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The use of genetic management in conservation has sparked much debate around the ethical and environmental impacts of the plans. A case study on the conservation of leopard frogs in Arizona was analyzed to better understand the benefits and issues surrounding genetic management plans. The first part of the case

The use of genetic management in conservation has sparked much debate around the ethical and environmental impacts of the plans. A case study on the conservation of leopard frogs in Arizona was analyzed to better understand the benefits and issues surrounding genetic management plans. The first part of the case focuses on the recent management plan for Chiricahua Leopard Frogs implemented by the Arizona Game and Fish Department. The goal of the plan is to better understand the genetic dynamics of the established Chiricahua Leopard Frog populations to develop a more effective management plan. The second part of the case focuses on the Arizona Game and Fish Department’s management of the Northern Leopard Frog. There was little success with the initial breed and release program of the native species, however a nonnative subspecies of Northern Leopard Frog was able to establish a thriving population. This case study exemplifies the many complications with genetic management plans and the importance of careful assessment of options when deciding on a genetic management plan. Despite the complexity of genetic management plans, it is an important method to consider when discussing the conservation of a species.
ContributorsTurpen, Alexa (Author) / Murphree, Julie (Thesis director) / Collins, James (Thesis director) / Owens, Audrey (Committee member) / Barrett, The Honors College (Contributor) / School of Life Sciences (Contributor) / College of Integrative Sciences and Arts (Contributor) / School of Mathematical and Natural Sciences (Contributor)
Created2024-05
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Beginning in 2011, the Gulf of Mexico and all of the surrounding coastlines saw a rapid influx of pelagic Sargassum seaweed. The issue continues to worsen, and as larger amounts of Sargassum continue to wash ashore the affected regions are becoming threatened on multiple fronts. These previously unseen quantities of

Beginning in 2011, the Gulf of Mexico and all of the surrounding coastlines saw a rapid influx of pelagic Sargassum seaweed. The issue continues to worsen, and as larger amounts of Sargassum continue to wash ashore the affected regions are becoming threatened on multiple fronts. These previously unseen quantities of Sargassum seaweed are creating a host of serious environmental, economic, and health concerns. Affected areas are desperately searching for solutions to help remove the seaweed while wondering if these Sargassum covered beaches will become the new norm. While currently these concerns are centralized in coastal regions of the Gulf of Mexico, there is no evidence that the issue will not proliferate leading to wide-scale global problems. This paper investigates the various concerns created by the inundation of the Sargassum seaweed, researches the unique characteristics of the thriving species of Sargassum in hopes of identifying a solution, and explores the potential market value these solutions may have in an attempt to mitigate the large-scale impact of the Sargassum invasion.
ContributorsVan Bussum, Ryan William (Author) / Leah, Gerber (Thesis director) / Ann, Kinzig (Committee member) / School of Life Sciences (Contributor) / Barrett, The Honors College (Contributor)
Created2019-05
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Nitrogen (N) and phosphorus (P) are important limiting or co-limiting nutrients in many aquatic ecosystems. Consumers such as fishes can significantly impact the balance and redistribution of these nutrients through consumer-driven nutrient recycling. Intraspecific variation in nutrient excretion rates can therefore have significant ecosystem impacts. Among individuals of sexually dimorphic

Nitrogen (N) and phosphorus (P) are important limiting or co-limiting nutrients in many aquatic ecosystems. Consumers such as fishes can significantly impact the balance and redistribution of these nutrients through consumer-driven nutrient recycling. Intraspecific variation in nutrient excretion rates can therefore have significant ecosystem impacts. Among individuals of sexually dimorphic consumers, variation in population size structure and sex ratio could potentially have impacts of similar magnitude. We tested for the effects of body size and sex on consumer-driven nutrient recycling by measuring N and P excretion rates from eight species of poeciliid fishes. We found a strong positive effect of size on N excretion rates, as has been previously described among species. However, we found no effect of size on P excretion rates, nor did we find any difference in N or P excretion rates between sexes. Our work provides a preliminary analysis of how sexual dimorphism can lead to disparate nutrient excretion rates within consumer populations. These results indicate that variation in population sex ratios of sexually dimorphic consumers could have impacts at the ecosystem scale.
ContributorsAmbus, Nicholas George (Author) / Jon, Harrison (Thesis director) / Eric, Moody (Committee member) / Jordan, Okie (Committee member) / Dean, W.P. Carey School of Business (Contributor) / School of Life Sciences (Contributor) / Barrett, The Honors College (Contributor)
Created2019-05
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The amphibian pathogen Ambystoma Tigrinum Virus (ATV) has been an important topic of study within the amphibian community since its discovery. ATV threatens many salamander populations across the US, including those in east-central and southeast Arizona. These populations remain at risk since there are no treatments available. In this thesis,

The amphibian pathogen Ambystoma Tigrinum Virus (ATV) has been an important topic of study within the amphibian community since its discovery. ATV threatens many salamander populations across the US, including those in east-central and southeast Arizona. These populations remain at risk since there are no treatments available. In this thesis, a novel method of inactivation is tested to produce a vaccine with the aim of safely eliciting an immune response within the salamander host. This novel form of inactivation has been tested on several human pathogens but has yet to be used on amphibian pathogens. It has the potential to revolutionize our traditional approach to inactivating viruses. After laser treatment, viral plaque assays suggested that inactivated ATV ceased to grow completely, pointing to the possibility of creating a vaccine. Animal challenge trials were conducted with 60 juvenile Ambystoma tigrinum, but surprisingly there was no protective effect from viral inactivation. Further study is needed to clarify why in vitro and in vivo tests of viral inactivation produced contradictory results.
ContributorsVazquez, Luis Ernesto (Author) / Collins, James (Thesis director) / Tsen, Kong-Thon (Committee member) / School of Life Sciences (Contributor) / Barrett, The Honors College (Contributor)
Created2019-05
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I am evaluating the genomic basis of a model of heat tolerance in which organisms succumb to warming when their demand for oxygen exceeds their supply. This model predicts that tolerance of hypoxia should correlate genetically with tolerance of heat. To evaluate this prediction, I tested heat and hypoxia tolerance

I am evaluating the genomic basis of a model of heat tolerance in which organisms succumb to warming when their demand for oxygen exceeds their supply. This model predicts that tolerance of hypoxia should correlate genetically with tolerance of heat. To evaluate this prediction, I tested heat and hypoxia tolerance in several genetic lines of Drosophila melanogaster. I hypothesized that genotypes that can fly better at high temperatures are also able to fly well at hypoxia. Genotypes from the Drosophila Genetic Reference Panel (DGRP) were assessed for flight at hypoxia and normal temperature (12% O2 and 25°C) as well as normoxia and high temperature (21% O2 and 39°C). After testing 66 lines from the DGRP, the oxygen- and capacity-limited thermal tolerance theory is supported; hypoxia-resistant lines are more likely to be heat-resistant. This supports previous research, which suggested an interaction between the tolerance of the two environmental variables. I used this data to perform a genome-wide association study to find specific single-nucleotide polymorphisms associated with heat tolerance and hypoxia tolerance but found no specific genomic markers. Understanding factors that limit an organism’s stress tolerance as well as the regions of the genome that dictate this phenotype should enable us to predict how organisms may respond to the growing threat of climate change.
ContributorsFredette-Roman, Jacob Daniel (Author) / Angilletta, Michael (Thesis director) / VandenBrooks, John (Committee member) / Youngblood, Jacob (Committee member) / School of Life Sciences (Contributor, Contributor) / Barrett, The Honors College (Contributor)
Created2020-05
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Yellow-bellied marmots (Marmota flavivent) are semi-fossorial ground-dwelling sciurid rodents native to the western United States. They are facultatively social and live in colonies that may contain over 50 individuals. Marmot populations are well studied in terms of their diet, life cycle, distribution, and behavior, however, knowledge about viruses associated with

Yellow-bellied marmots (Marmota flavivent) are semi-fossorial ground-dwelling sciurid rodents native to the western United States. They are facultatively social and live in colonies that may contain over 50 individuals. Marmot populations are well studied in terms of their diet, life cycle, distribution, and behavior, however, knowledge about viruses associated with marmots is very limited. In this study we aim to identify DNA viruses by non-invasive sampling of their feces. Viral DNA was extracted from fecal material of 35 individual marmots collected in Colorado and subsequently submitted to rolling circle amplification for circular molecule enrichment. Using a viral metagenomics approach which included high-throughput sequencing and verification of viral genomes using PCR, cloning and sequencing, a diverse group of single-stranded (ss) DNA viruses were identified. Diverse ssDNA viruses were identified that belong to two established families, Genomoviridae (n=7) and Anelloviridae (n=1) and several others that belong to unclassified circular replication associated encoding single-stranded (CRESS) DNA virus groups (n=19). There were also circular DNA molecules extracted (n=4) that appear to encode one viral-like gene and are composed of <1545 nt. The viruses that belonged to the family Genomoviridae clustered with those in the Gemycircularvirus genus. The genomoviruses were extracted from 6 samples. These clustered with gemycircularvirus extracted from arachnids and feces. The anellovirus, extracted from one sample, identified here has a genome sequence that is most similar to those from other rodent species, lagomorphs, and mosquitos. The CRESS viruses identified here were extracted from 9 samples and are novel and cluster with others identified from avian species. This study gives a snapshot of viruses associated with marmots based on fecal sampling.
ContributorsKhalifeh, Anthony (Author) / Varsani, Arvind (Thesis director) / Kraberger, Simona (Committee member) / Dolby, Greer (Committee member) / School of Life Sciences (Contributor) / Barrett, The Honors College (Contributor)
Created2020-05
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Description

This study examined crayfish diet within varying hydrologic environment in lotic systems using stable isotope analysis of crayfish and basal resources to add depth to previous findings. Crayfish are numerous and are omnivorous, opportunistic feeders, feeding on invertebrates, vegetation and detritus. Arizona streams stand apart from the Eastern and Northwestern

This study examined crayfish diet within varying hydrologic environment in lotic systems using stable isotope analysis of crayfish and basal resources to add depth to previous findings. Crayfish are numerous and are omnivorous, opportunistic feeders, feeding on invertebrates, vegetation and detritus. Arizona streams stand apart from the Eastern and Northwestern aquatic ecosystems of the United States because Arizona has no native crayfish species. Two species have been introduced and become widely established in Arizona (Orconectes virilis and Procambarus clarkii), with concern for further introduction of crayfish species and more information on how these two species impact the native species in the streams is needed. Previous studies have focused on crayfish abundance with hydrologic variation and crayfish diets within a lentic system, but few have focused on how the diet of consumers varies with hydrologic variability. Crayfish are hardy and have a dramatically increasing population within Arizona and therefore inhabit systems with a wide range of hydrologic variability which may contribute to spatial variability. The results show that crayfish diets do show a significant level of seasonal variation in some study locations, in both C source and trophic level. Hydrologic variation was also shown to impact crayfish diet at several study sites, with increasing magnitude of event (both floods and droughts) correlating with a change toward more aquatic C sources and lower trophic position in several of the study sites. In some locations, the correlation was not as strong with variation and diet change and showed less change in C source and rather showed an increase in trophic position.

ContributorsThompson, Sara Nicole (Author) / Sabo, John L. (Thesis director) / Grimm, Nancy (Committee member) / Baruch, Ethan M. (Committee member) / School of Geographical Sciences and Urban Planning (Contributor) / Dean, W.P. Carey School of Business (Contributor) / School of Life Sciences (Contributor) / Barrett, The Honors College (Contributor)
Created2019-05
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Description
Human activity produces ambient noise that potentially alters species’ abilities to communicate with each other—among other impacts. Given that birds are known to be sensitive to structural changes in habitat and highly communicative through sound, it is beneficial to understand how changing acoustic ecologies and ambient noise impact birds’

Human activity produces ambient noise that potentially alters species’ abilities to communicate with each other—among other impacts. Given that birds are known to be sensitive to structural changes in habitat and highly communicative through sound, it is beneficial to understand how changing acoustic ecologies and ambient noise impact birds’ ability to communicate in their respective environments. In this study, mockingbird calls from an urban, desert, and intermediate study site were recorded and analyzed for differences in acoustic properties. Acoustic properties such as frequency and amplitude differed significantly across sites as it was determined that mockingbirds in urban areas increase both the peak frequency and amplitude of their calls in order to communicate. This study identifies what these changes in acoustic properties mean in relation to the survival and conservation of birds and concludes with recommendations for novel research.
ContributorsReynolds, Bailey Susana (Author) / Pearson, David (Thesis director) / Walters, Molina (Committee member) / School of Sustainability (Contributor) / School of Life Sciences (Contributor) / Dean, W.P. Carey School of Business (Contributor) / Barrett, The Honors College (Contributor)
Created2019-05
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Description
Constructed treatment wetlands (CTW) are being increasingly utilized in urbanized areas as a cost-effective and environmentally-friendly method for treating wastewater. CTWs can be especially useful for urban areas in aridland environments because they facilitate the reuse of water during water shortages. In my study, I determined the rates

Constructed treatment wetlands (CTW) are being increasingly utilized in urbanized areas as a cost-effective and environmentally-friendly method for treating wastewater. CTWs can be especially useful for urban areas in aridland environments because they facilitate the reuse of water during water shortages. In my study, I determined the rates at which the aboveground and belowground emergent macrophytes sequestered nitrogen in a 42 ha aridland CTW in Phoenix, Arizona, USA. To do so, I measured foliar nitrogen content in aboveground and belowground biomass of three plant species groups (Typha latifolia + Typha domingensis, Schoenoplectus acutus + Schoenoplectus tabernaemontani, and Schoenoplectus californicus). Using these data, I calculated aboveground and belowground nitrogen budgets for the three species groups annually from 2011 to 2018.

Aboveground nitrogen content showed a maximum in 2011, decreasing until 2015, increasing again until 2017, and dropping in 2018; belowground nitrogen content showed the opposite temporal trend. Because foliar nitrogen content was assumed to be relatively constant over time, my data suggested that belowground nitrogen content increased between 2011 and 2015 and decreased between 2015 and 2017. Aboveground nitrogen content underwent fluctuations due to fluctuations in aboveground biomass. This occurred due to ‘thatching’, or events of widespread toppling of large macrophyte stands. The ratio of aboveground to belowground biomass can vary widely in the same CTW. My findings suggested that managing senesced aboveground plant material in CTWs may optimize the CTW’s ability to sequester nitrogen. Further research is needed to determine the best management strategies, as well as its possible implications.
ContributorsCrane, Austin Matthew (Author) / Childers, Daniel (Thesis director) / Sanchez, Christopher (Committee member) / School of Life Sciences (Contributor) / School of Sustainability (Contributor) / Barrett, The Honors College (Contributor)
Created2019-05
Description
The desert ant, Novomessor albisetosus, is an ideal model system for studying collective transport in ants and self-organized cooperation in natural systems. Small teams collect and stabilize around objects encountered by these colonies in the field, and the teams carry them in straight paths at a regulated velocity back to

The desert ant, Novomessor albisetosus, is an ideal model system for studying collective transport in ants and self-organized cooperation in natural systems. Small teams collect and stabilize around objects encountered by these colonies in the field, and the teams carry them in straight paths at a regulated velocity back to nearby nest entrances. The puzzling finding that teams are slower than individuals contrasts other cases of cooperative transport in ants. The statistical distribution of speeds has been found to be consistent with the slowest-ant model, but the key assumption that individual ants consistently vary in speed has not been tested. To test this, information is needed about the natural distribution of individual ant speeds in colonies and whether some ants are intrinsically slow or fast. To investigate the natural, individual-level variation in ants carrying loads, data were collected on single workers carrying fig seeds in arenas separated from other workers. Using three separate, small arenas, the instantaneous speed of each seed-laden worker was recorded when she picked up a fig seed and transported within the arena. Instantaneous speeds were measured by dividing the distance traveled in each frame by how much time had passed.
There were nine ants who transported a fig seed numerous times and there was a clear variation in their average instantaneous speed. Within an ant, slightly varying speeds were found as well, but within-ant speeds were not as varied as speed across ants. These results support the conclusion that there is intrinsic variation in the speed of an individual which supports the slowest-ant model, but this may require further experimentation to test thoroughly. This information aids in the understanding of the natural variation of ants cooperatively carrying larger loads in groups.
ContributorsCastro, Samantha (Author) / Pavlic, Theodore (Thesis director) / Pratt, Stephen (Committee member) / School of Life Sciences (Contributor) / Barrett, The Honors College (Contributor)
Created2020-12