Matching Items (182,904)
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Description

Pathogenic and nonpathogenic species of bacteria and fungi release membrane vesicles (MV), containing proteins, polysaccharides, and lipids, into the extracellular milieu. Previously, we demonstrated that several mycobacterial species, including bacillus Calmette-Guerin (BCG) and Mycobacterium tuberculosis, release MV containing lipids and proteins that subvert host immune response in a Toll-like receptor

Pathogenic and nonpathogenic species of bacteria and fungi release membrane vesicles (MV), containing proteins, polysaccharides, and lipids, into the extracellular milieu. Previously, we demonstrated that several mycobacterial species, including bacillus Calmette-Guerin (BCG) and Mycobacterium tuberculosis, release MV containing lipids and proteins that subvert host immune response in a Toll-like receptor 2 (TLR2)-dependent manner (R. Prados-Rosales et al., J. Clin. Invest. 121:1471–1483, 2011, doi:10.1172/JCI44261). In this work, we analyzed the vaccine potential of MV in a mouse model and compared the effects of immunization with MV to those of standard BCG vaccination. Immunization with MV from BCG or M. tuberculosis elicited a mixed humoral and cellular response directed to both membrane and cell wall components, such as lipoproteins. However, only vaccination with M. tuberculosis MV was able to protect as well as live BCG immunization. M. tuberculosis MV boosted BCG vaccine efficacy. In summary, MV are highly immunogenic without adjuvants and elicit immune responses comparable to those achieved with BCG in protection against M. tuberculosis.

ContributorsPrados-Rosales, Rafael (Author) / Carreno, Leandro J. (Author) / Batista-Gonzalez, Ana (Author) / Baena, Andres (Author) / Venkataswamy, Manjunatha M. (Author) / Xu, Jiayong (Author) / Yu, Xiaobo (Author) / Wallstrom, Garrick (Author) / Magee, Mitch (Author) / LaBaer, Joshua (Author) / Achkar, Jacqueline M. (Author) / Jacobs, William R. (Author) / Chan, John (Author) / Porcelli, Steven A. (Author) / Casadevall, Arturo (Author) / Biodesign Institute (Contributor)
Created2014-09-30
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Description

Recently, near-field thermal radiation has attracted much attention in several fields since it can exceed the Planck blackbody limit through the coupling of evanescent waves. In this work, near-field radiative heat transfer between two semi-infinite dual uniaxial electromagnetic metamaterials with two different material property sets is theoretically analyzed. The near-field

Recently, near-field thermal radiation has attracted much attention in several fields since it can exceed the Planck blackbody limit through the coupling of evanescent waves. In this work, near-field radiative heat transfer between two semi-infinite dual uniaxial electromagnetic metamaterials with two different material property sets is theoretically analyzed. The near-field radiative heat transfer is calculated using fluctuational electrodynamics incorporated with anisotropic wave optics. The underlying mechanisms, namely, magnetic hyperbolic mode, magnetic surface polariton, electrical hyperbolic mode, and electrical surface polariton, between two homogeneous dual uniaxial electromagnetic metamaterials are investigated by examining the transmission coefficient and the spectral heat flux. The effect of vacuum gap distance is also studied, which shows that the enhancement at smaller vacuum gap is mainly due to hyperbolic mode and surface plasmon polariton modes. In addition, the results show that the contribution of s-polarized waves is significant and should not be excluded due to the strong magnetic response regardless of vacuum gap distances. The fundamental understanding and insights obtained here will facilitate the finding and application of novel materials for near-field thermal radiation.

ContributorsChang, Jui-Yung (Author) / Basu, Soumyadipta (Author) / Yang, Yue (Author) / Wang, Liping (Author) / Ira A. Fulton Schools of Engineering (Contributor)
Created2016-06-07
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Description

We introduce a non-Hermitian Schrödinger-type approximation of optical Bloch equations for two-level systems. This approximation provides a complete and accurate description of the coherence and decoherence dynamics in both weak and strong laser fields at the cost of losing accuracy in the description of populations. In this approach, it is

We introduce a non-Hermitian Schrödinger-type approximation of optical Bloch equations for two-level systems. This approximation provides a complete and accurate description of the coherence and decoherence dynamics in both weak and strong laser fields at the cost of losing accuracy in the description of populations. In this approach, it is sufficient to propagate the wave function of the quantum system instead of the density matrix, providing that relaxation and dephasing are taken into account via automatically adjusted time-dependent gain and decay rates. The developed formalism is applied to the problem of scattering and absorption of electromagnetic radiation by a thin layer comprised of interacting two-level emitters.

ContributorsPuthumpally-Joseph, Raiju (Author) / Sukharev, Maxim (Author) / Charron, Eric (Author) / College of Liberal Arts and Sciences (Contributor)
Created2016-04-20
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Description

The valley degree of freedom in two-dimensional (2D) crystals recently emerged as a novel information carrier in addition to spin and charge. The intrinsic valley lifetime in 2D transition metal dichalcogenides (TMD) is expected to be markedly long due to the unique spin-valley locking behavior, where the intervalley scattering of

The valley degree of freedom in two-dimensional (2D) crystals recently emerged as a novel information carrier in addition to spin and charge. The intrinsic valley lifetime in 2D transition metal dichalcogenides (TMD) is expected to be markedly long due to the unique spin-valley locking behavior, where the intervalley scattering of the electron simultaneously requires a large momentum transfer to the opposite valley and a flip of the electron spin. However, the experimentally observed valley lifetime in 2D TMDs has been limited to tens of nanoseconds thus far. We report efficient generation of microsecond-long-lived valley polarization in WSe2/MoS2 heterostructures by exploiting the ultrafast charge transfer processes in the heterostructure that efficiently creates resident holes in the WSe2 layer. These valley-polarized holes exhibit near-unity valley polarization and ultralong valley lifetime: We observe a valley-polarized hole population lifetime of more than 1 μs and a valley depolarization lifetime (that is, intervalley scattering lifetime) of more than 40 μs at 10 K. The near-perfect generation of valley-polarized holes in TMD heterostructures, combined with ultralong valley lifetime, which is orders of magnitude longer than previous results, opens up new opportunities for novel valleytronics and spintronics applications.

ContributorsKim, Jonghwan (Author) / Jin, Chenhao (Author) / Chen, Bin (Author) / Cai, Hui (Author) / Zhao, Tao (Author) / Lee, Puiyee (Author) / Kahn, Salman (Author) / Watanabe, Kenji (Author) / Taniguchi, Takashi (Author) / Tongay, Sefaattin (Author) / Crommie, Michael F. (Author) / Wang, Feng (Author) / Ira A. Fulton Schools of Engineering (Contributor)
Created2017-07-26
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Description

The optical properties of bulk InAs0.936Bi0.064 grown by molecular beam epitaxy on a (100)-oriented GaSb substrate are measured using spectroscopic ellipsometry. The index of refraction and absorption coefficient are measured over photon energies ranging from 44 meV to 4.4 eV and are used to identify the room temperature bandgap energy of bulk

The optical properties of bulk InAs0.936Bi0.064 grown by molecular beam epitaxy on a (100)-oriented GaSb substrate are measured using spectroscopic ellipsometry. The index of refraction and absorption coefficient are measured over photon energies ranging from 44 meV to 4.4 eV and are used to identify the room temperature bandgap energy of bulk InAs0.936Bi0.064 as 60.6 meV. The bandgap of InAsBi is expressed as a function of Bi mole fraction using the band anticrossing model and a characteristic coupling strength of 1.529 eV between the Bi impurity state and the InAs valence band.

These results are programmed into a software tool that calculates the miniband structure of semiconductor superlattices and identifies optimal designs in terms of maximizing the electron-hole wavefunction overlap as a function of transition energy. These functionalities are demonstrated by mapping the design spaces of lattice-matched GaSb/InAs0.911Sb0.089 and GaSb/InAs0.932Bi0.068 and strain-balanced InAs/InAsSb, InAs/GaInSb, and InAs/InAsBi superlattices on GaSb. The absorption properties of each of these material systems are directly compared by relating the wavefunction overlap square to the absorption coefficient of each optimized design. Optimal design criteria are provided for key detector wavelengths for each superlattice system. The optimal design mid-wave infrared InAs/InAsSb superlattice is grown using molecular beam epitaxy, and its optical properties are evaluated using spectroscopic ellipsometry and photoluminescence spectroscopy.

Created2016-06-08
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Description

The ‘Hestia Project’ uses a bottom-up approach to quantify fossil fuel CO2(FFCO2) emissions spatially at the building/street level and temporally at the hourly level. Hestia FFCO2 emissions are provided in the form of a group of sector-specific vector layers with point, line, and polygon sources to support carbon cycle science

The ‘Hestia Project’ uses a bottom-up approach to quantify fossil fuel CO2(FFCO2) emissions spatially at the building/street level and temporally at the hourly level. Hestia FFCO2 emissions are provided in the form of a group of sector-specific vector layers with point, line, and polygon sources to support carbon cycle science and climate policy. Application to carbon cycle science, in particular, requires regular gridded data in order to link surface carbon fluxes to atmospheric transport models. However, the heterogeneity and complexity of FFCO2 sources within regular grids is sensitive to spatial resolution. From the perspective of a data provider, we need to find a balance between resolution and data volume so that the gridded data product retains the maximum amount of information content while maintaining an efficient data volume.

The Shannon entropy determines the minimum bits that are needed to encode an information source and can serve as a metric for the effective information content. In this paper, we present an analysis of the Shannon entropy of gridded FFCO2 emissions with varying resolutions in four Hestia study areas, and find: (1) the Shannon entropy increases with smaller grid resolution until it reaches a maximum value (the max-entropy resolution); (2) total emissions (the sum of several sector-specific emission fields) show a finer max-entropy resolution than each of the sector-specific fields; (3) the residential emissions show a finer max-entropy resolution than the commercial emissions; (4) the max-entropy resolution of the onroad emissions grid is closely correlated to the density of the road network. These findings suggest that the Shannon entropy can detect the information effectiveness of the spatial resolution of gridded FFCO2 emissions. Hence, the resolution-entropy relationship can be used to assist in determining an appropriate spatial resolution for urban CO2 flux studies. We conclude that the optimal spatial resolution for providing Hestia total FFCO2 emissions products is centered around 100 m, at which the FFCO2 emissions data can not only fully meet the requirement of urban flux integration, but also be effectively used in understanding the relationships between FFCO2 emissions and various social-economic variables at the U.S. census block group level.

ContributorsLiang, Jianming (Author) / Gurney, Kevin (Author) / O'Keeffe, Darragh (Author) / Hutchins, Maya (Author) / Patarasuk, Risa (Author) / Huang, Jianhua (Author) / Song, Yang (Author) / Rao, Preeti (Author) / College of Liberal Arts and Sciences (Contributor)
Created2017-05-19
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Description

The smart-grid approach undergoes many difficulties regarding the strategy that will enable its actual implementation. In this paper, an overview of real-time simulation technologies and their applicability to the smart-grid approach are presented as enabling steps toward the smart-grid’s actual implementation. The objective of this work is to contribute with

The smart-grid approach undergoes many difficulties regarding the strategy that will enable its actual implementation. In this paper, an overview of real-time simulation technologies and their applicability to the smart-grid approach are presented as enabling steps toward the smart-grid’s actual implementation. The objective of this work is to contribute with an introductory text for interested readers of real-time systems in the context of modern electric needs and trends. In addition, a comprehensive review of current applications of real-time simulation in electric systems is provided, together with the basis to understand real-time simulation and the topologies and hardware used to implement it. Furthermore, an overview of the evolution of real-time simulators in the industrial and academic background and its current challenges are introduced.

ContributorsIbarra, Luis (Author) / Rosales, Antonio (Author) / Ponce, Pedro (Author) / Molina, Arturo (Author) / Ayyanar, Raja (Author) / Ira A. Fulton Schools of Engineering (Contributor)
Created2017-06-16
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Description

Photoconvertible fluorescent proteins (pcFPs) constitute a large group of fluorescent proteins related to green fluorescent protein (GFP) that, when exposed to blue light, bear the capability of irreversibly switching their emission color from green to red. Not surprisingly, this fascinating class of FPs has found numerous applications, in particular for

Photoconvertible fluorescent proteins (pcFPs) constitute a large group of fluorescent proteins related to green fluorescent protein (GFP) that, when exposed to blue light, bear the capability of irreversibly switching their emission color from green to red. Not surprisingly, this fascinating class of FPs has found numerous applications, in particular for the visualization of biological processes. A detailed understanding of the photoconversion mechanism appears indispensable in the design of improved variants for applications such as super-resolution imaging. In this article, recent work is reviewed that involves using pcFPs as a model system for studying protein dynamics. Evidence has been provided that the evolution of pcFPs from a green ancestor involved the natural selection for altered dynamical features of the beta-barrel fold. It appears that photoconversion may be the outcome of a long-range positional shift of a fold-anchoring region. A relatively stiff, rigid element appears to have migrated away from the chromophore-bearing section to the opposite edge of the barrel, thereby endowing pcFPs with increased active site flexibility while keeping the fold intact. In this way, the stage was set for the coupling of light absorption with subsequent chemical transformations. The emerging mechanistic model suggests that highly specific dynamic motions are linked to key chemical steps, preparing the system for a concerted deprotonation and β-elimination reaction that enlarges the chromophore’s π-conjugation to generate red color.

ContributorsWachter, Rebekka (Author) / College of Liberal Arts and Sciences (Contributor)
Created2017-08-18
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Description

We report photon-noise limited performance of horn-coupled, aluminum lumped-element kinetic inductance detectors at millimeter wavelengths. The detectors are illuminated by a millimeter-wave source that uses an active multiplier chain to produce radiation between 140 and 160 GHz. We feed the multiplier with either amplified broadband noise or a continuous-wave tone from

We report photon-noise limited performance of horn-coupled, aluminum lumped-element kinetic inductance detectors at millimeter wavelengths. The detectors are illuminated by a millimeter-wave source that uses an active multiplier chain to produce radiation between 140 and 160 GHz. We feed the multiplier with either amplified broadband noise or a continuous-wave tone from a microwave signal generator. We demonstrate that the detector response over a 40 dB range of source power is well-described by a simple model that considers the number of quasiparticles. The detector noise-equivalent power (NEP) is dominated by photon noise when the absorbed power is greater than approximately 1 pW, which corresponds to NEP ≈ 2 × 10-17 W Hz-1/2, referenced to absorbed power. At higher source power levels, we observe the relationships between noise and power expected from the photon statistics of the source signal: NEP ∝ P for broadband (chaotic) illumination and NEP ∝ P1/2 for continuous-wave (coherent) illumination.

ContributorsFlanigan, D. (Author) / McCarrick, H. (Author) / Jones, G. (Author) / Johnson, B. R. (Author) / Abitbol, M. H. (Author) / Ade, P. (Author) / Araujo, D. (Author) / Bradford, K. (Author) / Cantor, R. (Author) / Che, George (Author) / Day, P. (Author) / Doyle, S. (Author) / Kjellstrand, C. B. (Author) / Leduc, H. (Author) / Limon, M. (Author) / Luu, V. (Author) / Mauskopf, Philip (Author) / Miller, A. (Author) / Mroczkowski, T. (Author) / Tucker, C. (Author) / Zmuidzinas, J. (Author) / College of Liberal Arts and Sciences (Contributor)
Created2016-02-25
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Description

Ants are a highly successful family of insects that thrive in a variety of habitats across the world. Perhaps their best-known features are complex social organization and strict division of labor, separating reproduction from the day-to-day maintenance and care of the colony, as well as strict discrimination against foreign individuals.

Ants are a highly successful family of insects that thrive in a variety of habitats across the world. Perhaps their best-known features are complex social organization and strict division of labor, separating reproduction from the day-to-day maintenance and care of the colony, as well as strict discrimination against foreign individuals. Since these social characteristics in ants are thought to be mediated by semiochemicals, a thorough analysis of these signals, and the receptors that detect them, is critical in revealing mechanisms that lead to stereotypic behaviors. To address these questions, we have defined and characterized the major chemoreceptor families in a pair of behaviorally and evolutionarily distinct ant species, Camponotus floridanus and Harpegnathos saltator. Through comprehensive re-annotation, we show that these ant species harbor some of the largest yet known repertoires of odorant receptors (Ors) among insects, as well as a more modest number of gustatory receptors (Grs) and variant ionotropic glutamate receptors (Irs).

Our phylogenetic analyses further demonstrate remarkably rapid gains and losses of ant Ors, while Grs and Irs have also experienced birth-and-death evolution to different degrees. In addition, comparisons of antennal transcriptomes between sexes identify many chemoreceptors that are differentially expressed between males and females and between species. We have also revealed an agonist for a worker-enriched OR from C. floridanus, representing the first case of a heterologously characterized ant tuning Or. Collectively, our analysis reveals a large number of ant chemoreceptors exhibiting patterns of differential expression and evolution consistent with sex/species-specific functions. These differentially expressed genes are likely associated with sex-based differences, as well as the radically different social lifestyles observed between C. floridanus and H. saltator, and thus are targets for further functional characterization. Our findings represent an important advance toward understanding the molecular basis of social interactions and the differential chemical ecologies among ant species.

ContributorsZhou, Xiaofan (Author) / Slone, Jesse D. (Author) / Rokas, Antonis (Author) / Berger, Shelley L. (Author) / Liebig, Juergen (Author) / Ray, Anandasankar (Author) / Reinberg, Danny (Author) / Zwiebel, Laurence J. (Author) / College of Liberal Arts and Sciences (Contributor)
Created2012-08-30