Theses and Dissertations
This collection includes both ASU Theses and Dissertations, submitted by graduate students, and the Barrett, Honors College theses submitted by undergraduate students.
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- Creators: Liu, Huan
Description
Multi-label learning, which deals with data associated with multiple labels simultaneously, is ubiquitous in real-world applications. To overcome the curse of dimensionality in multi-label learning, in this thesis I study multi-label dimensionality reduction, which extracts a small number of features by removing the irrelevant, redundant, and noisy information while considering the correlation among different labels in multi-label learning. Specifically, I propose Hypergraph Spectral Learning (HSL) to perform dimensionality reduction for multi-label data by exploiting correlations among different labels using a hypergraph. The regularization effect on the classical dimensionality reduction algorithm known as Canonical Correlation Analysis (CCA) is elucidated in this thesis. The relationship between CCA and Orthonormalized Partial Least Squares (OPLS) is also investigated. To perform dimensionality reduction efficiently for large-scale problems, two efficient implementations are proposed for a class of dimensionality reduction algorithms, including canonical correlation analysis, orthonormalized partial least squares, linear discriminant analysis, and hypergraph spectral learning. The first approach is a direct least squares approach which allows the use of different regularization penalties, but is applicable under a certain assumption; the second one is a two-stage approach which can be applied in the regularization setting without any assumption. Furthermore, an online implementation for the same class of dimensionality reduction algorithms is proposed when the data comes sequentially. A Matlab toolbox for multi-label dimensionality reduction has been developed and released. The proposed algorithms have been applied successfully in the Drosophila gene expression pattern image annotation. The experimental results on some benchmark data sets in multi-label learning also demonstrate the effectiveness and efficiency of the proposed algorithms.
ContributorsSun, Liang (Author) / Ye, Jieping (Thesis advisor) / Li, Baoxin (Committee member) / Liu, Huan (Committee member) / Mittelmann, Hans D. (Committee member) / Arizona State University (Publisher)
Created2011
Description
A statement appearing in social media provides a very significant challenge for determining the provenance of the statement. Provenance describes the origin, custody, and ownership of something. Most statements appearing in social media are not published with corresponding provenance data. However, the same characteristics that make the social media environment challenging, including the massive amounts of data available, large numbers of users, and a highly dynamic environment, provide unique and untapped opportunities for solving the provenance problem for social media. Current approaches for tracking provenance data do not scale for online social media and consequently there is a gap in provenance methodologies and technologies providing exciting research opportunities. The guiding vision is the use of social media information itself to realize a useful amount of provenance data for information in social media. This departs from traditional approaches for data provenance which rely on a central store of provenance information. The contemporary online social media environment is an enormous and constantly updated "central store" that can be mined for provenance information that is not readily made available to the average social media user. This research introduces an approach and builds a foundation aimed at realizing a provenance data capability for social media users that is not accessible today.
ContributorsBarbier, Geoffrey P (Author) / Liu, Huan (Thesis advisor) / Bell, Herbert (Committee member) / Li, Baoxin (Committee member) / Sen, Arunabha (Committee member) / Arizona State University (Publisher)
Created2011
Description
Online health forums provide a convenient channel for patients, caregivers, and medical professionals to share their experience, support and encourage each other, and form health communities. The fast growing content in health forums provides a large repository for people to seek valuable information. A forum user can issue a keyword query to search health forums regarding to some specific questions, e.g., what treatments are effective for a disease symptom? A medical researcher can discover medical knowledge in a timely and large-scale fashion by automatically aggregating the latest evidences emerging in health forums.
This dissertation studies how to effectively discover information in health forums. Several challenges have been identified. First, the existing work relies on the syntactic information unit, such as a sentence, a post, or a thread, to bind different pieces of information in a forum. However, most of information discovery tasks should be based on the semantic information unit, a patient. For instance, given a keyword query that involves the relationship between a treatment and side effects, it is expected that the matched keywords refer to the same patient. In this work, patient-centered mining is proposed to mine patient semantic information units. In a patient information unit, the health information, such as diseases, symptoms, treatments, effects, and etc., is connected by the corresponding patient.
Second, the information published in health forums has varying degree of quality. Some information includes patient-reported personal health experience, while others can be hearsay. In this work, a context-aware experience extraction framework is proposed to mine patient-reported personal health experience, which can be used for evidence-based knowledge discovery or finding patients with similar experience.
At last, the proposed patient-centered and experience-aware mining framework is used to build a patient health information database for effectively discovering adverse drug reactions (ADRs) from health forums. ADRs have become a serious health problem and even a leading cause of death in the United States. Health forums provide valuable evidences in a large scale and in a timely fashion through the active participation of patients, caregivers, and doctors. Empirical evaluation shows the effectiveness of the proposed approach.
This dissertation studies how to effectively discover information in health forums. Several challenges have been identified. First, the existing work relies on the syntactic information unit, such as a sentence, a post, or a thread, to bind different pieces of information in a forum. However, most of information discovery tasks should be based on the semantic information unit, a patient. For instance, given a keyword query that involves the relationship between a treatment and side effects, it is expected that the matched keywords refer to the same patient. In this work, patient-centered mining is proposed to mine patient semantic information units. In a patient information unit, the health information, such as diseases, symptoms, treatments, effects, and etc., is connected by the corresponding patient.
Second, the information published in health forums has varying degree of quality. Some information includes patient-reported personal health experience, while others can be hearsay. In this work, a context-aware experience extraction framework is proposed to mine patient-reported personal health experience, which can be used for evidence-based knowledge discovery or finding patients with similar experience.
At last, the proposed patient-centered and experience-aware mining framework is used to build a patient health information database for effectively discovering adverse drug reactions (ADRs) from health forums. ADRs have become a serious health problem and even a leading cause of death in the United States. Health forums provide valuable evidences in a large scale and in a timely fashion through the active participation of patients, caregivers, and doctors. Empirical evaluation shows the effectiveness of the proposed approach.
ContributorsLiu, Yunzhong (Author) / Chen, Yi (Thesis advisor) / Liu, Huan (Thesis advisor) / Li, Baoxin (Committee member) / Davulcu, Hasan (Committee member) / Arizona State University (Publisher)
Created2016
Description
The rapid development in acquiring multimodal neuroimaging data provides opportunities to systematically characterize human brain structures and functions. For example, in the brain magnetic resonance imaging (MRI), a typical non-invasive imaging technique, different acquisition sequences (modalities) lead to the different descriptions of brain functional activities, or anatomical biomarkers. Nowadays, in addition to the traditional voxel-level analysis of images, there is a trend to process and investigate the cross-modality relationship in a high dimensional level of images, e.g. surfaces and networks.
In this study, I aim to achieve multimodal brain image fusion by referring to some intrinsic properties of data, e.g. geometry of embedding structures where the commonly used image features reside. Since the image features investigated in this study share an identical embedding space, i.e. either defined on a brain surface or brain atlas, where a graph structure is easy to define, it is straightforward to consider the mathematically meaningful properties of the shared structures from the geometry perspective.
I first introduce the background of multimodal fusion of brain image data and insights of geometric properties playing a potential role to link different modalities. Then, several proposed computational frameworks either using the solid and efficient geometric algorithms or current geometric deep learning models are be fully discussed. I show how these designed frameworks deal with distinct geometric properties respectively, and their applications in the real healthcare scenarios, e.g. to enhanced detections of fetal brain diseases or abnormal brain development.
In this study, I aim to achieve multimodal brain image fusion by referring to some intrinsic properties of data, e.g. geometry of embedding structures where the commonly used image features reside. Since the image features investigated in this study share an identical embedding space, i.e. either defined on a brain surface or brain atlas, where a graph structure is easy to define, it is straightforward to consider the mathematically meaningful properties of the shared structures from the geometry perspective.
I first introduce the background of multimodal fusion of brain image data and insights of geometric properties playing a potential role to link different modalities. Then, several proposed computational frameworks either using the solid and efficient geometric algorithms or current geometric deep learning models are be fully discussed. I show how these designed frameworks deal with distinct geometric properties respectively, and their applications in the real healthcare scenarios, e.g. to enhanced detections of fetal brain diseases or abnormal brain development.
ContributorsZhang, Wen (Author) / Wang, Yalin (Thesis advisor) / Liu, Huan (Committee member) / Li, Baoxin (Committee member) / Braden, B. Blair (Committee member) / Arizona State University (Publisher)
Created2020
Description
This dissertation constructs a new computational processing framework to robustly and precisely quantify retinotopic maps based on their angle distortion properties. More generally, this framework solves the problem of how to robustly and precisely quantify (angle) distortions of noisy or incomplete (boundary enclosed) 2-dimensional surface to surface mappings. This framework builds upon the Beltrami Coefficient (BC) description of quasiconformal mappings that directly quantifies local mapping (circles to ellipses) distortions between diffeomorphisms of boundary enclosed plane domains homeomorphic to the unit disk. A new map called the Beltrami Coefficient Map (BCM) was constructed to describe distortions in retinotopic maps. The BCM can be used to fully reconstruct the original target surface (retinal visual field) of retinotopic maps. This dissertation also compared retinotopic maps in the visual processing cascade, which is a series of connected retinotopic maps responsible for visual data processing of physical images captured by the eyes. By comparing the BCM results from a large Human Connectome project (HCP) retinotopic dataset (N=181), a new computational quasiconformal mapping description of the transformed retinal image as it passes through the cascade is proposed, which is not present in any current literature. The description applied on HCP data provided direct visible and quantifiable geometric properties of the cascade in a way that has not been observed before. Because retinotopic maps are generated from in vivo noisy functional magnetic resonance imaging (fMRI), quantifying them comes with a certain degree of uncertainty. To quantify the uncertainties in the quantification results, it is necessary to generate statistical models of retinotopic maps from their BCMs and raw fMRI signals. Considering that estimating retinotopic maps from real noisy fMRI time series data using the population receptive field (pRF) model is a time consuming process, a convolutional neural network (CNN) was constructed and trained to predict pRF model parameters from real noisy fMRI data
ContributorsTa, Duyan Nguyen (Author) / Wang, Yalin (Thesis advisor) / Lu, Zhong-Lin (Committee member) / Hansford, Dianne (Committee member) / Liu, Huan (Committee member) / Li, Baoxin (Committee member) / Arizona State University (Publisher)
Created2022
Description
Machine learning models and in specific, neural networks, are well known for being inscrutable in nature. From image classification tasks and generative techniques for data augmentation, to general purpose natural language models, neural networks are currently the algorithm of preference that is riding the top of the current artificial intelligence (AI) wave, having experienced the greatest boost in popularity above any other machine learning solution. However, due to their inscrutable design based on the optimization of millions of parameters, it is ever so complex to understand how their decision is influenced nor why (and when) they fail. While some works aim at explaining neural network decisions or making systems to be inherently interpretable the great majority of state of the art machine learning works prioritize performance over interpretability effectively becoming black boxes. Hence, there is still uncertainty in the decision boundaries of these already deployed solutions whose predictions should still be analyzed and taken with care. This becomes even more important when these models are used on sensitive scenarios such as medicine, criminal justice, settings with native inherent social biases or where egregious mispredictions can negatively impact the system or human trust down the line. Thus, the aim of this work is to provide a comprehensive analysis on the failure modes of the state of the art neural networks from three domains: large image classifiers and their misclassifications, generative adversarial networks when used for data augmentation and transformer networks applied to structured representations and reasoning about actions and change.
ContributorsOlmo Hernandez, Alberto (Author) / Kambhampati, Subbarao (Thesis advisor) / Liu, Huan (Committee member) / Li, Baoxin (Committee member) / Sengupta, Sailik (Committee member) / Arizona State University (Publisher)
Created2022
Description
Graph is a ubiquitous data structure, which appears in a broad range of real-world scenarios. Accordingly, there has been a surge of research to represent and learn from graphs in order to accomplish various machine learning and graph analysis tasks. However, most of these efforts only utilize the graph structure while nodes in real-world graphs usually come with a rich set of attributes. Typical examples of such nodes and their attributes are users and their profiles in social networks, scientific articles and their content in citation networks, protein molecules and their gene sets in biological networks as well as web pages and their content on the Web. Utilizing node features in such graphs---attributed graphs---can alleviate the graph sparsity problem and help explain various phenomena (e.g., the motives behind the formation of communities in social networks). Therefore, further study of attributed graphs is required to take full advantage of node attributes.
In the wild, attributed graphs are usually unlabeled. Moreover, annotating data is an expensive and time-consuming process, which suffers from many limitations such as annotators’ subjectivity, reproducibility, and consistency. The challenges of data annotation and the growing increase of unlabeled attributed graphs in various real-world applications significantly demand unsupervised learning for attributed graphs.
In this dissertation, I propose a set of novel models to learn from attributed graphs in an unsupervised manner. To better understand and represent nodes and communities in attributed graphs, I present different models in node and community levels. In node level, I utilize node features as well as the graph structure in attributed graphs to learn distributed representations of nodes, which can be useful in a variety of downstream machine learning applications. In community level, with a focus on social media, I take advantage of both node attributes and the graph structure to discover not only communities but also their sentiment-driven profiles and inter-community relations (i.e., alliance, antagonism, or no relation). The discovered community profiles and relations help to better understand the structure and dynamics of social media.
In the wild, attributed graphs are usually unlabeled. Moreover, annotating data is an expensive and time-consuming process, which suffers from many limitations such as annotators’ subjectivity, reproducibility, and consistency. The challenges of data annotation and the growing increase of unlabeled attributed graphs in various real-world applications significantly demand unsupervised learning for attributed graphs.
In this dissertation, I propose a set of novel models to learn from attributed graphs in an unsupervised manner. To better understand and represent nodes and communities in attributed graphs, I present different models in node and community levels. In node level, I utilize node features as well as the graph structure in attributed graphs to learn distributed representations of nodes, which can be useful in a variety of downstream machine learning applications. In community level, with a focus on social media, I take advantage of both node attributes and the graph structure to discover not only communities but also their sentiment-driven profiles and inter-community relations (i.e., alliance, antagonism, or no relation). The discovered community profiles and relations help to better understand the structure and dynamics of social media.
ContributorsSalehi, Amin (Author) / Davulcu, Hasan (Thesis advisor) / Liu, Huan (Committee member) / Li, Baoxin (Committee member) / Tong, Hanghang (Committee member) / Arizona State University (Publisher)
Created2019
Description
The rapid advancements of technology have greatly extended the ubiquitous nature of smartphones acting as a gateway to numerous social media applications. This brings an immense convenience to the users of these applications wishing to stay connected to other individuals through sharing their statuses, posting their opinions, experiences, suggestions, etc on online social networks (OSNs). Exploring and analyzing this data has a great potential to enable deep and fine-grained insights into the behavior, emotions, and language of individuals in a society. This proposed dissertation focuses on utilizing these online social footprints to research two main threads – 1) Analysis: to study the behavior of individuals online (content analysis) and 2) Synthesis: to build models that influence the behavior of individuals offline (incomplete action models for decision-making).
A large percentage of posts shared online are in an unrestricted natural language format that is meant for human consumption. One of the demanding problems in this context is to leverage and develop approaches to automatically extract important insights from this incessant massive data pool. Efforts in this direction emphasize mining or extracting the wealth of latent information in the data from multiple OSNs independently. The first thread of this dissertation focuses on analytics to investigate the differentiated content-sharing behavior of individuals. The second thread of this dissertation attempts to build decision-making systems using social media data.
The results of the proposed dissertation emphasize the importance of considering multiple data types while interpreting the content shared on OSNs. They highlight the unique ways in which the data and the extracted patterns from text-based platforms or visual-based platforms complement and contrast in terms of their content. The proposed research demonstrated that, in many ways, the results obtained by focusing on either only text or only visual elements of content shared online could lead to biased insights. On the other hand, it also shows the power of a sequential set of patterns that have some sort of precedence relationships and collaboration between humans and automated planners.
A large percentage of posts shared online are in an unrestricted natural language format that is meant for human consumption. One of the demanding problems in this context is to leverage and develop approaches to automatically extract important insights from this incessant massive data pool. Efforts in this direction emphasize mining or extracting the wealth of latent information in the data from multiple OSNs independently. The first thread of this dissertation focuses on analytics to investigate the differentiated content-sharing behavior of individuals. The second thread of this dissertation attempts to build decision-making systems using social media data.
The results of the proposed dissertation emphasize the importance of considering multiple data types while interpreting the content shared on OSNs. They highlight the unique ways in which the data and the extracted patterns from text-based platforms or visual-based platforms complement and contrast in terms of their content. The proposed research demonstrated that, in many ways, the results obtained by focusing on either only text or only visual elements of content shared online could lead to biased insights. On the other hand, it also shows the power of a sequential set of patterns that have some sort of precedence relationships and collaboration between humans and automated planners.
ContributorsManikonda, Lydia (Author) / Kambhampati, Subbarao (Thesis advisor) / Liu, Huan (Committee member) / Li, Baoxin (Committee member) / De Choudhury, Munmun (Committee member) / Kamar, Ece (Committee member) / Arizona State University (Publisher)
Created2019
Description
One of the most remarkable outcomes resulting from the evolution of the web into Web 2.0, has been the propelling of blogging into a widely adopted and globally accepted phenomenon. While the unprecedented growth of the Blogosphere has added diversity and enriched the media, it has also added complexity. To cope with the relentless expansion, many enthusiastic bloggers have embarked on voluntarily writing, tagging, labeling, and cataloguing their posts in hopes of reaching the widest possible audience. Unbeknown to them, this reaching-for-others process triggers the generation of a new kind of collective wisdom, a result of shared collaboration, and the exchange of ideas, purpose, and objectives, through the formation of associations, links, and relations. Mastering an understanding of the Blogosphere can greatly help facilitate the needs of the ever growing number of these users, as well as producers, service providers, and advertisers into facilitation of the categorization and navigation of this vast environment. This work explores a novel method to leverage the collective wisdom from the infused label space for blog search and discovery. The work demonstrates that the wisdom space can provide a most unique and desirable framework to which to discover the highly sought after background information that could aid in the building of classifiers. This work incorporates this insight into the construction of a better clustering of blogs which boosts the performance of classifiers for identifying more relevant labels for blogs, and offers a mechanism that can be incorporated into replacing spurious labels and mislabels in a multi-labeled space.
ContributorsGalan, Magdiel F (Author) / Liu, Huan (Thesis advisor) / Davulcu, Hasan (Committee member) / Ye, Jieping (Committee member) / Li, Baoxin (Committee member) / Arizona State University (Publisher)
Created2015