Matching Items (9)
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- All Subjects: Environmental science
- All Subjects: carbon cycling
- Genre: Academic theses
- Genre: Masters Thesis
- Creators: Grimm, Nancy
- Creators: Krajmalnik-Brown, Rosa
- Member of: Theses and Dissertations
Description
Dissolved organic matter (DOM) is an important part of aquatic foodwebs because it contains carbon, nitrogen, and other elements required by heterotrophic organisms. It has many sources that determine its molecular composition, nutrient content, and biological lability and in turn, influence whether it is retained and processed in the stream reach or exported downstream. I examined the composition of DOM from vascular wetland plants, filamentous algae, and riparian tree leaf litter in Sonoran Desert streams and its decomposition by stream microbes. I used a combination of field observations, in-situ experiments, and a manipulative laboratory incubation to test (1) how dominant primary producers influence DOM chemical composition and ecosystem metabolism at the reach scale and (2) how DOM composition and nitrogen (N) content control microbial decomposition and stream uptake of DOM. I found that differences in streamwater DOM composition between two distinct reaches of Sycamore Creek did not affect in-situ stream respiration and gross primary production rates. Stream sediment microbial respiration rates did not differ significantly when incubated in the laboratory with DOM from wetland plants, algae, and leaf litter, thus all sources were similarly labile. However, whole-stream uptake of DOM increased from leaf to algal to wetland plant leachate. Desert streams have the potential to process DOM from leaf, wetland, and algal sources, though algal and wetland DOM, due to their more labile composition, can be more readily retained and mineralized.
ContributorsKemmitt, Kathrine (Author) / Grimm, Nancy (Thesis advisor) / Hartnett, Hilairy (Committee member) / Throop, Heather (Committee member) / Arizona State University (Publisher)
Created2018
Description
Trichloroethene (TCE) and hexavalent chromium (Cr (VI)) are ubiquitous subsurface contaminants affecting the water quality and threatening human health. Microorganisms capable of TCE and Cr (VI) reductions can be explored for bioremediation at contaminated sites. The goal of my dissertation research was to address challenges that decrease the efficiency of bioremediation in the subsurface. Specifically, I investigated strategies to (i) promote improve microbial reductive dechlorination extent through the addition of Fe0 and (ii) Cr (VI) bio-reduction through enrichment of specialized microbial consortia. Fe0 can enhance microbial TCE reduction by inducing anoxic conditions and generating H2 (electron donor). I first evaluated the effect of Fe0 on microbial reduction of TCE (with ClO4– as co-contaminant) using semi-batch soil microcosms. Results showed that high concentration of Fe0 expected during in situ remediation inhibited microbial TCE and ClO4– reduction when added together with Dehalococcoides mccartyi-containing cultures. A low concentration of aged Fe0 enhanced microbial TCE dechlorination to ethene and supported complete microbial ClO4– reduction. I then evaluated a decoupled Fe0 and biostimulation/bioaugmentation treatment approach using soil packed columns with continuous flow of groundwater. I demonstrated that microbial TCE reductive dechlorination to ethene can be benefitted by Fe0 abiotic reactions, when biostimulation and bioaugmentation are performed downstream of Fe0 addition. Furthermore, I showed that ethene production can be sustained in the presence of aerobic groundwater (after Fe0 exhaustion) by the addition of organic substrates. I hypothesized that some lessons learned from TCE Bioremediation can be applied also for other pollutants that can benefit from anaerobic reductions, like Cr (VI). Bioremediation of Cr (VI) has historically relied on biostimulation of native microbial communities, partially due to the lack of knowledge of the benefits of adding enriched consortia of specialized microorganisms (bioaugmentation). To determine the merits of a specialized consortium on bio-reduction of Cr (VI), I first enriched a culture on lactate and Cr (VI). The culture had high abundance of putative Morganella species and showed rapid and sustained Cr (VI) bio-reduction compared to a subculture grown with lactate only (without Morganella). Overall, this dissertation work documents possible strategies for synergistic abiotic and biotic chlorinated ethenes reduction, and highlights that specialized consortia may benefit Cr (VI) bio-reduction.
ContributorsMohana Rangan, Srivatsan (Author) / Krajmalnik-Brown, Rosa (Thesis advisor) / Delgado, Anca G (Thesis advisor) / Torres, César I (Committee member) / van Paassen, Leon (Committee member) / Arizona State University (Publisher)
Created2022
Description
Under current climate conditions northern peatlands mostly act as C sinks; however, changes in climate and environmental conditions, can change the soil carbon decomposition cascade, thus altering the sink status. Here I studied one of the most abundant northern peatland types, poor fen, situated along a climate gradient from tundra (Daring Lake, Canada) to boreal forest (Lutose, Canada) to temperate broadleaf and mixed forest (Bog Lake, MN and Chicago Bog, NY) biomes to assess patterns of microbial abundance across the climate gradient. Principal component regression analysis of the microbial community and environmental variables determined that mean annual temperature (MAT) (r2=0.85), mean annual precipitation (MAP) (r2=0.88), and soil temperature (r2=0.77), were the top significant drivers of microbial community composition (p < 0.001). Niche breadth analysis revealed the relative abundance of Intrasporangiaceae, Methanobacteriaceae and Candidatus Methanoflorentaceae fam. nov. to increase when MAT and MAP decrease. The same analysis showed Spirochaetaceae, Methanosaetaceae and Methanoregulaceae to increase in relative abundance when MAP, soil temperature and MAT increased, respectively. These findings indicated that climate variables were the strongest predictors of microbial community composition and that certain taxa, especially methanogenic families demonstrate distinct patterns across the climate gradient. To evaluate microbial production of methanogenic substrates, I carried out High Resolution-DNA-Stable Isotope Probing (HR-DNA-SIP) to evaluate the active portion of the community’s intermediary ecosystem metabolic processes. HR-DNA-SIP revealed several challenges in efficiency of labelling and statistical identification of responders, however families like Veillonellaceae, Magnetospirillaceae, Acidobacteriaceae 1, were found ubiquitously active in glucose amended incubations. Differences in metabolic byproducts from glucose amendments show distinct patterns in acetate and propionate accumulation across sites. Families like Spirochaetaceae and Sphingomonadaceae were only found to be active in select sites of propionate amended incubations. By-product analysis from propionate incubations indicate that the northernmost sites were acetate-accumulating communities.
These results indicate that microbial communities found in poor fen northern peatlands are strongly influenced by climate variables predicted to change under current climate scenarios. I have identified patterns of relative abundance and activity of select microbial taxa, indicating the potential for climate variables to influence the metabolic pathway in which carbon moves through peatland systems.
ContributorsSarno, Analissa Flores (Author) / Cadillo-Quiroz, Hinsby (Thesis advisor) / Garcia-Pichel, Ferran (Committee member) / Krajmalnik-Brown, Rosa (Committee member) / Childers, Daniel (Committee member) / Arizona State University (Publisher)
Created2022
Characterization and Manipulation of Microbiomes From Arid Landfills for Improved Methane Production
Description
Environmentally harmful byproducts from solid waste’s decomposition, including methane (CH4) emissions, are managed through standardized landfill engineering and gas-capture mechanisms. Yet only a limited number of studies have analyzed the development and composition of Bacteria and Archaea involved in CH4 production from landfills. The objectives of this research were to compare microbiomes and bioactivity from CH4-producing communities in contrasting spatial areas of arid landfills and to tests a new technology to biostimulate CH4 production (methanogenesis) from solid waste under dynamic environmental conditions controlled in the laboratory. My hypothesis was that the diversity and abundance of methanogenic Archaea in municipal solid waste (MSW), or its leachate, play an important role on CH4 production partially attributed to the group’s wide hydrogen (H2) consumption capabilities. I tested this hypothesis by conducting complementary field observations and laboratory experiments. I describe niches of methanogenic Archaea in MSW leachate across defined areas within a single landfill, while demonstrating functional H2-dependent activity. To alleviate limited H2 bioavailability encountered in-situ, I present biostimulant feasibility and proof-of-concepts studies through the amendment of zero valent metals (ZVMs). My results demonstrate that older-aged MSW was minimally biostimulated for greater CH4 production relative to a control when exposed to iron (Fe0) or manganese (Mn0), due to highly discernable traits of soluble carbon, nitrogen, and unidentified fluorophores found in water extracts between young and old aged, starting MSW. Acetate and inhibitory H2 partial pressures accumulated in microcosms containing old-aged MSW. In a final experiment, repeated amendments of ZVMs to MSW in a 600 day mesocosm experiment mediated significantly higher CH4 concentrations and yields during the first of three ZVM injections. Fe0 and Mn0 experimental treatments at mesocosm-scale also highlighted accelerated development of seemingly important, but elusive Archaea including Methanobacteriaceae, a methane-producing family that is found in diverse environments. Also, prokaryotic classes including Candidatus Bathyarchaeota, an uncultured group commonly found in carbon-rich ecosystems, and Clostridia; All three taxa I identified as highly predictive in the time-dependent progression of MSW decomposition. Altogether, my experiments demonstrate the importance of H2 bioavailability on CH4 production and the consistent development of Methanobacteriaceae in productive MSW microbiomes.
ContributorsReynolds, Mark Christian (Author) / Cadillo-Quiroz, Hinsby (Thesis advisor) / Krajmalnik-Brown, Rosa (Thesis advisor) / Wang, Xuan (Committee member) / Kavazanjian, Edward (Committee member) / Arizona State University (Publisher)
Created2022
Description
Climate change is one of the most pressing issues facing humanity, and cities are likely to experience many of the most dangerous effects of climate change. One way that cities aim to adapt to become more resilient to climate change is through the provision of locally produced ecosystem services: the benefits that people get from nature. In cities, these ecosystem services are provided by diverse forms of urban ecological infrastructure (UEI): all parts of a city that include ecological structure and function. While there is a growing body of research touting the multifunctionality of UEI and an increasing number of cities implementing UEI plans, there remain important gaps in understanding how UEI features perform at providing ecosystem services and how the local social-ecological-technological context affects the efficacy of UEI solutions. Inspired by the need for cities to adapt to become more resilient to climate change, this dissertation takes an interdisciplinary approach to understand how diverse UEI features and their ecosystem services are perceived, provided, and prioritized for current and future climate resilience. The second chapter explores how a diverse group of local actors in Valdivia, Chile perceives the city’s urban wetlands and identifies common trade-offs in the perceived importance of different ecosystem services from the wetlands. The third chapter demonstrates species-level differences and trade-offs between common street trees in Phoenix, Arizona in their ability to provide the ecosystem services of both local climate regulation and stormwater regulation. The fourth chapter compares how participatory scenarios from nine cities across the United States and Latin America vary in the degree to which they incorporate UEI and ecosystem services into future visions. The fifth chapter returns focus to Phoenix and illustrates dominant perspectives on the prioritization of ecosystem services for achieving climate resilience and how those priorities change across temporal scales. The dissertation concludes with a synthesis of the previous chapters and suggestions for future urban ecosystem services research. Combined, this dissertation advances understanding of ecosystem services from UEI and highlights the importance of considering trade-offs among UEI features in order help achieve more just, verdant, and resilient urban futures.
ContributorsElser, Stephen Robert (Author) / Grimm, Nancy (Thesis advisor) / Berbés-Blázquez, Marta (Committee member) / Cook, Elizabeth (Committee member) / McPhillips, Lauren (Committee member) / York, Abigail (Committee member) / Arizona State University (Publisher)
Created2022
Description
Soil organic carbon (SOC) is a critical component of the global carbon (C) cycle, accounting for more C than the biotic and atmospheric pools combined. Microbes play an important role in soil C cycling, with abiotic conditions such as soil moisture and temperature governing microbial activity and subsequent soil C processes. Predictions for future climate include warmer temperatures and altered precipitation regimes, suggesting impacts on future soil C cycling. However, it is uncertain how soil microbial communities and subsequent soil organic carbon pools will respond to these changes, particularly in dryland ecosystems. A knowledge gap exists in soil microbial community responses to short- versus long-term precipitation alteration in dryland systems. Assessing soil C cycle processes and microbial community responses under current and altered precipitation patterns will aid in understanding how C pools and cycling might be altered by climate change. This study investigates how soil microbial communities are influenced by established climate regimes and extreme changes in short-term precipitation patterns across a 1000 m elevation gradient in northern Arizona, where precipitation increases with elevation. Precipitation was manipulated (50% addition and 50% exclusion of ambient rainfall) for two summer rainy seasons at five sites across the elevation gradient. In situ and ex situ soil CO2 flux, microbial biomass C, extracellular enzyme activity, and SOC were measured in precipitation treatments in all sites. Soil CO2 flux, microbial biomass C, extracellular enzyme activity, and SOC were highest at the three highest elevation sites compared to the two lowest elevation sites. Within sites, precipitation treatments did not change microbial biomass C, extracellular enzyme activity, and SOC. Soil CO2 flux was greater under precipitation addition treatments than exclusion treatments at both the highest elevation site and second lowest elevation site. Ex situ respiration differed among the precipitation treatments only at the lowest elevation site, where respiration was enhanced in the precipitation addition plots. These results suggest soil C cycling will respond to long-term changes in precipitation, but pools and fluxes of carbon will likely show site-specific sensitivities to short-term precipitation patterns that are also expected with climate change.
ContributorsMonus, Brittney (Author) / Throop, Heather L (Thesis advisor) / Ball, Becky A (Committee member) / Hultine, Kevin R (Committee member) / Munson, Seth M (Committee member) / Arizona State University (Publisher)
Created2019
Description
Spatial and temporal patterns of biodiversity are shaped, in part, by the resources available to biota, the efficiency of resource transfer through the food web, and variation in environmental conditions. Stream and riparian zones are dynamic systems connected through reciprocal resource exchange and shaped by floods, droughts, and long-term patterns in the quantity, timing, and variability of streamflow (flow regime). The interdependent nature of the stream-riparian ecosystem defies the scope of any single discipline, requiring novel approaches to untangle the controls on ecological processes. In this dissertation, I explored multiple mechanisms through which streamflow and energy flow pathways maintain the community and trophic dynamics of desert stream and riparian food webs. I conducted seasonal sampling of Arizona streams on a gradient of flow regime variability to capture fluctuations in aquatic communities and ecosystem production. I found that flow regime shapes fish community structure and the trajectory of community response following short-term flow events by constraining the life history traits of communities, which fluctuate in prevalence following discrete events. Streamflow may additionally constrain the efficiency of energy flow from primary producers to consumers. I estimated annual food web efficiency and found that efficiency decreased with higher temperature and more variable flow regime. Surprisingly, fish production was not related to the rate of aquatic primary production. To understand the origin of resources supporting aquatic and riparian food webs, I studied the contribution of aquatic and terrestrial primary production to consumers in both habitats. I demonstrated that emergent insects “recycled” terrestrial primary production back to the riparian zone, reducing the proportion of aquatic primary production in emergent insect biomass and riparian predator diet. To expand the concept of stream and riparian zones as an integrated ecosystem connected by resource cycling through the food web, I introduced a quantitative framework describing reciprocal interconnections across spatial boundaries and demonstrated strong aquatic-riparian interdependencies along an Arizona river. In this dissertation, I develop a novel perspective on the stream-riparian ecosystem as an intertwined food web, which may be vulnerable to unforeseen impacts of global change if not considered in the context of streamflow and resource dynamics.
ContributorsBaruch, Ethan Max (Author) / Sabo, John (Thesis advisor) / Bateman, Heather (Committee member) / Cease, Arianne (Committee member) / Grimm, Nancy (Committee member) / Arizona State University (Publisher)
Created2021
Assessing the Response of Macroinvertebrate Communities to River Flow Dynamics in the Sonoran Desert
Description
Climate change is causing hydrologic intensification globally by increasing both the frequency and magnitude of floods and droughts. While environmental variation is a key regulator at all levels of ecological organization, such changes to the hydrological cycle that are beyond the normal range of variability can have strong impacts on stream and riparian ecosystems within sensitive landscapes, such as the American Southwest. The main objective of this study was to investigate how anomalous hydrologic variability influences macroinvertebrate communities in desert streams. I studied seasonal changes in aquatic macroinvertebrate abundances in eleven streams that encompass a hydrologic gradient across Arizona’s Sonoran Desert. This analysis was coupled with the quantification and assessment of stochastic hydrology to determine influences of flow regimes and discrete events on invertebrate community composition. I found high community variability within sites, illustrated by seasonal measures of beta diversity and nonmetric multidimensional scaling (NMDS) plots. I observed notable patterns of NMDS data points when invertebrate abundances were summarized by summer versus winter surveys. These results suggest that there is a difference within the communities between summer and winter seasons, irrespective of differences in site hydroclimate. Estimates of beta diversity were the best metric for summarizing and comparing diversity among sites, compared to richness difference and replacement. Seasonal measures of beta diversity either increased, decreased, or stayed constant across the study period, further demonstrating the high variation within and among study sites. Regime shifts, summarized by regime shift frequency (RSF) and mean net annual anomaly (NAA), and anomalous events, summarized by the power of blue noise (Maximum Blue Noise), were the best predictors of macroinvertebrate diversity, and thus should be more widely applied to ecological data. These results suggest that future studies of community composition in freshwater systems should focus on understanding the cause of variation in biodiversity gradients. This study highlights the importance of considering both flow regimes and discrete anomalous events when studying spatial and temporal variation in stream communities.
ContributorsSainz, Ruby (Author) / Sabo, John L (Thesis advisor) / Grimm, Nancy (Committee member) / Stampoulis, Dimitrios (Committee member) / Arizona State University (Publisher)
Created2021
Description
Functioning freshwater ecosystems are widely recognized as a planetary boundary for the continued human inhabitation of our planet, but little is known about the tradeoffs at the nexus of food, energy and water. In this dissertation I explored the effects of hydrologic variability in the Lower Mekong Basin (LMB) on rice production and functional structure of fish catches. I then examined the tradeoffs at the intersection of fish and rice harvest as a function of hydrologic variability and modeled production under novel engineered hydrologic scenarios. I modeled rice production using a Multivariate Autoregressive State Space (MARSS) model and mechanistically tested for the effect of saline intrusion. I found rice production to be heterogeneously affected by hydrology; in saline afflicted areas, floods had a positive effect size on production, whereas in non-saline afflicted areas, floods had a negative effect size on production. To address hydrologic filtering of the functional structure of fish catches, I collected thousands of specimens from over 100 LMB species in collaboration with Cambodia’s Inland Fisheries Research and Development institute and the Royal University of Agriculture. LMB fishes comprise a large portion of the 1,200 known species in the basin and have historically provided a substantial amount of animal protein to 60 million people in the region. Using an RLQ, co-inertia analysis, I found four functionally relevant morphological trats that were significantly associated with hydrologic variation—mouth position, maxillary length, relative body depth, and relative head depth. These traits are associated with many of the threated species in the LMB, which make up a large portion of the 1200 known species in the basin and have historically provided a substantial amount of animal protein to 60 million people in the region. To examine the tradeoffs within food systems, I used MARSS maximum likelihood estimation to forecast fish and rice production throughout the LMB under different hydrologic scenarios. I end my dissertation with an opinion piece on NexGen Mekong Scientists, a program I started in 2020 with funding from the United States Department of State.
ContributorsHolway, Joseph Henry (Author) / Sabo, John (Thesis advisor) / Grimm, Nancy (Committee member) / Holtgrieve, Gordon (Committee member) / Winemiller, Kirk (Committee member) / Hanemann, Michael (Committee member) / Arizona State University (Publisher)
Created2024