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- Creators: Turaga, Pavan
the habitual patterns of dancers from different backgrounds and vernaculars. Contextually,
the term habitual patterns is defined as the postures or poses that tend to re-appear,
often unintentionally, as the dancer performs improvisational dance. The focus lies in exposing
the movement vocabulary of a dancer to reveal his/her unique fingerprint.
The proposed approach for uncovering these movement patterns is to use a clustering
technique; mainly k-means. In addition to a static method of analysis, this paper uses
an online method of clustering using a streaming variant of k-means that integrates into
the flow of components that can be used in a real-time interactive dance performance. The
computational system is trained by the dancer to discover identifying patterns and therefore
it enables a feedback loop resulting in a rich exchange between dancer and machine. This
can help break a dancer’s tendency to create similar postures, explore larger kinespheric
space and invent movement beyond their current capabilities.
This paper describes a project that distinguishes itself in that it uses a custom database
that is curated for the purpose of highlighting the similarities and differences between various
movement forms. It puts particular emphasis on the process of choosing source movement
qualitatively, before the technological capture process begins.
Agassiz’s desert tortoise (Gopherus agassizii) is a long-lived species native to the Mojave Desert and is listed as threatened under the US Endangered Species Act. To aid conservation efforts for preserving the genetic diversity of this species, we generated a whole genome reference sequence with an annotation based on deep transcriptome sequences of adult skeletal muscle, lung, brain, and blood. The draft genome assembly for G. agassizii has a scaffold N50 length of 252 kbp and a total length of 2.4 Gbp. Genome annotation reveals 20,172 protein-coding genes in the G. agassizii assembly, and that gene structure is more similar to chicken than other turtles. We provide a series of comparative analyses demonstrating (1) that turtles are among the slowest-evolving genome-enabled reptiles, (2) amino acid changes in genes controlling desert tortoise traits such as shell development, longevity and osmoregulation, and (3) fixed variants across the Gopherus species complex in genes related to desert adaptations, including circadian rhythm and innate immune response. This G. agassizii genome reference and annotation is the first such resource for any tortoise, and will serve as a foundation for future analysis of the genetic basis of adaptations to the desert environment, allow for investigation into genomic factors affecting tortoise health, disease and longevity, and serve as a valuable resource for additional studies in this species complex.
Data Availability: All genomic and transcriptomic sequence files are available from the NIH-NCBI BioProject database (accession numbers PRJNA352725, PRJNA352726, and PRJNA281763). All genome assembly, transcriptome assembly, predicted protein, transcript, genome annotation, repeatmasker, phylogenetic trees, .vcf and GO enrichment files are available on Harvard Dataverse (doi:10.7910/DVN/EH2S9K).