Matching Items (92)
Description
Insects are able to navigate their environments because they can detect hydrocarbons and volatile odors, but it is not clear which one has the fastest reaction when detected, or how much of a response can be produced due to either one. In order to determine which category of odorant is detected first as well as which one causes the highest response rate, data on electrophysiological responses from ants was analyzed. While the statistical tests can be done to understand and answer the questions raised by the study, there are various hydrocarbons and volatile odors that were not used in the data. Conclusive evidence only applies to the odorants used in the experiments.
ContributorsDarden, Jaelyn (Author) / Gerkin, Richard (Thesis director) / Liebig, Juergen (Committee member) / School of Life Sciences (Contributor) / Barrett, The Honors College (Contributor)
Created2021-05
Description
This dissertation constructs a new computational processing framework to robustly and precisely quantify retinotopic maps based on their angle distortion properties. More generally, this framework solves the problem of how to robustly and precisely quantify (angle) distortions of noisy or incomplete (boundary enclosed) 2-dimensional surface to surface mappings. This framework builds upon the Beltrami Coefficient (BC) description of quasiconformal mappings that directly quantifies local mapping (circles to ellipses) distortions between diffeomorphisms of boundary enclosed plane domains homeomorphic to the unit disk. A new map called the Beltrami Coefficient Map (BCM) was constructed to describe distortions in retinotopic maps. The BCM can be used to fully reconstruct the original target surface (retinal visual field) of retinotopic maps. This dissertation also compared retinotopic maps in the visual processing cascade, which is a series of connected retinotopic maps responsible for visual data processing of physical images captured by the eyes. By comparing the BCM results from a large Human Connectome project (HCP) retinotopic dataset (N=181), a new computational quasiconformal mapping description of the transformed retinal image as it passes through the cascade is proposed, which is not present in any current literature. The description applied on HCP data provided direct visible and quantifiable geometric properties of the cascade in a way that has not been observed before. Because retinotopic maps are generated from in vivo noisy functional magnetic resonance imaging (fMRI), quantifying them comes with a certain degree of uncertainty. To quantify the uncertainties in the quantification results, it is necessary to generate statistical models of retinotopic maps from their BCMs and raw fMRI signals. Considering that estimating retinotopic maps from real noisy fMRI time series data using the population receptive field (pRF) model is a time consuming process, a convolutional neural network (CNN) was constructed and trained to predict pRF model parameters from real noisy fMRI data
ContributorsTa, Duyan Nguyen (Author) / Wang, Yalin (Thesis advisor) / Lu, Zhong-Lin (Committee member) / Hansford, Dianne (Committee member) / Liu, Huan (Committee member) / Li, Baoxin (Committee member) / Arizona State University (Publisher)
Created2022
Description
Retinotopic map, the map between visual inputs on the retina and neuronal activation in brain visual areas, is one of the central topics in visual neuroscience. For human observers, the map is typically obtained by analyzing functional magnetic resonance imaging (fMRI) signals of cortical responses to slowly moving visual stimuli on the retina. Biological evidences show the retinotopic mapping is topology-preserving/topological (i.e. keep the neighboring relationship after human brain process) within each visual region.
Unfortunately, due to limited spatial resolution and the signal-noise ratio of fMRI, state of art retinotopic map is not topological.
The topic was to model the topology-preserving condition mathematically, fix non-topological retinotopic map with numerical methods, and improve the quality of retinotopic maps.
The impose of topological condition, benefits several applications.
With the topological retinotopic maps, one may have a better insight on human retinotopic maps, including better cortical magnification factor quantification, more precise description of retinotopic maps, and potentially better exam ways of in Ophthalmology clinic.
ContributorsTu, Yanshuai (Author) / Wang, Yalin (Thesis advisor) / Lu, Zhong-Lin (Committee member) / Crook, Sharon (Committee member) / Yang, Yezhou (Committee member) / Zhang, Yu (Committee member) / Arizona State University (Publisher)
Created2022
Description
Neural tissue is a delicate system comprised of neurons and their synapses, glial cells for support, and vasculature for oxygen and nutrient delivery. This complexity ultimately gives rise to the human brain, a system researchers have become increasingly interested in replicating for artificial intelligence purposes. Some have even gone so far as to use neuronal cultures as computing hardware, but utilizing an environment closer to a living brain means having to grapple with the same issues faced by clinicians and researchers trying to treat brain disorders. Most outstanding among these are the problems that arise with invasive interfaces. Optical techniques that use fluorescent dyes and proteins have emerged as a solution for noninvasive imaging with single-cell resolution in vitro and in vivo, but feeding in information in the form of neuromodulation still requires implanted electrodes. The implantation process of these electrodes damages nearby neurons and their connections, causes hemorrhaging, and leads to scarring and gliosis that diminish efficacy. Here, a new approach for noninvasive neuromodulation with high spatial precision is described. It makes use of a combination of ultrasound, high frequency acoustic energy that can be focused to submillimeter regions at significant depths, and electric fields, an effective tool for neuromodulation that lacks spatial precision when used in a noninvasive manner. The hypothesis is that, when combined in a specific manner, these will lead to nonlinear effects at neuronal membranes that cause cells only in the region of overlap to be stimulated. Computational modeling confirmed this combination to be uniquely stimulating, contingent on certain physical effects of ultrasound on cell membranes. Subsequent in vitro experiments led to inconclusive results, however, leaving the door open for future experimentation with modified configurations and approaches. The specific combination explored here is also not the only untested technique that may achieve a similar goal.
ContributorsNester, Elliot (Author) / Wang, Yalin (Thesis advisor) / Muthuswamy, Jitendran (Committee member) / Towe, Bruce (Committee member) / Arizona State University (Publisher)
Created2022
Description
Beta-Amyloid(Aβ) plaques and tau protein tangles in the brain are now widely recognized as the defining hallmarks of Alzheimer’s disease (AD), followed by structural atrophy detectable on brain magnetic resonance imaging (MRI) scans. However, current methods to detect Aβ/tau pathology are either invasive (lumbar puncture) or quite costly and not widely available (positron emission tomography (PET)). And one of the particular neurodegenerative regions is the hippocampus to which the influence of Aβ/tau on has been one of the research projects focuses in the AD pathophysiological progress.
In this dissertation, I proposed three novel machine learning and statistical models to examine subtle aspects of the hippocampal morphometry from MRI that are associated with Aβ /tau burden in the brain, measured using PET images. The first model is a novel unsupervised feature reduction model to generate a low-dimensional representation of hippocampal morphometry for each individual subject, which has superior performance in predicting Aβ/tau burden in the brain. The second one is an efficient federated group lasso model to identify the hippocampal subregions where atrophy is strongly associated with abnormal Aβ/Tau. The last one is a federated model for imaging genetics, which can identify genetic and transcriptomic influences on hippocampal morphometry. Finally, I stated the results of these three models that have been published or submitted to peer-reviewed conferences and journals.
ContributorsWu, Jianfeng (Author) / Wang, Yalin (Thesis advisor) / Li, Baoxin (Committee member) / Liang, Jianming (Committee member) / Wang, Junwen (Committee member) / Wu, Teresa (Committee member) / Arizona State University (Publisher)
Created2022
Description
Structural Magnetic Resonance Imaging analysis is a vital component in the study of Alzheimer’s Disease pathology and several techniques exist as part of the existing research conducted. In particular, volumetric approaches in this field are known to be beneficial due to the increased capability to express morphological characteristics when compared to manifold methods. To aid in the improvement of the field, this paper aims to propose an intrinsic volumetric conic system that can be applied to bounded volumetric meshes to enable a more effective study of subjects. The computation of the metric involves the use of heat kernel theory and conformal parameterization on genus-0 surfaces extended to a volumetric domain. Additionally, this paper also explores the use of the ’TetCNN’ architecture on the classification of hippocampal tetrahedral meshes to detect features that correspond to Alzheimer’s indicators. The model tested was able to achieve remarkable results with a measured classification accuracy of above 90% in the task of differentiating between subjects diagnosed with Alzheimer’s and normal control subjects.
ContributorsGeorge, John Varghese (Author) / Wang, Yalin (Thesis advisor) / Hansford, Dianne (Committee member) / Gupta, Vikash (Committee member) / Arizona State University (Publisher)
Created2023
Description
Although social hierarchies are commonly found all throughout nature, the underlying mechanisms of their formation are still ambiguous. Hierarchies form through a wide range of interactions between subordinate and dominant individuals, and the ponerine ant Harpegnathos saltator provides the perfect model to explore such dominance behaviors. When the queen is absent or her fecundity levels drop below a certain threshold, H. saltator workers undergo a dominance tournament, in which several individuals emerge as gamergates, reproductive workers that are not queens. During this tournament, several characterizable dominance behaviors are exhibited (antennal dueling, dominance biting, and policing), which can be used to study the behavioral and social dynamics in the formation of a reproductive hierarchy. Colonies of 15, 30, 60, and 120 workers were created in duplicate, and their dominance tournaments were recorded to study how these interactions impact gamergate establishment. Rather than studying these behaviors as isolated incidents, responses to policing behaviors (timid, neutral, or aggressive) and their duration were recorded along with the frequency of dueling. Three groups were determined: dueling future gamergates (DFG), dueling future non-gamergates (DFNG) and non-dueling individuals (ND). DFNG received many more policing attacks and the duration of these interactions lasted much longer. DFG consistently exhibited the most dueling. Timid and neutral responses were more common than aggressive responses, perhaps due to energy conversation purposes. Peaks in dueling correspond to peaks in policing, highlighting the dynamic behavioral interactions necessary for the formation of a reproductive hierarchy.
ContributorsOlivas, Victoria (Author) / Liebig, Juergen (Thesis director) / Shaffer, Zachary (Committee member) / Barrett, The Honors College (Contributor) / School of Molecular Sciences (Contributor) / School of International Letters and Cultures (Contributor)
Created2023-05
Description
Communicating with computers through thought has been a remarkable achievement in recent years. This was made possible by the use of Electroencephalography (EEG). Brain-computer interface (BCI) relies heavily on Electroencephalography (EEG) signals for communication between humans and computers. With the advent ofdeep learning, many studies recently applied these techniques to EEG data to perform various tasks like emotion recognition, motor imagery classification, sleep analysis, and many more.
Despite the rise of interest in EEG signal classification, very few studies have explored the MindBigData dataset, which collects EEG signals recorded at the stimulus of seeing a digit and thinking about it. This dataset takes us closer to realizing the idea of mind-reading or communication via thought. Thus classifying these signals into the respective digit that the user thinks about is a challenging task. This serves as a motivation to study this dataset and apply existing deep learning techniques to study it.
Given the recent success of transformer architecture in different domains like Computer Vision and Natural language processing, this thesis studies transformer architecture for EEG signal classification. Also, it explores other deep learning
techniques for the same. As a result, the proposed classification pipeline achieves comparable performance with the existing methods.
ContributorsMuglikar, Omkar Dushyant (Author) / Wang, Yalin (Thesis advisor) / Liang, Jianming (Committee member) / Venkateswara, Hemanth (Committee member) / Arizona State University (Publisher)
Created2021
Description
Statistical Shape Modeling is widely used to study the morphometrics of deformable objects in computer vision and biomedical studies. There are mainly two viewpoints to understand the shapes. On one hand, the outer surface of the shape can be taken as a two-dimensional embedding in space. On the other hand, the outer surface along with its enclosed internal volume can be taken as a three-dimensional embedding of interests. Most studies focus on the surface-based perspective by leveraging the intrinsic features on the tangent plane. But a two-dimensional model may fail to fully represent the realistic properties of shapes with both intrinsic and extrinsic properties. In this thesis, severalStochastic Partial Differential Equations (SPDEs) are thoroughly investigated and several methods are originated from these SPDEs to try to solve the problem of both two-dimensional and three-dimensional shape analyses. The unique physical meanings of these SPDEs inspired the findings of features, shape descriptors, metrics, and kernels in this series of works. Initially, the data generation of high-dimensional shapes, here, the tetrahedral meshes, is introduced. The cerebral cortex is taken as the study target and an automatic pipeline of generating the gray matter tetrahedral mesh is introduced. Then, a discretized Laplace-Beltrami operator (LBO) and a Hamiltonian operator (HO) in tetrahedral domain with Finite Element Method (FEM) are derived. Two high-dimensional shape descriptors are defined based on the solution of the heat equation and Schrödinger’s equation. Considering the fact that high-dimensional shape models usually contain massive redundancies, and the demands on effective landmarks in many applications, a Gaussian process landmarking on tetrahedral meshes is further studied. A SIWKS-based metric space is used to define a geometry-aware Gaussian process. The study of the periodic potential diffusion process further inspired the idea of a new kernel call the geometry-aware convolutional kernel. A series of Bayesian learning methods are then introduced to tackle the problem of shape retrieval and classification. Experiments of every single item are demonstrated. From the popular SPDE such as the heat equation and Schrödinger’s equation to the general potential diffusion equation and the specific periodic potential diffusion equation, it clearly shows that classical SPDEs play an important role in discovering new features, metrics, shape descriptors and kernels. I hope this thesis could be an example of using interdisciplinary knowledge to solve problems.
ContributorsFan, Yonghui (Author) / Wang, Yalin (Thesis advisor) / Lepore, Natasha (Committee member) / Turaga, Pavan (Committee member) / Yang, Yezhou (Committee member) / Arizona State University (Publisher)
Created2021
Description
Graph matching is a fundamental but notoriously difficult problem due to its NP-hard nature, and serves as a cornerstone for a series of applications in machine learning and computer vision, such as image matching, dynamic routing, drug design, to name a few. Although there has been massive previous investigation on high-performance graph matching solvers, it still remains a challenging task to tackle the matching problem under real-world scenarios with severe graph uncertainty (e.g., noise, outlier, misleading or ambiguous link).In this dissertation, a main focus is to investigate the essence and propose solutions to graph matching with higher reliability under such uncertainty. To this end, the proposed research was conducted taking into account three perspectives related to reliable graph matching: modeling, optimization and learning. For modeling, graph matching is extended from typical quadratic assignment problem to a more generic mathematical model by introducing a specific family of separable function, achieving higher capacity and reliability. In terms of optimization, a novel high gradient-efficient determinant-based regularization technique is proposed in this research, showing high robustness against outliers. Then learning paradigm for graph matching under intrinsic combinatorial characteristics is explored. First, a study is conducted on the way of filling the gap between discrete problem and its continuous approximation under a deep learning framework. Then this dissertation continues to investigate the necessity of more reliable latent topology of graphs for matching, and propose an effective and flexible framework to obtain it. Coherent findings in this dissertation include theoretical study and several novel algorithms, with rich experiments demonstrating the effectiveness.
ContributorsYu, Tianshu (Author) / Li, Baoxin (Thesis advisor) / Wang, Yalin (Committee member) / Yang, Yezhou (Committee member) / Yang, Yingzhen (Committee member) / Arizona State University (Publisher)
Created2021