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  4. Glycoside Hydrolase Gene Families Of Termite Hindgut Protists
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Glycoside Hydrolase Gene Families Of Termite Hindgut Protists

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Description

This project was completed to understand the evolution of the ability to digest wood in termite symbiotic protists. Lower termites harbor bacterial and protist symbionts which are essential to the termite ability to use wood as a nutritional source, producing glycoside hydrolases to break down the polysaccharides found in lignocellulose. Yet, only a few molecular studies have been done to confirm the protist species responsible for particular enzymes. By mining publicly available and newly generated genomic and transcriptomic data, including three transcriptomes from isolated protist cells, I identify over 200 new glycoside hydrolase sequences and compute the phylogenies of eight glycoside hydrolase families (GHFs) reported to be expressed by termite hindgut protists.

Of those families examined, the results are broadly consistent with Todaka et al. 2010, though none of the GHFs found were expressed in both termite-associated protist and non-termite-associated protist transcriptome data. This suggests that, rather than being inherited from their free-living protist ancestors, GHF genes were acquired by termite protists while within the termite gut, potentially via lateral gene transfer (LGT). For example one family, GHF10, implies a single acquisition of a bacterial xylanase into termite protists. The phylogenies from GHF5 and GHF11 each imply two distinct acquisitions in termite protist ancestors, each from bacteria. In eukaryote-dominated GHFs, GHF7 and GHF45, there are three apparent acquisitions by termite protists. Meanwhile, it appears prior reports of GHF62 in the termite gut may have been misidentified GHF43 sequences. GHF43 was the only GHF found to contain sequences from the protists not found in the termite gut. These findings generally all support the possibility termite-associated protists adapted to a lignocellulosic diet after colonization of the termite hindgut. Nonetheless, the poor resolution of GHF phylogeny and limited termite and protist sampling constrain interpretation.

Date Created
2019
Contributors
  • Sanderlin, Viola (Author)
  • Gile, Gillian H (Thesis advisor)
  • Wojciechowski, Martin (Committee member)
  • Weiss, Taylor (Committee member)
  • Varman, Arul Mozhy (Committee member)
  • Arizona State University (Publisher)
Topical Subject
  • Bioinformatics
  • glycoside hydrolase
  • metagenome
  • metatranscriptome
  • Phylogenetics
  • protist
  • Termites
Resource Type
Text
Genre
Masters Thesis
Academic theses
Extent
82 pages
Language
eng
Copyright Statement
In Copyright
Primary Member of
ASU Electronic Theses and Dissertations
Peer-reviewed
No
Open Access
No
Handle
https://hdl.handle.net/2286/R.I.54960
Level of coding
minimal
Note
Masters Thesis Biological Design 2019
System Created
  • 2019-11-06 03:41:22
System Modified
  • 2021-08-26 09:47:01
  •     
  • 1 year 5 months ago
Additional Formats
  • OAI Dublin Core
  • MODS XML

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