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- All Subjects: Biology
- All Subjects: Ecology
- Creators: Bateman, Heather L
Description
Modified and artificial water sources can be used as a management tool for game and non-game wildlife species. State, federal, and private agencies allocate significant resources to install and maintain artificial water sources (AWS) annually. Capture mark recapture methods were used to sample small mammal communities in the vicinity of five AWS and five paired control sites (treatments) in the surrounding Sonoran desert from October 2011 to May 2012. I measured plant species richness, density, and percent cover in the spring of 2012. A Multi-response Permutation Procedure was used to identify differences in small mammal community abundance, biomass, and species richness by season and treatment. I used Principle Component Analysis to reduce 11 habitat characteristics to five habitat factors. I related rodent occurrence to habitat characteristics using multiple and logistic regression. A total of 370 individual mammals representing three genera and eight species of rodents were captured across 4800 trap nights. Desert pocket mouse (Chaetodipus penicillatus) was the most common species in both seasons and treatments. Whereas rodent community abundance, biomass, and richness were similar between seasons, community variables of AWS were greater than CS. Rodent diversity was similar between treatments. Desert pocket mouse abundance and biomass were twice as high at AWS when compared to controls. Biomass of white-throated woodrat (Neotoma albigula) was five times greater at AWS. Habitat characteristics were similar between treatments. Neither presence of water nor distance to water explained substantial habitat variation. Occurrence of rodent species was associated with habitat characteristics. Desert rodent communities are adapted for arid environments (i.e. Heteromyids) and are not dependent on "free water". Higher abundances of desert pocket mouse at AWS were most likely related to increased disturbance and debris and not the presence of water. The results of this study and previous studies suggest that more investigation is needed and that short term studies may not be able to detect interactions (if any) between AWS and desert small mammal communities.
ContributorsSwitalski, Aaron (Author) / Bateman, Heather L (Thesis advisor) / Miller, William (Committee member) / Alford, Eddie (Committee member) / Arizona State University (Publisher)
Created2013
Description
Biological diversity is threatened by increasing anthropogenic modification of natural environments and increasing demands on natural resources. Sonoran desert tortoises (Gopherus morafkai) currently have Candidate status under the Endangered Species Act (ESA) based on health and habitat threats. To ensure this animal persists in the midst of multiple threats requires an understanding of the life history and ecology of each population. I looked at one physiological and one behavioral aspect of a population of tortoises at the Sugarloaf Mountain (SL) study site in central Arizona, USA. I used 21 years of capture-recapture records to estimate growth parameters of the entire population. I investigated habitat selection of juvenile tortoises by selecting 117 locations of 11 tortoises that had been tracked by radio-telemetry one to three times weekly for two years, selecting locations from both summer active season and during winter hibernation. I compared 22 microhabitat variables of tortoise locations to random SL locations to determine habitat use and availability. Male tortoises at SL reach a greater asymptotic length than females, and males and females appear to grow at the same rate. Juvenile tortoises at the SL site use steep rocky hillsides with high proportions of sand and annual vegetation, few succulents, and enclosed shelters in summer. They use enclosed shelters on steep slopes for winter hibernation. An understanding of these features can allow managers to quantify Sonoran desert tortoise habitat needs and life history characteristics and to understand the impact of land use policies.
ContributorsBridges, Andrew (Author) / Bateman, Heather L (Thesis advisor) / Miller, William (Committee member) / Ulrich, Jon (Committee member) / Arizona State University (Publisher)
Created2012
Description
Microalgae represent a potential sustainable alternative for the enhancement and protection of agricultural crops. The dry biomass and cellular extracts of Scenedesmus dimorphus were applied as a biofertilizer, a foliar spray, and a seed primer to evaluate seed germination, plant growth, and crop yield of Roma tomato plants. The dry biomass was applied as a biofertilizer at 50 g and 100 g per plant, to evaluate its effects on plant development and crop yield. Biofertilizer treatments enhanced plant growth and led to greater crop (fruit) production. Timing of biofertilizer application proved to be of importance - earlier 50 g biofertilizer application resulted in greater plant growth. Scenedesmus dimorphus culture, growth medium, and different concentrations (1%, 5%, 10%, 25%, 50%, 75%, 100%) of aqueous cell extracts were used as seed primers to determine effects on germination. Seeds treated with Scenedesmus dimorphus culture and with extract concentrations higher than 50 % (0.75 g ml-1) triggered faster germination - 2 days earlier than the control group. Extract foliar sprays of 50 ml and 100 ml, were obtained and applied to tomato plants at various extract concentrations (10%, 25%, 50%, 75% and 100%). Plant height, flower development and number of branches were significantly enhanced with 50 % (7.5 g ml-1) extracts. Higher concentration sprays led to a decrease in growth. The extracts were further screened to assess potential antimicrobial activity against the bacterium Escherichia coli ATCC 25922, the fungi Candida albicans ATCC 90028 and Aspergillus brasiliensis ATCC 16404. No antimicrobial activity was observed from the microalga extracts on the selected microorganisms.
ContributorsGarcia-Gonzalez, Jesus (Author) / Sommerfeld, Milton (Thesis advisor) / Steele, Kelly (Committee member) / Henderson, Mark (Committee member) / Arizona State University (Publisher)
Created2014
Description
In riparian ecosystems, reptiles and amphibians are good indicators of environmental conditions. Herpetofauna have been linked to specific microhabitat characteristics, microclimates, and water resources in riparian forests. My objective was to relate herpetofauna abundance to changes in riparian habitat along the Virgin River caused by the Tamarix biological control agent, Diorhabda carinulata, and riparian restoration.
During 2013 and 2014, vegetation and herpetofauna were monitored at 21 riparian locations along the Virgin River via trapping and visual encounter surveys. Study sites were divided into four stand types based on density and percent cover of dominant trees (Tamarix, Prosopis, Populus, and Salix) and presence of restoration activities: Tam, Tam-Pros, Tam-Pop/Sal, and Restored Tam-Pop/Sal. Restoration activities consisted of mechanical removal of non-native trees, transplanting native trees, and introduction of water flow. All sites were affected by biological control. I predicted that herpetofauna abundance would vary between stand types and that herpetofauna abundance would be greatest in Restored Tam-Pop/Sal sites due to increased habitat openness and variation following restoration efforts.
Results from trapping indicated that Restored Tam-Pop/Sal sites had three times more total lizard and eight times more Sceloporus uniformis captures than other stand types. Anaxyrus woodhousii abundance was greatest in Tam-Pop/Sal and Restored Tam-Pop/Sal sites. Visual encounter surveys indicated that herpetofauna abundance was greatest in the Restored Tam-Pop/Sal site compared to the adjacent Unrestored Tam-Pop/Sal site. Habitat variables were reduced to six components using a principle component analysis and significant differences were detected among stand types. Restored Tam-Pop/Sal sites were most similar to Tam-Pop/Sal sites. S. uniformis were positively associated with large woody debris and high densities of Populus, Salix, and large diameter Prosopis.
Restored Tam-Pop/Sal sites likely supported higher abundances of herpetofauna, as these areas exhibited greater habitat heterogeneity. Restoration activities created a mosaic habitat by reducing canopy cover and increasing native tree density and surface water. Natural resource managers should consider implementing additional restoration efforts following biological control when attempting to restore riparian areas dominated by Tamarix and other non-native trees.
During 2013 and 2014, vegetation and herpetofauna were monitored at 21 riparian locations along the Virgin River via trapping and visual encounter surveys. Study sites were divided into four stand types based on density and percent cover of dominant trees (Tamarix, Prosopis, Populus, and Salix) and presence of restoration activities: Tam, Tam-Pros, Tam-Pop/Sal, and Restored Tam-Pop/Sal. Restoration activities consisted of mechanical removal of non-native trees, transplanting native trees, and introduction of water flow. All sites were affected by biological control. I predicted that herpetofauna abundance would vary between stand types and that herpetofauna abundance would be greatest in Restored Tam-Pop/Sal sites due to increased habitat openness and variation following restoration efforts.
Results from trapping indicated that Restored Tam-Pop/Sal sites had three times more total lizard and eight times more Sceloporus uniformis captures than other stand types. Anaxyrus woodhousii abundance was greatest in Tam-Pop/Sal and Restored Tam-Pop/Sal sites. Visual encounter surveys indicated that herpetofauna abundance was greatest in the Restored Tam-Pop/Sal site compared to the adjacent Unrestored Tam-Pop/Sal site. Habitat variables were reduced to six components using a principle component analysis and significant differences were detected among stand types. Restored Tam-Pop/Sal sites were most similar to Tam-Pop/Sal sites. S. uniformis were positively associated with large woody debris and high densities of Populus, Salix, and large diameter Prosopis.
Restored Tam-Pop/Sal sites likely supported higher abundances of herpetofauna, as these areas exhibited greater habitat heterogeneity. Restoration activities created a mosaic habitat by reducing canopy cover and increasing native tree density and surface water. Natural resource managers should consider implementing additional restoration efforts following biological control when attempting to restore riparian areas dominated by Tamarix and other non-native trees.
ContributorsMosher, Kent (Author) / Bateman, Heather L (Thesis advisor) / Stromberg, Juliet C. (Committee member) / Miller, William H. (Committee member) / Arizona State University (Publisher)
Created2014
Description
Worldwide, riverine floodplains are among the most endangered landscapes. In response to anthropogenic impacts, riverine restoration projects are considerably increasing. However, there is a paucity of information on how riparian rehabilitation activities impact non-avian wildlife communities. I evaluated herpetofauna abundance, species richness, diversity (i.e., Shannon and Simpson indices), species-specific responses, and riparian microhabitat characteristics along three reaches (i.e., wildland, urban rehabilitated, and urban disturbed) of the Salt River, Arizona. The surrounding uplands of the two urbanized reaches were dominated by the built environment (i.e., Phoenix metropolitan area). I predicted that greater diversity of microhabitat and lower urbanization would promote herpetofauna abundance, richness, and diversity. In 2010, at each reach, I performed herpetofauna visual surveys five times along eight transects (n=24) spanning the riparian zone. I quantified twenty one microhabitat characteristics such as ground substrate, vegetative cover, woody debris, tree stem density, and plant species richness along each transect. Herpetofauna species richness was the greatest along the wildland reach, and the lowest along the urban disturbed reach. The wildland reach had the greatest diversity indices, and diversity indices of the two urban reaches were similar. Abundance of herpetofauna was approximately six times lower along the urban disturbed reach compared to the two other reaches, which had similar abundances. Principal Component Analysis (PCA) reduced microhabitat variables to five factors, and significant differences among reaches were detected. Vegetation structure complexity, vegetation species richness, as well as densities of Prosopis (mesquite), Salix (willow), Populus (cottonwood), and animal burrows had a positive correlation with at least one of the three herpetofauna community parameter quantified (i.e., herpetofauna abundance, species richness, and diversity indices), and had a positive correlation with at least one herpetofauna species. Overall, rehabilitation activities positively influenced herpetofauna abundance and species richness, whereas urbanization negatively influenced herpetofauna diversity indices. Based on herpetofauna/microhabitat correlations established, I developed recommendations regarding microhabitat features that should be created in order to promote herpetofauna when rehabilitating degraded riparian systems. Recommendations are to plant vegetation of different growth habit, provide woody debris, plant Populus, Salix, and Prosopis of various ages and sizes, and to promote small mammal abundance.
ContributorsBanville, Mélanie Josianne (Author) / Bateman, Heather L (Thesis advisor) / Brady, Ward (Committee member) / Stromberg, Juliet (Committee member) / Arizona State University (Publisher)
Created2011
Description
For the past 30 years wildlife biologists have debated the need of pronghorn antelope (Antilocapra americana) to drink freestanding water (free water). Some have suggested that pronghorn may feed at night to increase preformed water (plant moisture) intake, thus decreasing their dependence on free water. Pronghorn diet composition and nutrient intake is integral to understanding water available to pronghorn through preformed and metabolic sources. The dual purpose of this study was to determine plant composition of pronghorn diets, and to examine whether night feeding provides a water allocation advantage by testing for differences between day and night and modeling free water requirements during biologically critical seasons and years of different precipitation. I determined species composition, selected nutrients, and moisture content of American pronghorn diets on Perry Mesa, Arizona in March, May, June and August of 2008 and 2009. I used microhistological analysis of fecal samples to determine percent plant composition of pronghorn diets. I used forage samples to evaluate the nutrient composition of those diets for moisture, crude protein and structural carbohydrates, and to calculate metabolic water. I used calculations proposed by Fox et al. (2000) to model free water requirements and modified the equations to reflect increased requirements for lactation. Diet analysis revealed that pronghorn used between 67% and 99% forbs and suggested fair range conditions. Preformed water was not significantly different between night and day. Night feeding appeared to be of marginal advantage, providing an average potential 9% preformed water increase in 2008, and 3% in 2009. The model indicated that neither male nor female pronghorn could meet their water requirements from preformed and metabolic water during any time period, season or year. The average free water requirements for females ranged from 0.67 L/animal/day (SE 0.06) in March, 2008 to 3.12 L/animal/day (SE 0.02) in June, 2009. The model showed that American pronghorn on Perry Mesa require access to free water during biological stress periods.
ContributorsTluczek, Melanie (Author) / Miller, William H. (Thesis advisor) / Brown, David E. (Committee member) / Steele, Kelly (Committee member) / Arizona State University (Publisher)
Created2012
Description
Is it possible to treat the mouth as a natural environment, and determine new methods to keep the microbiome in check? The need for biodiversity in health may suggest that every species carries out a specific function that is required to maintain equilibrium and homeostasis within the oral cavity. Furthermore, the relationship between the microbiome and its host is mutually beneficial because the host is providing microbes with an environment in which they can flourish and, in turn, keep their host healthy. Reviewing examples of larger scale environmental shifts could provide a window by which scientists can make hypotheses. Certain medications and healthcare treatments have been proven to cause xerostomia. This disorder is characterized by a dry mouth, and known to be associated with a change in the composition, and reduction, of saliva. Two case studies performed by Bardow et al, and Leal et al, tested and studied the relationships of certain medications and confirmed their side effects on the salivary glands [2,3]. Their results confirmed a relationship between specific medicines, and the correlating complaints of xerostomia. In addition, Vissink et al conducted case studies that helped to further identify how radiotherapy causes hyposalivation of the salivary glands [4]. Specifically patients that have been diagnosed with oral cancer, and are treated by radiotherapy, have been diagnosed with xerostomia. As stated prior, studies have shown that patients having an ecologically balanced and diverse microbiome tend to have healthier mouths. The oral cavity is like any biome, consisting of commensalism within itself and mutualism with its host. Due to the decreased salivary output, caused by xerostomia, increased parasitic bacteria build up within the oral cavity thus causing dental disease. Every human body contains a personalized microbiome that is essential to maintaining health but capable of eliciting disease. The Human Oral Microbiomics Database (HOMD) is a set of reference 16S rRNA gene sequences. These are then used to define individual human oral taxa. By conducting metagenomic experiments at the molecular and cellular level, scientists can identify and label micro species that inhabit the mouth during parasitic outbreaks or a shifting of the microbiome. Because the HOMD is incomplete, so is our ability to cure, or prevent, oral disease. The purpose of the thesis is to research what is known about xerostomia and its effects on the complex microbiome of the oral cavity. It is important that researchers determine whether this particular perspective is worth considering. In addition, the goal is to create novel experiments for treatment and prevention of dental diseases.
ContributorsHalcomb, Michael Jordan (Author) / Chen, Qiang (Thesis director) / Steele, Kelly (Committee member) / Barrett, The Honors College (Contributor) / College of Letters and Sciences (Contributor)
Created2015-05
Description
Abstract
Purpose—Use a framework of genetic knowledge to investigate the association between the genotypes of various genes with phenotypes, specifically the traits of elite athletes, in order to establish a personal opinion on their relevance to athletic performance.
Methods—Assemble and analyze selected published scientific studies on genotype and athletic performance and lastly to formulate a personal opinion on the value of genetic testing of athletes. ACTN3, ACE, MSTN, and apoE were the genes selected for analyses.
Results—Two genes, ACTN3 and ACE, showed a significant relationship of genotype to phenotypic traits related to athletic performance. ApoE did not demonstrate a phenotypic association with athletic performance, however it showed a correlation with injury susceptibility leading to traumatic brain injury (TBI). MSTN did not show a phenotypic association with athletic performance.
Conclusion—When considering the multifactorial nature of athletics, each sport must be investigated individually due to the different individual requirements. ACTN3 and ACE are the most widely studied genes, therefore, considerable data on their relevance to athletic performance was easily obtained and supported a relationship between genotype and athletic performance.
Purpose—Use a framework of genetic knowledge to investigate the association between the genotypes of various genes with phenotypes, specifically the traits of elite athletes, in order to establish a personal opinion on their relevance to athletic performance.
Methods—Assemble and analyze selected published scientific studies on genotype and athletic performance and lastly to formulate a personal opinion on the value of genetic testing of athletes. ACTN3, ACE, MSTN, and apoE were the genes selected for analyses.
Results—Two genes, ACTN3 and ACE, showed a significant relationship of genotype to phenotypic traits related to athletic performance. ApoE did not demonstrate a phenotypic association with athletic performance, however it showed a correlation with injury susceptibility leading to traumatic brain injury (TBI). MSTN did not show a phenotypic association with athletic performance.
Conclusion—When considering the multifactorial nature of athletics, each sport must be investigated individually due to the different individual requirements. ACTN3 and ACE are the most widely studied genes, therefore, considerable data on their relevance to athletic performance was easily obtained and supported a relationship between genotype and athletic performance.
ContributorsMinto, Jordan Taylor- Lloyd (Author) / Steele, Kelly (Thesis director) / Penton, C. Ryan (Committee member) / College of Integrative Sciences and Arts (Contributor) / Barrett, The Honors College (Contributor)
Created2017-05
Description
Anthropogenic linear infrastructures, including roads, railways, and canals, provide important resources to humans. However, linear infrastructures can reduce landscape connectivity for many wildlife populations. To mitigate these effects, crossing structures and crossing areas can facilitate animal movement across linear infrastructures. Compared to roads, little research has evaluated the factors influencing wildlife use of crossings along major canals. The Central Arizona Project (CAP) canal is a major linear feature in Arizona, and exhibits multiple types of crossing structures and areas. In Chapter 1, the objective was to evaluate the spatial (i.e., landscape features, crossing attributes) and temporal (i.e., season, time of day) factors influencing wildlife use of overpasses (n = 43) and siphons (n = 13) along the CAP canal. Using remote wildlife cameras, 17 species were detected using overpasses and siphons along the CAP canal during one year. Animals exhibited species-specific preferences for landscape features, such as topography and vegetation, and canal crossing types, although many species decreased use of overpasses associated with human development. In Chapter 2, the objective was to evaluate the influence of human activities at overpasses on use by mule deer across multiple analytical scales. Mule deer occupancy and relative habitat use at overpasses decreased in relation to human activity, including recreation. In Chapter 3, the objective was to evaluate seasonal use of underpasses (n = 12) by mammals, reptiles, amphibians, and invertebrates. Using specialized remote wildlife cameras, 30 species were detected using underpasses along the CAP canal across three seasons, and some animals exhibited variable crossing frequencies in relation to the summer monsoon season. Overall in this project, several species of small to large-sized mammals, reptiles, amphibians, and invertebrates used a variety of crossing types, including overpasses and underpasses, along a major canal. Ultimately, this study suggests that to promote landscape connectivity for the wildlife community associated with canals and other types of linear infrastructures, it is important to provide a variety of crossing types that occur across a range of landscape characteristics.
ContributorsHamilton, Kaela M (Author) / Lewis, Jesse S (Thesis advisor) / Bateman, Heather L (Committee member) / Arizona State University (Publisher)
Created2023
Description
Genome-wide, single nucleotide polymorphisms (SNPs) and germination data were analyzed to better understand species delimitation and salt-tolerance within the legume genus Medicago. Molecular phylogenies revealed that the widely-used, genomic model line R108 and two deeply divergent accessions of Medicago truncatula are in fact more closely related to Medicago littoralis than to other accessions representing Medicago truncatula. This result was supported by germination data wherein the two accessions representing deeply divergent Medicago truncatula demonstrated salt-tolerance that was more similar to Medicago littoralis than to other accessions of Medicago truncatula. Molecular phylogenies revealed that two additional accessions representing deeply divergent Medicago truncatula appear to be more closely related to Medicago italica than to other accessions representing Medicago truncatula. The results of the present study elucidate complex evolutionary relationships and contribute to the present understanding of existing salt-tolerance within Medicago.
ContributorsHopkins, Andrew David (Author) / Wojciechowski, Martin (Thesis advisor) / Park, Yujin (Committee member) / Steele, Kelly (Committee member) / Arizona State University (Publisher)
Created2023