metal alloys, dealloying proceeds above a composition dependent critical potential, and bi-continuous structure evolves "simultaneously" as a result of the interplay between percolation dissolution and surface diffusion. In contrast, dealloying in alloys that show considerable solid-state mass transport at ambient temperature is largely unexplored despite its relevance to nanoparticle catalysts and Li-ion anodes. In my dissertation, I discuss the behaviors of two alloy systems in order to elucidate the role of bulk lattice diffusion in dealloying. First, Mg-Cd alloys are chosen to show that when the dealloying is controlled by bulk diffusion, a new type of porosity - negative void dendrites will form, and the process mirrors electrodeposition. Then, Li-Sn alloys are studied with respect to the composition, particle size and dealloying rate effects on the morphology evolution. Under the right condition, dealloying of Li-Sn supported by percolation dissolution results in the same bi-continuous structure as nanoporous noble metals; whereas lattice diffusion through the otherwise "passivated" surface allows for dealloying with no porosity evolution. The interactions between bulk diffusion, surface diffusion and dissolution are revealed by chronopotentiometry and linear sweep voltammetry technics. The better understanding of dealloying from these experiments enables me to construct a brief review summarizing the electrochemistry and morphology aspects of dealloying as well as offering interpretations to new observations such as critical size effect and encased voids in nanoporous gold. At the end of the dissertation, I will describe a preliminary attempt to generalize the morphology evolution "rules of dealloying" to all solid-to-solid interfacial controlled phase transition process, demonstrating that bi-continuous morphologies can evolve regardless of the nature of parent phase.
ContributorsChen, Qing (Author) / Sieradzki, Karl (Thesis advisor) / Friesen, Cody (Committee member) / Buttry, Daniel (Committee member) / Chan, Candace (Committee member) / Arizona State University (Publisher)
Created2013
Description
Composite materials are increasingly being used in aircraft, automobiles, and other applications due to their high strength to weight and stiffness to weight ratios. However, the presence of damage, such as delamination or matrix cracks, can significantly compromise the performance of these materials and result in premature failure. Structural components are often manually inspected to detect the presence of damage. This technique, known as schedule based maintenance, however, is expensive, time-consuming, and often limited to easily accessible structural elements. Therefore, there is an increased demand for robust and efficient Structural Health Monitoring (SHM) techniques that can be used for Condition Based Monitoring, which is the method in which structural components are inspected based upon damage metrics as opposed to flight hours. SHM relies on in situ frameworks for detecting early signs of damage in exposed and unexposed structural elements, offering not only reduced number of schedule based inspections, but also providing better useful life estimates. SHM frameworks require the development of different sensing technologies, algorithms, and procedures to detect, localize, quantify, characterize, as well as assess overall damage in aerospace structures so that strong estimations in the remaining useful life can be determined. The use of piezoelectric transducers along with guided Lamb waves is a method that has received considerable attention due to the weight, cost, and function of the systems based on these elements. The research in this thesis investigates the ability of Lamb waves to detect damage in feature dense anisotropic composite panels. Most current research negates the effects of experimental variability by performing tests on structurally simple isotropic plates that are used as a baseline and damaged specimen. However, in actual applications, variability cannot be negated, and therefore there is a need to research the effects of complex sample geometries, environmental operating conditions, and the effects of variability in material properties. This research is based on experiments conducted on a single blade-stiffened anisotropic composite panel that localizes delamination damage caused by impact. The overall goal was to utilize a correlative approach that used only the damage feature produced by the delamination as the damage index. This approach was adopted because it offered a simplistic way to determine the existence and location of damage without having to conduct a more complex wave propagation analysis or having to take into account the geometric complexities of the test specimen. Results showed that even in a complex structure, if the damage feature can be extracted and measured, then an appropriate damage index can be associated to it and the location of the damage can be inferred using a dense sensor array. The second experiment presented in this research studies the effects of temperature on damage detection when using one test specimen for a benchmark data set and another for damage data collection. This expands the previous experiment into exploring not only the effects of variable temperature, but also the effects of high experimental variability. Results from this work show that the damage feature in the data is not only extractable at higher temperatures, but that the data from one panel at one temperature can be directly compared to another panel at another temperature for baseline comparison due to linearity of the collected data.
ContributorsVizzini, Anthony James, II (Author) / Chattopadhyay, Aditi (Thesis advisor) / Fard, Masoud (Committee member) / Papandreou-Suppappola, Antonia (Committee member) / Arizona State University (Publisher)
Created2012
Description
Non-Destructive Testing (NDT) is integral to preserving the structural health of materials. Techniques that fall under the NDT category are able to evaluate integrity and condition of a material without permanently altering any property of the material. Additionally, they can typically be used while the material is in active use instead of needing downtime for inspection.
The two general categories of structural health monitoring (SHM) systems include passive and active monitoring. Active SHM systems utilize an input of energy to monitor the health of a structure (such as sound waves in ultrasonics), while passive systems do not. As such, passive SHM tends to be more desirable. A system could be permanently fixed to a critical location, passively accepting signals until it records a damage event, then localize and characterize the damage. This is the goal of acoustic emissions testing.
When certain types of damage occur, such as matrix cracking or delamination in composites, the corresponding release of energy creates sound waves, or acoustic emissions, that propagate through the material. Audio sensors fixed to the surface can pick up data from both the time and frequency domains of the wave. With proper data analysis, a time of arrival (TOA) can be calculated for each sensor allowing for localization of the damage event. The frequency data can be used to characterize the damage.
In traditional acoustic emissions testing, the TOA combined with wave velocity and information about signal attenuation in the material is used to localize events. However, in instances of complex geometries or anisotropic materials (such as carbon fibre composites), velocity and attenuation can vary wildly based on the direction of interest. In these cases, localization can be based off of the time of arrival distances for each sensor pair. This technique is called Delta T mapping, and is the main focus of this study.
The two general categories of structural health monitoring (SHM) systems include passive and active monitoring. Active SHM systems utilize an input of energy to monitor the health of a structure (such as sound waves in ultrasonics), while passive systems do not. As such, passive SHM tends to be more desirable. A system could be permanently fixed to a critical location, passively accepting signals until it records a damage event, then localize and characterize the damage. This is the goal of acoustic emissions testing.
When certain types of damage occur, such as matrix cracking or delamination in composites, the corresponding release of energy creates sound waves, or acoustic emissions, that propagate through the material. Audio sensors fixed to the surface can pick up data from both the time and frequency domains of the wave. With proper data analysis, a time of arrival (TOA) can be calculated for each sensor allowing for localization of the damage event. The frequency data can be used to characterize the damage.
In traditional acoustic emissions testing, the TOA combined with wave velocity and information about signal attenuation in the material is used to localize events. However, in instances of complex geometries or anisotropic materials (such as carbon fibre composites), velocity and attenuation can vary wildly based on the direction of interest. In these cases, localization can be based off of the time of arrival distances for each sensor pair. This technique is called Delta T mapping, and is the main focus of this study.
ContributorsBriggs, Nathaniel (Author) / Chattopadhyay, Aditi (Thesis director) / Papandreou-Suppappola, Antonia (Committee member) / Skinner, Travis (Committee member) / Mechanical and Aerospace Engineering Program (Contributor) / School of Mathematical and Statistical Sciences (Contributor) / Barrett, The Honors College (Contributor)
Created2019-05
Description
In the field of electronic music, haptic feedback is a crucial feature of digital musical instruments (DMIs) because it gives the musician a more immersive experience. This feedback might come in the form of a wearable haptic device that vibrates in response to music. Such advancements in the electronic music field are applicable to the field of speech and hearing. More specifically, wearable haptic feedback devices can enhance the musical listening experience for people who use cochlear implant (CI) devices.
This Honors Thesis is a continuation of Prof. Lauren Hayes’s and Dr. Xin Luo’s research initiative, Haptic Electronic Audio Research into Musical Experience (HEAR-ME), which investigates how to enhance the musical listening experience for CI users using a wearable haptic system. The goals of this Honors Thesis are to adapt Prof. Hayes’s system code from the Max visual programming language into the C++ object-oriented programming language and to study the results of the developed C++ codes. This adaptation allows the system to operate in real-time and independently of a computer.
Towards these goals, two signal processing algorithms were developed and programmed in C++. The first algorithm is a thresholding method, which outputs a pulse of a predefined width when the input signal falls below some threshold in amplitude. The second algorithm is a root-mean-square (RMS) method, which outputs a pulse-width modulation signal with a fixed period and with a duty cycle dependent on the RMS of the input signal. The thresholding method was found to work best with speech, and the RMS method was found to work best with music. Future work entails the design of adaptive signal processing algorithms to allow the system to work more effectively on speech in a noisy environment and to emphasize a variety of elements in music.
This Honors Thesis is a continuation of Prof. Lauren Hayes’s and Dr. Xin Luo’s research initiative, Haptic Electronic Audio Research into Musical Experience (HEAR-ME), which investigates how to enhance the musical listening experience for CI users using a wearable haptic system. The goals of this Honors Thesis are to adapt Prof. Hayes’s system code from the Max visual programming language into the C++ object-oriented programming language and to study the results of the developed C++ codes. This adaptation allows the system to operate in real-time and independently of a computer.
Towards these goals, two signal processing algorithms were developed and programmed in C++. The first algorithm is a thresholding method, which outputs a pulse of a predefined width when the input signal falls below some threshold in amplitude. The second algorithm is a root-mean-square (RMS) method, which outputs a pulse-width modulation signal with a fixed period and with a duty cycle dependent on the RMS of the input signal. The thresholding method was found to work best with speech, and the RMS method was found to work best with music. Future work entails the design of adaptive signal processing algorithms to allow the system to work more effectively on speech in a noisy environment and to emphasize a variety of elements in music.
ContributorsBonelli, Dominic Berlage (Author) / Papandreou-Suppappola, Antonia (Thesis director) / Hayes, Lauren (Thesis director, Committee member) / Electrical Engineering Program (Contributor) / Barrett, The Honors College (Contributor)
Created2019-12
Description
Solid-state lithium-ion batteries are a major area of research due to their increased safety characteristics over conventional liquid electrolyte batteries. Lithium lanthanum zirconate (LLZO) is a promising garnet-type ceramic for use as a solid-state electrolyte due to its high ionic conductivity. The material exists in two dierent phases, one that is cubic in structure and one that is tetragonal. One potential synthesis method that results in LLZO in the more useful, cubic phase, is electrospinning, where a mat of nanowires is spun and then calcined into LLZO. A phase containing lanthanum zirconate (LZO) and amorphous lithium occursas an intermediate during the calcination process. LZO has been shown to be a sintering aid for LLZO, allowing for lower sintering temperatures. Here it is shown the eects of internal LZO on the sintered pellets. This is done by varying the 700C calcination time to transform diering amounts of LZO and LLZO in electrospun nanowires, and then using the same sintering parameters for each sample. X-ray diraction was used to get structural and compositional analysis of both the calcined powders and sintered pellets. Pellets formed from wires calcined at 1 hour or longer contained only LLZO even if the calcined powder had only undergone the rst phase transformation. The relative density of the pellet with no initial LLZO of 61.0% was higher than that of the pellet with no LZO, which had a relative density of 57.7%. This allows for the same, or slightly higher, quality material to be synthesized with a shorter amount of processing time.
ContributorsLondon, Nathan Harry (Author) / Chan, Candace (Thesis director) / Tongay, Sefaattin (Committee member) / Department of Physics (Contributor) / Materials Science and Engineering Program (Contributor) / Barrett, The Honors College (Contributor)
Created2017-05
Description
Topological insulators with conducting surface states yet insulating bulk states have generated a lot of interest amongst the physics community due to their varied characteristics and possible applications. Doped topological insulators have presented newer physical states of matter where topological order co&ndashexists; with other physical properties (like magnetic order). The electronic states of these materials are very intriguing and pose problems and the possible solutions to understanding their unique behaviors. In this work, we use Electron Energy Loss Spectroscopy (EELS) – an analytical TEM tool to study both core&ndashlevel; and valence&ndashlevel; excitations in Bi2Se3 and Cu(doped)Bi2Se3 topological insulators. We use this technique to retrieve information on the valence, bonding nature, co-ordination and lattice site occupancy of the undoped and the doped systems. Using the reference materials Cu(I)Se and Cu(II)Se we try to compare and understand the nature of doping that copper assumes in the lattice. And lastly we utilize the state of the art monochromated Nion UltraSTEM 100 to study electronic/vibrational excitations at a record energy resolution from sub-nm regions in the sample.
ContributorsSubramanian, Ganesh (Author) / Spence, John (Thesis advisor) / Jiang, Nan (Committee member) / Chen, Tingyong (Committee member) / Chan, Candace (Committee member) / Arizona State University (Publisher)
Created2013
Description
The continuous time-tagging of photon arrival times for high count rate sources isnecessary for applications such as optical communications, quantum key encryption,
and astronomical measurements. Detection of Hanbury-Brown and Twiss (HBT) single
photon correlations from thermal sources, such as stars, requires a combination of high
dynamic range, long integration times, and low systematics in the photon detection
and time tagging system. The continuous nature of the measurements and the need
for highly accurate timing resolution requires a customized time-to-digital converter
(TDC). A custom built, two-channel, field programmable gate array (FPGA)-based
TDC capable of continuously time tagging single photons with sub clock cycle timing
resolution was characterized. Auto-correlation and cross-correlation measurements
were used to constrain spurious systematic effects in the pulse count data as a function
of system variables. These variables included, but were not limited to, incident
photon count rate, incoming signal attenuation, and measurements of fixed signals.
Additionally, a generalized likelihood ratio test using maximum likelihood estimators
(MLEs) was derived as a means to detect and estimate correlated photon signal
parameters. The derived GLRT was capable of detecting correlated photon signals in
a laboratory setting with a high degree of statistical confidence. A proof is presented
in which the MLE for the amplitude of the correlated photon signal is shown to be the
minimum variance unbiased estimator (MVUE). The fully characterized TDC was used
in preliminary measurements of astronomical sources using ground based telescopes.
Finally, preliminary theoretical groundwork is established for the deep space optical
communications system of the proposed Breakthrough Starshot project, in which
low-mass craft will travel to the Alpha Centauri system to collect scientific data from
Proxima B. This theoretical groundwork utilizes recent and upcoming space based
optical communication systems as starting points for the Starshot communication
system.
ContributorsHodges, Todd Michael William (Author) / Mauskopf, Philip (Thesis advisor) / Trichopoulos, George (Thesis advisor) / Papandreou-Suppappola, Antonia (Committee member) / Bliss, Daniel (Committee member) / Arizona State University (Publisher)
Created2022
Description
Recent advancements in the field of light wavefront engineering rely on complex 3D metasurfaces composed of sub-wavelength structures which, for the near infrared range, are challenging to manufacture using contemporary scalable micro- and nanomachining solutions. To address this demand, a novel parallel micromachining method, called metal-assisted electrochemical nanoimprinting (Mac-Imprint) was developed. Mac-Imprint relies on the catalysis of silicon wet etching by a gold-coated stamp enabled by mass-transport of the reactants to achieve high pattern transfer fidelity. This was realized by (i) using nanoporous catalysts to promote etching solution diffusion and (ii) semiconductor substrate pre-patterning with millimeter-scale pillars to provide etching solution storage. However, both of these approaches obstruct scaling of the process in terms of (i) surface roughness and resolution, and (ii) areal footprint of the fabricated structures. To address the first limitation, this dissertation explores fundamental mechanisms underlying the resolution limit of Mac-Imprint and correlates it to the Debye length (~0.9 nm). By synthesizing nanoporous catalytic stamps with pore size less than 10 nm, the sidewall roughness of Mac-Imprinted patterns is reduced to levels comparable to plasma-based micromachining. This improvement allows for the implementation of Mac-Imprint to fabricate Si rib waveguides with limited levels of light scattering on its sidewall. To address the second limitation, this dissertation focuses on the management of the etching solution storage by developing engineered stamps composed of highly porous polymers coated in gold. In a plate-to-plate configuration, such stamps allow for the uniform patterning of chip-scale Si substrates with hierarchical 3D antireflective and antifouling patterns. The development of a Mac-Imprint system capable of conformal patterning onto non-flat substrates becomes possible due to the flexible and stretchable nature of gold-coated porous polymer stamps. Understanding of their mechanical behavior during conformal contact allows for the first implementation of Mac-Imprint to directly micromachine 3D hierarchical patterns onto plano-convex Si lenses, paving the way towards scalable fabrication of multifunctional 3D metasurfaces for applications in advanced optics.
ContributorsSharstniou, Aliaksandr (Author) / Azeredo, Bruno (Thesis advisor) / Chan, Candace (Committee member) / Rykaczewski, Konrad (Committee member) / Petuskey, William (Committee member) / Chen, Xiangfan (Committee member) / Arizona State University (Publisher)
Created2022
Description
The propagation of waves in solids, especially when characterized by dispersion, remains a topic of profound interest in the field of signal processing. Dispersion represents a phenomenon where wave speed becomes a function of frequency and results in multiple oscillatory modes. Such signals find application in structural healthmonitoring for identifying potential damage sensitive features in complex materials.
Consequently, it becomes important to find matched time-frequency representations
for characterizing the properties of the multiple frequency-dependent modes of propagation in dispersive material. Various time-frequency representations have been
used for dispersive signal analysis. However, some of them suffered from poor timefrequency localization or were designed to match only specific dispersion modes with
known characteristics, or could not reconstruct individual dispersive modes. This
thesis proposes a new time-frequency representation, the nonlinear synchrosqueezing
transform (NSST) that is designed to offer high localization to signals with nonlinear time-frequency group delay signatures. The NSST follows the technique used
by reassignment and synchrosqueezing methods to reassign time-frequency points of
the short-time Fourier transform and wavelet transform to specific localized regions
in the time-frequency plane. As the NSST is designed to match signals with third
order polynomial phase functions in the frequency domain, we derive matched group
delay estimators for the time-frequency point reassignment. This leads to a highly localized representation for nonlinear time-frequency characteristics that also allow for
the reconstruction of individual dispersive modes from multicomponent signals. For
the reconstruction process, we propose a novel unsupervised learning approach that
does not require prior information on the variation or number of modes in the signal.
We also propose a Bayesian group delay mode merging approach for reconstructing
modes that overlap in time and frequency. In addition to using simulated signals, we demonstrate the performance of the new NSST, together with mode extraction, using
real experimental data of ultrasonic guided waves propagating through a composite
plate.
ContributorsIkram, Javaid (Author) / Papandreou-Suppappola, Antonia (Thesis advisor) / Chattopadhyay, Aditi (Thesis advisor) / Bertoni, Mariana (Committee member) / Sinha, Kanu (Committee member) / Arizona State University (Publisher)
Created2023