In the 1930s, George Beadle and Boris Ephrussi discovered factors that affect eye colors in developing fruit flies. They did so while working at the California Institute of Technology in Pasadena, California. (1) They took optic discs (colored fuchsia in the image) from fruit fly larvae in the third instar stage of development. Had the flies not been manipulated, they would have developed into adults with vermilion eyes. (2) Beadle and Ephrussi transplanted the donor optic discs into the bodies of several types of larvae, including those that would develop with normal colored eyes (brick red), and those that would develop eyes with other shades of red, such as claret, carmine, peach, and ruby (grouped together and colored black in the image). (3a) When implanted into normal hosts that would develop brick red eyes, the transplanted optic disc developed into an eye that also was brick red. (3b) When implanted into abnormal hosts that would develop eyes of some other shade of red, the transplanted optic discs developed into eyes that were vermilion. Beadle and Ephrussi concluded that there was a factor, such as an enzyme or some other protein, produced outside of the optic disc that influenced the color of the eye that developed from the disc.

Fruit flies of the species Drosophila melanogaster develop from eggs to adults in eight to ten days at 25 degrees Celsius. They develop through four primary stages: egg, larva, pupa, and adult. When in the wild, female flies lay their fertilized eggs in rotting fruit or other decomposing material that can serve as food for the larvae. In the lab, fruit flies lay their fertilized eggs in a mixture of agar, molasses, cornmeal, and yeast. After roughly a day, each egg hatches into a larva. The larva eats the material it finds itself in, and for four days it grows into stages of increasing size, called first-, second-, and third-instar stages. This figure shows a third-instar larva. Each larva has sections of tissue called imaginal discs, from which various parts of the adult anatomy develop. This figure shows the imaginal discs that will develop into antennae (colored purple), eyes (colored red), brain (colored blue), and wings (colored green). After four days, the larva turns into a pupa by making a casing, similar to caterpillars, and grows within the casing. After a four-day metamorphosis, the adult fly then emerges from its pupal casing. Adult males look somewhat different from adult females, as the males have darker rear abdomen segments than do females. The warmer the temperature around the eggs, the faster the flies develop to adults.

This diagram shows the life cycle of Neurospora crassa, a mold that grows on bread. N. crassa can reproduce through an asexual cycle or a sexual cycle. The asexual cycle (colored as a purple circle), begins in this figure with (1a) vegetative mycelium, which are strands of mature fungus. Some of the strands form bulbs (2a) in a process called conidiation. From those bulbs develop the conidia, which are spores. Next, (3a) a single conidium separates from its strand and elongates until it forms mycelium. The sexual cycle (colored as an orange circle) also starts with the (1b) vegetative mycelium. The strands develop into a structure called the proto-perithecium, and reproduction involves the proto-perithecium interacting with the conidia from a different mycelium. Reproduction also involves two mating types, called type A and type a. In reproduction, type A pairs with type a, and a conidium can be of either type, as can a proto-perithecium. A proto-perithecium fertilized by a conidium of the opposite mating type (2b) will develop into a perithecium. Inside the perithecium, croziers develop and mature into asci. (3b) In a maturing ascus, there are two nuclei (one represented as a white circle and one as a black circle), one of which comes from the conidium and the other from the proto-perithecium. Each nuclei has only one set of chromosomes (haploid). The two haploid nuclei fuse into a diploid nucleus (represented as a half black half white circle). The nucleus then divides, separating into two nuclei each with one set of chromosomes. Those nuclei duplicate themselves (represented as two white circles and two black circles), and then all the nuclei duplicate themselves again (represented as four white circles and four black circles). This process yields eight haploid ascospores within a mature ascus. Ascospores are spores, and function for the mold as do seeds for plants. The mature perithecium releases its ascospores (4b), which germinate and grow into mycelium. In the 1930s and 1940s, George Beadle and Ed Tatum collected the spores of irradiated N. crassa to study how genes produced enzymes.

In 1935, George Beadle and Boris Ephrussi developed a technique to transplant optic discs between fruit fly larvae. They developed it while at the California Institute of Technology in Pasedena, California. Optic discs are tissues from which the adult eyes develop. Beadle and Ephrussi used their technique to study the development of the eye and eye pigment. (1) The experimenter dissects a donor larva, which is in the third instar stage of development, and removes the optic disc (colored red) with a micropipette. Because the antenna disc is attached to the optic disc, they are often removed and transplanted together. (2) The experimenter then implants the optic disc into a host larva, in the part of the host that will develop into an adult abdomen. As the host larva matures to adulthood, the implanted optic disc develops into an eye inside the body cavity of the adult. (3) The adult host has an eye within its body, which Beadle and Ephrussi found by dissecting the adult hosts. If the antenna disc was also transplanted, sometimes the resulting eye developed with an antenna attached.

In 1893, Julia Barlow Platt published her research on the origins of cartilage in the developing head of the common mudpuppy (Necturus maculosus) embryo. The mudpuppy is an aquatic salamander commonly used by embryologists because its large embryonic cells and nuclei are easy to see. Platt followed the paths of cells in developing mudpuppy embryos to see how embryonic cells migrated during the formation of the head. With her research, Platt challenged then current theories about germ layers, the types of cells in an early embryo that develop into adult cells. In most organisms' development, three types of germ layers are responsible for the formation of tissues and organs. The outermost layer is called ectoderm, the middle layer mesoderm, and the innermost layer endoderm, although Platt called it entoderm. Platt's research provided a basis for scientists to clarify the destination or function of the germ layers in vertebrates' development.

Arthur Earl Walker was a medical researcher and physician who studied the brain and neurosurgery in the United States during the twentieth century. Walker examined the connections of the thalamus to the rest of the brain and how the thalamus coordinates sensory signals. The thalamus is a cluster of nerve cells located between the two hemispheres of the brain and it is responsible for consciousness and sensory interpretation. While studying the thalamus, Walker noticed that cerebral spinal fluid, the clear fluid surrounding the brain and spinal cord, sometimes became obstructed in certain parts of the brain in infants. Scientists linked the cerebral spinal fluid obstruction with a congenital brain malformation, later called Dandy-Walker Syndrome. Walker's work on the brain and cerebral spinal fluid enabled early diagnosis and treatment for complications in the development of the brain.

Aristotle studied developing organisms, among other things, in ancient Greece, and his writings shaped Western philosophy and natural science for greater than two thousand years. He spent much of his life in Greece and studied with Plato at Plato's Academy in Athens, where he later established his own school called the Lyceum. Aristotle wrote greater than 150 treatises on subjects ranging from aesthetics, politics, ethics, and natural philosophy, which include physics and biology. Less than fifty of Aristotle's treatises persisted into the twenty-first century. In natural philosophy, later called natural science, Aristotle established methods for investigation and reasoning and provided a theory on how embryos generate and develop. He originated the theory that an organism develops gradually from undifferentiated material, later called epigenesis.

Edmund Beecher Wilson in the US published An Atlas of Fertilization and Karyokinesis of the Ovum (hereafter called An Atlas) in 1895. The book presents photographs by photographer Edward Leaming that capture stages of fertilization, the fusion of sperm and egg and early development of sea urchin (Toxopneustes variegatus) ova, or egg cell. Prior to An Atlas, no one photographed of eggcell division in clear detail. Wilson obtained high quality images of egg cells by cutting the cells into thin sections and preserving them throughout different stages of development. An Atlas helped Wilson develop methods to present key stages of fertilization and development, which he later used in his textbook The Cell in Development and Inheritance, first published in 1896. Furthermore, An Atlas was the first publication to present accurate images of the fertilized egg cell during early stages of development.