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Sexually transmitted diseases like gonorrhea and chlamydia, standardly treated with antibiotics, produce over 1.2 million cases annually in the emergency department (Jenkins et al., 2013). To determine a need for antibiotics, hospital labs utilize bacterial cultures to isolate and identify possible pathogens. Unfortunately, this technique can take up to 72 hours, leading to several physicians presumptively treating patients based solely on history and physical presentation. With vague standards for diagnosis and a high percentage of asymptomatic carriers, several patients undergo two scenarios; over- or under-treatment. These two scenarios can lead to consequences like unnecessary exposure to antibiotics and development of secondary conditions (for example: pelvic inflammatory disease, infertility, etc.). This presents a need for a laboratory technique that can provide reliable results in an efficient matter. The viability of DNA-based chip targeted for C. trachomatis, N. gonorrhoeae, and other pathogens of interest were evaluated. The DNA-based chip presented several advantages as it can be easily integrated as a routine test given the process is already well-known, is customizable and able to target multiple pathogens within a single test and has the potential to return results within a few hours as opposed to days. As such, implementation of a DNA-based chip as a diagnostic tool is a timely and potentially impactful investigation.
ContributorsCharoenmins, Patherica (Author) / Penton, Christopher (Thesis director) / Moore, Marianne (Committee member) / College of Integrative Sciences and Arts (Contributor) / Barrett, The Honors College (Contributor)
Created2016-12
Description
Desert organisms lead harsh lives owing to the extreme, often unpredictable environmental conditions they endure. Climate change will likely make their existence even harsher. Predicting the ecological consequences of future climate scenarios thus requires understanding how the biota will be affected by climatic shifts. Biological soil crusts (biocrusts) are an important ecosystem component in arid lands, one that covers large portions of the landscape, improving soil stability and fertility. Because cyanobacteria are biocrust’s preeminent primary producers, eking out an existence during short pulses of precipitation, they represent a relevant global change object of study. I assessed how climate scenarios predicted for the Southwestern United States (US) will affect biocrusts using long-term, rainfall-modifying experimental set-ups that imposed either more intense drought, a seasonally delayed monsoon season, or a shift to smaller but more frequent precipitation events. I expected drought to be detrimental, but not a delay in the monsoon season. Surprisingly, both treatments showed similar effects on cyanobacterial community composition and population size after four years. While successionally incipient biocrusts were unaffected, mature biocrusts lost biomass and diversity with treatment, especially among nitrogen-fixing cyanobacteria. In separate experiments, I assessed the effect of rainfall with modified event size and frequency after a decade of treatment. Small, frequent rainfall events surprisingly enhanced the diversity and biomass of bacteria and cyanobacteria, with clear winners and losers: nitrogen-fixing Scytonema sp. benefited, while Microcoleus vaginatus lost its dominance. As an additional finding, I could also show that water addition is not always beneficial to biocrusts, calling into question the notion that these are strictly water-limited systems.
Finally, results interpretation was severely hampered by a lack of appropriate systematic treatment for an important group of biocrust cyanobacteria, the “Microcoleus steenstrupii complex”. I characterized the complex using a polyphasic approach, leading to the formal description of a new family (Porphyrosiphonaceae) of desiccation resistant cyanobacteria that includes 11 genera, of which 5 had to be newly described. Under the new framework, the distribution and abundance of biocrust cyanobacteria with respect to environmental conditions can now be understood. This body of work contributes significantly to explain current distributional patterns of biocrust cyanobacteria and to predict their fate in the face of climate change.
Finally, results interpretation was severely hampered by a lack of appropriate systematic treatment for an important group of biocrust cyanobacteria, the “Microcoleus steenstrupii complex”. I characterized the complex using a polyphasic approach, leading to the formal description of a new family (Porphyrosiphonaceae) of desiccation resistant cyanobacteria that includes 11 genera, of which 5 had to be newly described. Under the new framework, the distribution and abundance of biocrust cyanobacteria with respect to environmental conditions can now be understood. This body of work contributes significantly to explain current distributional patterns of biocrust cyanobacteria and to predict their fate in the face of climate change.
ContributorsMoreira Camara Fernandes, Vanessa (Author) / Garcia-Pichel, Ferran (Thesis advisor) / Rudgers, Jennifer (Committee member) / Sala, Osvaldo (Committee member) / Penton, Christopher (Committee member) / Arizona State University (Publisher)
Created2020
Description
As white-nose syndrome (WNS) spreads across North America, generating baseline data on bats hibernating outside of the affected area is critical. To illustrate, despite the imminent arrival of Pseudogymnoascus destructans (Pd) to Arizona (AZ), little is known about bat hibernation in the Southwest. With the current amount of information, if Pd spreads throughout the state, detection of cases would be limited, and severity of disease and magnitude of mortality impossible to accurately estimate. Thus, my study monitored hibernating bats in AZ to increase knowledge and investigate potential WNS impacts on these populations. Utilizing passive acoustic monitoring, internal cave surveys, environmental monitoring, and thermal imaging, my study quantified microclimate preferences, hibernation lengths, hibernation behaviors, population dynamics, and species compositions of bats hibernating in three north-central AZ caves. Hibernation lasted between 104 and 162 days, from late October through mid- March, during which time bats (primarily Corynorhinus townsendii and Myotis species) roosted at locations with an average of 4.7oC (range = -0.2oC – 12.1oC), 59.6% relative humidity (range = 39.6% - 75.9%), and 0.4 kPa water vapor pressure deficit (range = 0.2 kPa – 0.8 kPa). A maximum of 40 individuals were observed in any hibernacula and clustering behavior occurred in only 4.1% of torpid bats. Bats selected cold and dry roost sites within caves. Results suggest Pd could proliferate on some bats hibernating in colder areas of AZ hibernacula, yet the range of observed roost humidities was lower than optimal for Pd growth. Hibernation length in north-central AZ is longer than predicted for Myotis species at similar latitudes and may be long enough to pose over- winter survival risks if WNS emerges in AZ populations. Yet, a natural tendency for mid-winter activity, which I observed by multiple species, may allow for foraging opportunities and water replenishment, and therefore promote survival in bats utilizing these arid and cold habitats in winter. Additionally, the relatively solitary behaviors I observed, including virtually no clustering activity and a maximum of 40 bats per hibernacula, may keep rates of Pd transmission low in these Southwest bat populations.
ContributorsHutcherson, Hayden K (Author) / Bateman, Heather (Thesis advisor) / Moore, Marianne (Committee member) / Lewis, Jesse (Committee member) / Arizona State University (Publisher)
Created2023