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The context in which many self-governed commons systems operate will likely be significantly altered as globalization processes play out over the next few decades. Such dramatic changes will induce some systems to fail and subsequently to be transformed, rather than merely adapt. Despite this possibility, research on globalization-induced transformations of

The context in which many self-governed commons systems operate will likely be significantly altered as globalization processes play out over the next few decades. Such dramatic changes will induce some systems to fail and subsequently to be transformed, rather than merely adapt. Despite this possibility, research on globalization-induced transformations of social-ecological systems (SESs) is still underdeveloped. We seek to help fill this gap by exploring some patterns of transformation in SESs and the question of what factors help explain the persistence of cooperation in the use of common-pool resources through transformative change. Through the analysis of 89 forest commons in South Korea that experienced such transformations, we found that there are two broad types of transformation, cooperative and noncooperative. We also found that two system-level properties, transaction costs associated group size and network diversity, may affect the direction of transformation. SESs with smaller group sizes and higher network diversity may better organize cooperative transformations when the existing system becomes untenable.

ContributorsYu, David (Author) / Anderies, John (Author) / Lee, Dowon (Author) / Perez, Irene (Author) / Julie Ann Wrigley Global Institute of Sustainability (Contributor)
Created2013-11-30
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Description

Age-related differences in susceptibility to infectious disease are known from a wide variety of plant and animal taxonomic groups. For example, the immature immune systems of young vertebrates, along with limited prior exposure to pathogens and behavioral factors, can place juveniles at greater risk of acquiring and succumbing to a

Age-related differences in susceptibility to infectious disease are known from a wide variety of plant and animal taxonomic groups. For example, the immature immune systems of young vertebrates, along with limited prior exposure to pathogens and behavioral factors, can place juveniles at greater risk of acquiring and succumbing to a pathogen. We studied the ontogenetic susceptibility of terrestrial direct-developing frogs (Eleutherodactylus coqui) to the fungal pathogen, Batrachochytrium dendrobatidis (Bd), which is responsible for the decline of amphibian species worldwide. By exposing juvenile and adult frogs to the same dose and strain of Bd, we uncovered ontogenetic differences in susceptibility. Froglets exposed to the pathogen had significantly lower survival rates compared with control froglets, while adult frogs largely cleared infection and had survival rates indistinguishable from control frogs, even when exposed to a much higher dose of Bd. The high disease-induced mortality rate of juveniles may explain ongoing population declines in eastern Puerto Rico, where Bd is endemic and juveniles experience higher prevalence and infection intensity compared to adults. Our results have important implications for understanding and modeling the decline, possibly to extinction, of amphibian populations and species.

ContributorsLanghammer, Penny (Author) / Burrowes, Patricia A. (Author) / Lips, Karen R. (Author) / Bryant, Anna B. (Author) / Collins, James (Author) / College of Liberal Arts and Sciences (Contributor)
Created2014-07-01
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Description

In situ multianvil press (MAP) studies have reported that the depth and the Clapeyron slope of the postspinel boundary are significantly less than those of the 660 km discontinuity inferred from seismic studies. These results have raised questions about whether the postspinel transition is associated with the discontinuity. We determined

In situ multianvil press (MAP) studies have reported that the depth and the Clapeyron slope of the postspinel boundary are significantly less than those of the 660 km discontinuity inferred from seismic studies. These results have raised questions about whether the postspinel transition is associated with the discontinuity. We determined the postspinel transition in pyrolitic compositions in the laser-heated diamond anvil cell (LHDAC) combined with in situ synchrotron X-ray diffraction. The Clapeyron slope was determined to be −2.5 ± 0.4MPa/K and did not vary significantly with compositions and used pressure scales. Using Pt scales, our data indicate that the postspinel transition occurs in pyrolitic compositions at 23.6–24.5GPa (1850K). The transition pressure and slope are consistent with the depth and topography of the 660 km discontinuity. Our data reveal that inaccuracy in pressure scales alone cannot explain the discrepancy and technical differences between MAP and LHDAC contribute significantly to the discrepancy.

ContributorsYe, Yu (Author) / Gu, Chen (Author) / Shim, Sang-Heon (Author) / Meng, Yue (Author) / Prakapenka, Vitali (Author) / College of Liberal Arts and Sciences (Contributor)
Created2014-06-16
Description

The emergence of the disease chytridiomycosis caused by the chytrid fungus Batrachochytrium dendrobatidis (Bd) has been implicated in dramatic global amphibian declines. Although many species have undergone catastrophic declines and/or extinctions, others appear to be unaffected or persist at reduced frequencies after Bd outbreaks. The reasons behind this variance in

The emergence of the disease chytridiomycosis caused by the chytrid fungus Batrachochytrium dendrobatidis (Bd) has been implicated in dramatic global amphibian declines. Although many species have undergone catastrophic declines and/or extinctions, others appear to be unaffected or persist at reduced frequencies after Bd outbreaks. The reasons behind this variance in disease outcomes are poorly understood: differences in host immune responses have been proposed, yet previous studies suggest a lack of robust immune responses to Bd in susceptible species. Here, we sequenced transcriptomes from clutch-mates of a highly susceptible amphibian, Atelopus zeteki, with different infection histories. We found significant changes in expression of numerous genes involved in innate and inflammatory responses in infected frogs despite high susceptibility to chytridiomycosis.

We show evidence of acquired immune responses generated against Bd, including increased expression of immunoglobulins and major histocompatibility complex genes. In addition, fungal-killing genes had significantly greater expression in frogs previously exposed to Bd compared with Bd-naïve frogs, including chitinase and serine-type proteases. However, our results appear to confirm recent in vitro evidence of immune suppression by Bd, demonstrated by decreased expression of lymphocyte genes in the spleen of infected compared with control frogs. We propose susceptibility to chytridiomycosis is not due to lack of Bd-specific immune responses but instead is caused by failure of those responses to be effective. Ineffective immune pathway activation and timing of antibody production are discussed as potential mechanisms. However, in light of our findings, suppression of key immune responses by Bd is likely an important factor in the lethality of this fungus.

ContributorsEllison, Amy R. (Author) / Savage, Anna E. (Author) / DiRenzo, Grace V. (Author) / Langhammer, Penny (Author) / Lips, Karen R. (Author) / Zamudio, Kelly R. (Author) / College of Liberal Arts and Sciences (Contributor)
Created2014-07-01
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Description

Consider tuples (K1,…,Kr) of separable algebras over a common local or global number field F F, with the Ki related to each other by specified resolvent constructions. Under the assumption that all ramification is tame, simple group-theoretic calculations give best possible divisibility relations among the discriminants of Ki∕F. We show

Consider tuples (K1,…,Kr) of separable algebras over a common local or global number field F F, with the Ki related to each other by specified resolvent constructions. Under the assumption that all ramification is tame, simple group-theoretic calculations give best possible divisibility relations among the discriminants of Ki∕F. We show that for many resolvent constructions, these divisibility relations continue to hold even in the presence of wild ramification.

ContributorsJones, John (Author) / Roberts, David P. (Author) / College of Liberal Arts and Sciences (Contributor)
Created2013-11-30
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Description

Nonuniform Fourier data are routinely collected in applications such as magnetic resonance imaging, synthetic aperture radar, and synthetic imaging in radio astronomy. To acquire a fast reconstruction that does not require an online inverse process, the nonuniform fast Fourier transform (NFFT), also called convolutional gridding, is frequently employed. While various

Nonuniform Fourier data are routinely collected in applications such as magnetic resonance imaging, synthetic aperture radar, and synthetic imaging in radio astronomy. To acquire a fast reconstruction that does not require an online inverse process, the nonuniform fast Fourier transform (NFFT), also called convolutional gridding, is frequently employed. While various investigations have led to improvements in accuracy, efficiency, and robustness of the NFFT, not much attention has been paid to the fundamental analysis of the scheme, and in particular its convergence properties. This paper analyzes the convergence of the NFFT by casting it as a Fourier frame approximation. In so doing, we are able to design parameters for the method that satisfy conditions for numerical convergence. Our so-called frame theoretic convolutional gridding algorithm can also be applied to detect features (such as edges) from nonuniform Fourier samples of piecewise smooth functions.

ContributorsGelb, Anne (Author) / Song, Guohui (Author) / College of Liberal Arts and Sciences (Contributor)
Created2013-11-30
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Description

A globally integrated carbon observation and analysis system is needed to improve the fundamental understanding of the global carbon cycle, to improve our ability to project future changes, and to verify the effectiveness of policies aiming to reduce greenhouse gas emissions and increase carbon sequestration. Building an integrated carbon observation

A globally integrated carbon observation and analysis system is needed to improve the fundamental understanding of the global carbon cycle, to improve our ability to project future changes, and to verify the effectiveness of policies aiming to reduce greenhouse gas emissions and increase carbon sequestration. Building an integrated carbon observation system requires transformational advances from the existing sparse, exploratory framework towards a dense, robust, and sustained system in all components: anthropogenic emissions, the atmosphere, the ocean, and the terrestrial biosphere. The paper is addressed to scientists, policymakers, and funding agencies who need to have a global picture of the current state of the (diverse) carbon observations.

We identify the current state of carbon observations, and the needs and notional requirements for a global integrated carbon observation system that can be built in the next decade. A key conclusion is the substantial expansion of the ground-based observation networks required to reach the high spatial resolution for CO2 and CH4 fluxes, and for carbon stocks for addressing policy-relevant objectives, and attributing flux changes to underlying processes in each region. In order to establish flux and stock diagnostics over areas such as the southern oceans, tropical forests, and the Arctic, in situ observations will have to be complemented with remote-sensing measurements. Remote sensing offers the advantage of dense spatial coverage and frequent revisit. A key challenge is to bring remote-sensing measurements to a level of long-term consistency and accuracy so that they can be efficiently combined in models to reduce uncertainties, in synergy with ground-based data.

Bringing tight observational constraints on fossil fuel and land use change emissions will be the biggest challenge for deployment of a policy-relevant integrated carbon observation system. This will require in situ and remotely sensed data at much higher resolution and density than currently achieved for natural fluxes, although over a small land area (cities, industrial sites, power plants), as well as the inclusion of fossil fuel CO2 proxy measurements such as radiocarbon in CO2 and carbon-fuel combustion tracers. Additionally, a policy-relevant carbon monitoring system should also provide mechanisms for reconciling regional top-down (atmosphere-based) and bottom-up (surface-based) flux estimates across the range of spatial and temporal scales relevant to mitigation policies. In addition, uncertainties for each observation data-stream should be assessed. The success of the system will rely on long-term commitments to monitoring, on improved international collaboration to fill gaps in the current observations, on sustained efforts to improve access to the different data streams and make databases interoperable, and on the calibration of each component of the system to agreed-upon international scales.

ContributorsCiais, P. (Author) / Dolman, A. J. (Author) / Bombelli, A. (Author) / Duren, R. (Author) / Peregon, A. (Author) / Rayner, P. J. (Author) / Miller, C. (Author) / Gobron, N. (Author) / Kinderman, G. (Author) / Marland, G. (Author) / Gruber, N. (Author) / Chevallier, F. (Author) / Andres, R. J. (Author) / Balsamo, G. (Author) / Bopp, L. (Author) / Breon, F. -M. (Author) / Broquet, G. (Author) / Dargaville, R. (Author) / Battin, T. J. (Author) / Borges, A. (Author) / Bovensmann, H. (Author) / Buchwitz, M. (Author) / Butler, J. (Author) / Canadell, J. G. (Author) / Cook, R. B. (Author) / DeFries, R. (Author) / Engelen, R. (Author) / Gurney, Kevin (Author) / Heinze, C. (Author) / Heimann, M. (Author) / Held, A. (Author) / Henry, M. (Author) / Law, B. (Author) / Luyssaert, S. (Author) / Miller, J. (Author) / Moriyama, T. (Author) / Moulin, C. (Author) / Myneni, R. (Author) / College of Liberal Arts and Sciences (Contributor)
Created2013-11-30
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Description

Altered thermal regimes under climate change may influence host-parasite interactions and invasive species, both potentially impacting valuable ecosystem services. There is considerable interest in how parasite life cycle rates, growth, and impacts on hosts will change under altered environmental temperatures. Likewise, transformed thermal regimes may reduce natural resistance and barriers

Altered thermal regimes under climate change may influence host-parasite interactions and invasive species, both potentially impacting valuable ecosystem services. There is considerable interest in how parasite life cycle rates, growth, and impacts on hosts will change under altered environmental temperatures. Likewise, transformed thermal regimes may reduce natural resistance and barriers preventing establishment of invasive species or alter the range and impacts of established exotic species. The Laurentian Great Lakes are some of the most invaded ecosystems and have been profoundly shaped by exotic species. Invasion by the parasitic sea lamprey (Petromyzon marinus) contributed to major declines in many Great Lakes fish populations. In Lake Superior, substantial progress has been made towards controlling invasive sea lamprey and rehabilitating native fish populations. Surface water temperatures in Lake Superior have been increasing rapidly since 1980 presenting a new challenge for management.

Here we test how thermal changes in Lake Superior have impacted the feeding and growth of the parasitic sea lamprey. Sea lamprey have increased in size corresponding with longer durations of thermal habitat (i.e., longer growing seasons) for their preferred hosts. To compare regional differences in sea lamprey feeding and growth rates, we used a bioenergetics model with temperature estimates from a lake-wide hydrodynamic model hindcast from 1979–2006. Spatial differences in patterns of warming across the lake result in regionally different predictions for increases in sea lamprey feeding rates and size. These predictions were matched by data from adult sea lamprey spawning in streams draining into these different thermal regions. Larger sea lampreys will be more fecund and have increased feeding rates, thus increasing mortality among host fishes. Resource management should consider these climate driven regional impacts when allocating resources to sea lamprey control efforts. Under new and evolving thermal regimes, successful management systems may need to be restructured for changing phenology, growth, and shifts in host-parasite systems towards greater impacts on host populations.

ContributorsCline, Timothy J. (Author) / Kitchell, James F. (Author) / Bennington, Val (Author) / Mckinley, Galen A. (Author) / Moody, Eric (Author) / Weidel, Brian C. (Author) / College of Liberal Arts and Sciences (Contributor)
Created2014-06-01
Description

Fungal hyphae are among the most highly polarized cells. Hyphal polarized growth is supported by tip-directed transport of secretory vesicles, which accumulate temporarily in a stratified manner in an apical vesicle cluster, the Spitzenkörper. The exocyst complex is required for tethering of secretory vesicles to the apical plasma membrane. We

Fungal hyphae are among the most highly polarized cells. Hyphal polarized growth is supported by tip-directed transport of secretory vesicles, which accumulate temporarily in a stratified manner in an apical vesicle cluster, the Spitzenkörper. The exocyst complex is required for tethering of secretory vesicles to the apical plasma membrane. We determined that the presence of an octameric exocyst complex is required for the formation of a functional Spitzenkörper and maintenance of regular hyphal growth in Neurospora crassa. Two distinct localization patterns of exocyst subunits at the hyphal tip suggest the dynamic formation of two assemblies. The EXO-70/EXO-84 subunits are found at the peripheral part of the Spitzenkörper, which partially coincides with the outer macrovesicular layer, whereas exocyst components SEC-5, -6, -8, and -15 form a delimited crescent at the apical plasma membrane. Localization of SEC-6 and EXO-70 to the plasma membrane and the Spitzenkörper, respectively, depends on actin and microtubule cytoskeletons. The apical region of exocyst-mediated vesicle fusion, elucidated by the plasma membrane–associated exocyst subunits, indicates the presence of an exocytotic gradient with a tip-high maximum that dissipates gradually toward the subapex, confirming the earlier predictions of the vesicle supply center model for hyphal morphogenesis.

ContributorsRiquelme, Meritxell (Author) / Bredeweg, Erin L. (Author) / Callejas-Negrete, Olga (Author) / Roberson, Robert (Author) / Ludwig, Sarah (Author) / Beltran-Aguilar, Alejandro (Author) / Seiler, Stephan (Author) / Novick, Peter (Author) / Freitag, Michael (Author) / College of Liberal Arts and Sciences (Contributor)
Created2014-04-15
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Description

Cyber-taxonomy of name usage has focused primarily on producing authoritative lists of names or cross-linking names and data across disparate databases. A feature missing from much of this work is the recording and analysis of the context in which a name was used—context which can be critical for understanding not

Cyber-taxonomy of name usage has focused primarily on producing authoritative lists of names or cross-linking names and data across disparate databases. A feature missing from much of this work is the recording and analysis of the context in which a name was used—context which can be critical for understanding not only what name an author used, but to which currently recognized species they actually refer. An experiment on recording contextual information associated with name usage was conducted for the fiddler crabs (genus Uca). Data from approximately one quarter of all publications that mention fiddler crabs, including 95% of those published prior to 1924 and 67% of those published prior to 1976, have currently been recorded in a database. Approaches and difficulties in recording and analyzing the context of name use are discussed. These results are not meant to be a full solution, rather to highlight problems which have not been previously investigated and may act as a springboard for broader approaches and discussion. Some data on the accessibility of the literature, including in particular electronic forms of publication, are also presented. The resulting data has been integrated for general browsing into the website http://www.fiddlercrab.info; the raw data and code used to construct the website is available at https://github.com/msrosenberg/fiddlercrab.info.

ContributorsRosenberg, Michael (Author) / College of Liberal Arts and Sciences (Contributor)
Created2014-07-08