Theses and Dissertations
This collection includes both ASU Theses and Dissertations, submitted by graduate students, and the Barrett, Honors College theses submitted by undergraduate students.
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- Creators: Jiao, Yang
Description
Collective cell migration in the 3D fibrous extracellular matrix (ECM) is crucial to many physiological and pathological processes such as tissue regeneration, immune response and cancer progression. A migrating cell also generates active pulling forces, which are transmitted to the ECM fibers via focal adhesion complexes. Such active forces consistently remodel the local ECM (e.g., by re-orienting the collagen fibers, forming fiber bundles and increasing the local stiffness of ECM), leading to a dynamically evolving force network in the system that in turn regulates the collective migration of cells.
In this work, this novel mechanotaxis mechanism is investigated, i.e., the role of the ECM mediated active cellular force propagation in coordinating collective cell migration via computational modeling and simulations. The work mainly includes two components: (i) microstructure and micromechanics modeling of cellularized ECM (collagen) networks and (ii) modeling collective cell migration and self-organization in 3D ECM. For ECM modeling, a procedure for generating realizations of highly heterogeneous 3D collagen networks with prescribed microstructural statistics via stochastic optimization is devised. Analysis shows that oriented fibers can significantly enhance long-range force transmission in the network. For modeling collective migratory behaviors of the cells, a minimal active-particle-on-network (APN) model is developed, in which reveals a dynamic transition in the system as the particle number density ρ increases beyond a critical value ρc, from an absorbing state in which the particles segregate into small isolated stationary clusters, to a dynamic state in which the majority of the particles join in a single large cluster undergone constant dynamic reorganization. The results, which are consistent with independent experimental results, suggest a robust mechanism based on ECM-mediated mechanical coupling for collective cell behaviors in 3D ECM.
For the future plan, further substantiate the minimal cell migration model by incorporating more detailed cell-ECM interactions and relevant sub-cellular mechanisms is needed, as well as further investigation of the effects of fiber alignment, ECM mechanical properties and externally applied mechanical cues on collective migration dynamics.
In this work, this novel mechanotaxis mechanism is investigated, i.e., the role of the ECM mediated active cellular force propagation in coordinating collective cell migration via computational modeling and simulations. The work mainly includes two components: (i) microstructure and micromechanics modeling of cellularized ECM (collagen) networks and (ii) modeling collective cell migration and self-organization in 3D ECM. For ECM modeling, a procedure for generating realizations of highly heterogeneous 3D collagen networks with prescribed microstructural statistics via stochastic optimization is devised. Analysis shows that oriented fibers can significantly enhance long-range force transmission in the network. For modeling collective migratory behaviors of the cells, a minimal active-particle-on-network (APN) model is developed, in which reveals a dynamic transition in the system as the particle number density ρ increases beyond a critical value ρc, from an absorbing state in which the particles segregate into small isolated stationary clusters, to a dynamic state in which the majority of the particles join in a single large cluster undergone constant dynamic reorganization. The results, which are consistent with independent experimental results, suggest a robust mechanism based on ECM-mediated mechanical coupling for collective cell behaviors in 3D ECM.
For the future plan, further substantiate the minimal cell migration model by incorporating more detailed cell-ECM interactions and relevant sub-cellular mechanisms is needed, as well as further investigation of the effects of fiber alignment, ECM mechanical properties and externally applied mechanical cues on collective migration dynamics.
ContributorsNan, Hanqing (Author) / Jiao, Yang (Thesis advisor) / Alford, Terry (Committee member) / Zhuang, Houlong (Committee member) / Arizona State University (Publisher)
Created2019
Description
Advanced material systems refer to materials that are comprised of multiple traditional constituents but complex microstructure morphologies, which lead to their superior properties over conventional materials. This dissertation is motivated by the grand challenge in accelerating the design of advanced material systems through systematic optimization with respect to material microstructures or processing settings. While optimization techniques have mature applications to a large range of engineering systems, their application to material design meets unique challenges due to the high dimensionality of microstructures and the high costs in computing process-structure-property (PSP) mappings. The key to addressing these challenges is the learning of material representations and predictive PSP mappings while managing a small data acquisition budget. This dissertation thus focuses on developing learning mechanisms that leverage context-specific meta-data and physics-based theories. Two research tasks will be conducted: In the first, we develop a statistical generative model that learns to characterize high-dimensional microstructure samples using low-dimensional features. We improve the data efficiency of a variational autoencoder by introducing a morphology loss to the training. We demonstrate that the resultant microstructure generator is morphology-aware when trained on a small set of material samples, and can effectively constrain the microstructure space during material design. In the second task, we investigate an active learning mechanism where new samples are acquired based on their violation to a theory-driven constraint on the physics-based model. We demonstrate using a topology optimization case that while data acquisition through the physics-based model is often expensive (e.g., obtaining microstructures through simulation or optimization processes), the evaluation of the constraint can be far more affordable (e.g., checking whether a solution is optimal or equilibrium). We show that this theory-driven learning algorithm can lead to much improved learning efficiency and generalization performance when such constraints can be derived. The outcomes of this research is a better understanding of how physics knowledge about material systems can be integrated into machine learning frameworks, in order to achieve more cost-effective and reliable learning of material representations and predictive models, which are essential to accelerate computational material design.
ContributorsCang, Ruijin (Author) / Ren, Yi (Thesis advisor) / Liu, Yongming (Committee member) / Jiao, Yang (Committee member) / Nian, Qiong (Committee member) / Zhuang, Houlong (Committee member) / Arizona State University (Publisher)
Created2018
Description
Disordered many-body systems are ubiquitous in condensed matter physics, materials science and biological systems. Examples include amorphous and glassy states of matter, granular materials, and tissues composed of packings of cells in the extra-cellular matrix (ECM). Understanding the collective emergent properties in these systems is crucial to improving the capability for controlling, engineering and optimizing their behaviors, yet it is extremely challenging due to their complexity and disordered nature. The main theme of the thesis is to address this challenge by characterizing and understanding a variety of disordered many-body systems via unique statistical geometrical and topological tools and the state-of-the-art simulation methods. Two major topics of the thesis are modeling ECM-mediated multicellular dynamics and understanding hyperuniformity in 2D material systems. Collective migration is an important mode of cell movement for several biological processes, and it has been the focus of a large number of studies over the past decades. Hyperuniform (HU) state is a critical state in a many-particle system, an exotic property of condensed matter discovered recently. The main focus of this thesis is to study the mechanisms underlying collective cell migration behaviors by developing theoretical/phenomenological models that capture the features of ECM-mediated mechanical communications in vitro and investigate general conditions that can be imposed on hyperuniformity-preserving and hyperuniformity-generating operations, as well as to understand how various novel transport physical properties arise from the unique hyperuniform long-range correlations.
ContributorsZheng, Yu (Author) / Jiao, Yang (Thesis advisor) / Zhuang, Houlong (Committee member) / Beckstein, Oliver (Committee member) / Ros, Robert (Committee member) / Arizona State University (Publisher)
Created2022
Description
Computational materials is a field that utilizes modeling, simulations, and technology to study how materials behave. This honors thesis is a presentation discussing computational materials, our study of packing theory using the Monte Carlo (MC), and how our research can be related to real materials we use.
ContributorsVidallon, Justine Ilyssa (Author) / Jiao, Yang (Thesis director) / Zhuang, Houlong (Committee member) / Barrett, The Honors College (Contributor) / Materials Science and Engineering Program (Contributor)
Created2023-05
Description
Phase-field (PF) models are one of the most powerful tools to simulate microstructural evolution in metallic materials, polymers, and ceramics. However, existing PF approaches rely on rigorous mathematical model development, sophisticated numerical schemes, and high-performance computing for accuracy. Although recently developed surrogate microstructure models employ deep-learning techniques and reconstruction of microstructures from lower-dimensional data, their accuracy is fairly limited as spatio-temporal information is lost in the pursuit of dimensional reduction. Given these limitations, a novel data-driven emulator (DDE) for extrapolation prediction of microstructural evolution is presented, which combines an image-based convolutional and recurrent neural network (CRNN) with tensor decomposition, while leveraging previously obtained PF datasets for training. To assess the robustness of DDE, the emulation sequence and the scaling behavior with phase-field simulations for several noisy initial states are compared. In conclusion, the effectiveness of the microstructure emulation technique is explored in the context of accelerating runtime, along with an emphasis on its trade-off with accuracy.Meanwhile, an interpolation DDE has also been tested, which is based on obtaining
a low-dimensional representation of the microstructures via tensor decomposition and subsequently predicting the microstructure evolution in the low-dimensional space using Gaussian process regression (GPR). Once the microstructure predictions are obtained in the low-dimensional space, a hybrid input-output phase retrieval algorithm will be employed to reconstruct the microstructures. As proof of concept, the results on microstructure prediction for spinodal decomposition are presented, although the method itself is agnostic of the material parameters. Results show that GPR-based DDE model are able to predict microstructure evolution sequences that closely resemble the true microstructures (average normalized mean square of 6.78 × 10−7) at time scales half of that employed in obtaining training data. This data-driven
microstructure emulator opens new avenues to predict the microstructural evolution by leveraging phase-field simulations and physical experimentation where the time resolution is often quite large due to limited resources and physical constraints, such as the phase coarsening experiments previously performed in microgravity.
Future work will also be discussed and demonstrate the intended utilization of these two approaches for 3D microstructure prediction through their combined application.
ContributorsWu, Peichen (Author) / Ankit, Kumar (Thesis advisor) / Iquebal, Ashif (Committee member) / Jiao, Yang (Committee member) / Zhuang, Houlong (Committee member) / Arizona State University (Publisher)
Created2024
Description
How to effectively and accurately describe, character and quantify the microstructure of the heterogeneous material and its 4D evolution process with time suffered from external stimuli or provocations is very difficult and challenging, but it’s significant and crucial for its performance prediction, processing, optimization and design. The goal of this research is to overcome these challenges by developing a series of novel hierarchical statistical microstructure descriptors called “n-point polytope functions” which is as known as Pn functions to quantify heterogeneous material’s microstructure and creating Pn functions related quantification methods which are Omega Metric and Differential Omega Metric to analyze its 4D processing.In this dissertation, a series of powerful programming tools are used to demonstrate that Pn functions can be used up to n=8 for chaotically scattered images which can hardly be distinguished by our naked eyes in chapter 3 to find or compare the potential configuration feature of structure such as symmetry or polygon geometry relation between the different targets when target’s multi-modal imaging is provided. These n-point statistic results calculated from Pn functions for features of interest in the microstructure can efficiently decompose the structural hidden features into a set of “polytope basis” to provide a concise, explainable, expressive, universal and efficient quantifying manner.
In Chapter 4, the Pn functions can also be incorporated into material reconstruction algorithms readily for fast virtualizing 3D microstructure regeneration and also allowing instant material property prediction via analytical structure-property mappings for material design.
In Chapter 5, Omega Metric and Differential Omega Metric are further created and used to provide a time-dependent reduced-dimension metric to analyze the 4D evaluation processing instead of using Pn functions directly because these 2 simplified methods can provide undistorted results to be easily compared. The real case of vapor-deposition alloy films analysis are implemented in this dissertation to demonstrate that One can use these methods to predict or optimize the design for 4D evolution of heterogeneous material.
The advantages of the all quantification methods in this dissertation can let us economically and efficiently quantify, design, predict the microstructure and 4D evolution of the heterogeneous material in various fields.
ContributorsCHEN, PEI-EN (Author) / Jiao, Yang (Thesis advisor) / Ren, Yi (Thesis advisor) / Liu, Yongming (Committee member) / Zhuang, Houlong (Committee member) / Nian, Qiong (Committee member) / Arizona State University (Publisher)
Created2021
Description
2D materials with reduced symmetry have gained great interest in the past decade due to the arising quantum properties introduced by the structural asymmetry. A particular example is called 2D Janus materials. Named after Roman god Janus with two faces, Janus materials have different chemical compositions on the two sides of materials, leading to a structure with broken mirror symmetry. Electronegativity difference of the facial elements induces a built-in polarization field pointing out of the plane, which has driven a lot of theory predictions on Rashba splitting, high- temperature ferromagnetism, Skyrmion formation, and so on. Previously reported experimental synthesis of Janus 2D materials relies on high-temperature processing, which limits the crystallinity of as produced 2D layers. In this dissertation, I present a room temperature selective epitaxial atomic re- placement (SEAR) method to convert CVD-grown transition metal dichalcogenides (TMDs) into a Janus structure. Chemically reactive H2 plasma is used to selectively etch off the top layer of chalcogen atoms and the introduction of replacement chalco- gen source in-situ allows for the achievement of Janus structures in one step at room temperature. It is confirmed that the produced Janus monolayers possess high crys- tallinity and good excitonic properties. Moving forward, I show the fabrication of lateral and vertical heterostructures of Janus materials, which are predicted to show exotic properties because of the intrinsic polarization field. To efficiently screen other kinds of interesting Janus structures, a new plasma chamber is designed to allow in-situ optical measurement on the target monolayer during the SEAR process. Successful conversion is seen on mechanically exfoliated MoSe2 and WSe2, and insights into reaction kinetics are gain from Raman spectra evolution. Using the monitoring ability, Janus SNbSe is synthesized for the first time. It’s also demonstrated that the overall crystallinity of as produced Janus monolayer
SWSe and SMoSe are correlated with the source of monolayer TMDs.
Overall, the synthesis of the Janus monolayers using the described method paves the way to the production of highly crystalline Janus materials, and with the in-situ monitoring ability, a deeper understanding of the mechanism is reached. This will accelerate future exploration of other Janus materials synthesis, and confirmation and discovery of their exciting quantum properties.
ContributorsQin, Ying (Author) / Tongay, Sefaattin (Thesis advisor) / Zhuang, Houlong (Committee member) / Jiao, Yang (Committee member) / Arizona State University (Publisher)
Created2021
Description
Special thermal interface materials are required for connecting devices that operate at high temperatures up to 300°C. Because devices used in power electronics, such as GaN, SiC, and other wide bandgap semiconductors, can reach very high temperatures (beyond 250°C), a high melting point, and high thermal & electrical conductivity are required for the thermal interface material. Traditional solder materials for packaging cannot be used for these applications as they do not meet these requirements. Sintered nano-silver is a good candidate on account of its high thermal and electrical conductivity and very high melting point. The high temperature operating conditions of these devices lead to very high thermomechanical stresses that can adversely affect performance and also lead to failure. A number of these devices are mission critical and, therefore, there is a need for very high reliability. Thus, computational and nondestructive techniques and design methodology are needed to determine, characterize, and design the packages. Actual thermal cycling tests can be very expensive and time consuming. It is difficult to build test vehicles in the lab that are very close to the production level quality and therefore making comparisons or making predictions becomes a very difficult exercise. Virtual testing using a Finite Element Analysis (FEA) technique can serve as a good alternative. In this project, finite element analysis is carried out to help achieve this objective. A baseline linear FEA is performed to determine the nature and magnitude of stresses and strains that occur during the sintering step. A nonlinear coupled thermal and mechanical analysis is conducted for the sintering step to study the behavior more accurately and in greater detail. Damage and fatigue analysis are carried out for multiple thermal cycling conditions. The results are compared with the actual results from a prior study. A process flow chart outlining the FEA modeling process is developed as a template for the future work. A Coffin-Manson type relationship is developed to help determine the accelerated aging conditions and predict life for different service conditions.
ContributorsAmla, Tarun (Author) / Chawla, Nikhilesh (Thesis advisor) / Jiao, Yang (Committee member) / Liu, Yongming (Committee member) / Zhuang, Houlong (Committee member) / Jiang, Hanqing (Committee member) / Arizona State University (Publisher)
Created2020
Description
In the age of 5th and upcoming 6th generation fighter aircraft one key proponent of these impressive machines is the inclusion of stealth. This inclusion is demonstrated by thoughtful design pertaining to the shape of the aircraft and rigorous material selection. Both criteria aim to minimize the radar cross section of these aircraft over a wide bandwidth of frequencies corresponding to an ever-evolving field of radar technology. Stealth is both an offensive and defensive capability meaning that service men and women depend on this feature to carry out their missions, and to return home safely. The goal of this paper is to introduce a novel method to designing disordered two-phase composites with desired electromagnetic properties. This task is accomplished by employing the spatial point correlation function, specifically at the two-point level. Effective at describing the dispersion of phases within a two-phase system, the two-point correlation function serves as a statistical function that becomes a realizable target for heterogeneous composites. Simulated annealing is exercised to reconstruct two-phase composite microstructures that initially do not match their target function, followed by two separate experiments aimed at studying the impact of the provided inputs on its outcome. Once conditions for reconstructing highly accurate microstructures are identified, modifications are made to the target function to extract and compare dielectric constants associated with each microstructure. Both the real and imaginary components, which respectively affect wave propagation and attenuation, of the dielectric constants are plotted to illustrate their behavior with increasing wavenumber. Conclusions suggest that favorable values of the complex dielectric constant can be reverse-engineered via careful consideration of the two-point correlation function. Subsequently, corresponding microstructures of the composite can be simulated and then produced through 3-D printing for testing and practical applications.
ContributorsPlantz, Alex Chadewick (Author) / Jiao, Yang (Thesis advisor) / Zhuang, Houlong (Committee member) / Yang, Sui (Committee member) / Arizona State University (Publisher)
Created2024