Matching Items (124)
Description
Solid oxide fuel cells have become a promising candidate in the development of high-density clean energy sources for the rapidly increasing demands in energy and global sustainability. In order to understand more about solid oxide fuel cells, the important step is to understand how to model heterogeneous materials. Heterogeneous materials are abundant in nature and also created in various processes. The diverse properties exhibited by these materials result from their complex microstructures, which also make it hard to model the material. Microstructure modeling and reconstruction on a meso-scale level is needed in order to produce heterogeneous models without having to shave and image every slice of the physical material, which is a destructive and irreversible process. Yeong and Torquato [1] introduced a stochastic optimization technique that enables the generation of a model of the material with the use of correlation functions. Spatial correlation functions of each of the various phases within the heterogeneous structure are collected from a two-dimensional micrograph representing a slice of a solid oxide fuel cell through computational means. The assumption is that two-dimensional images contain key structural information representative of the associated full three-dimensional microstructure. The collected spatial correlation functions, a combination of one-point and two-point correlation functions are then outputted and are representative of the material. In the reconstruction process, the characteristic two-point correlation functions is then inputted through a series of computational modeling codes and software to generate a three-dimensional visual model that is statistically similar to that of the original two-dimensional micrograph. Furthermore, parameters of temperature cooling stages and number of pixel exchanges per temperature stage are utilized and altered accordingly to observe which parameters has a higher impact on the reconstruction results. Stochastic optimization techniques to produce three-dimensional visual models from two-dimensional micrographs are therefore a statistically reliable method to understanding heterogeneous materials.
ContributorsPhan, Richard Dylan (Author) / Jiao, Yang (Thesis director) / Ren, Yi (Committee member) / Chemical Engineering Program (Contributor) / Barrett, The Honors College (Contributor)
Created2016-05
Description
Membrane proteins act as sensors, gatekeepers and information carriers in the cell membranes. Functional engineering of these proteins is important for the development of molecular tools for biosensing, therapeutics and as components of artificial cells. However, using protein engineering to modify existing protein structures is challenging due to the limitations of structural changes and difficulty in folding polypeptides into defined protein structures. Recent studies have shown that nanoscale architectures created by DNA nanotechnology can be used to mimic various protein functions, including some membrane proteins. However, mimicking the highly sophisticated structural dynamics of membrane proteins by DNA nanostructures is still in its infancy, mainly due to lack of transmembrane DNA nanostructures that can mimic the dynamic behavior, ubiquitous to membrane proteins. Here, I demonstrate design of dynamic DNA nanostructures to mimic two important class of membrane proteins. First, I describe a DNA nanostructure that inserts through lipid membrane and dynamically reconfigures upon sensing a membrane-enclosed DNA or RNA target, thereby transducing biomolecular information across the lipid membrane similar to G-protein coupled receptors (GPCR’s). I use the non-destructive sensing property of our GPCR-mimetic nanodevice to sense cancer associated micro-RNA biomarkers inside exosomes without the need of RNA extraction and amplification. Second, I demonstrate a fully reversibly gated DNA nanopore that mimics the ligand mediated gating of ion channel proteins. The 20.4 X 20.4 nm-wide channel of the DNA nanopore allows timed delivery of folded proteins across synthetic and biological membranes. These studies represent early examples of dynamic DNA nanostructures in mimicking membrane protein functions. I envision that they will be used in synthetic biology to create artificial cells containing GPCR-like and ion channel-like receptors, in site-specific drug or vaccine delivery and highly sensitive biosensing applications.
ContributorsDey, Swarup (Author) / Yan, Hao (Thesis advisor) / Hariadi, Rizal F (Thesis advisor) / Liu, Yan (Committee member) / Stephanopoulos, Nicholas (Committee member) / Arizona State University (Publisher)
Created2021
Description
With the substantial development of intelligent robots, human-robot interaction (HRI) has become ubiquitous in applications such as collaborative manufacturing, surgical robotic operations, and autonomous driving. In all these applications, a human behavior model, which can provide predictions of human actions, is a helpful reference that helps robots to achieve intelligent interaction with humans. The requirement elicits an essential problem of how to properly model human behavior, especially when individuals are interacting or cooperating with each other. The major objective of this thesis is to utilize the human intention decoding method to help robots enhance their performance while interacting with humans. Preliminary work on integrating human intention estimation with an HRI scenario is shown to demonstrate the benefit. In order to achieve this goal, the research topic is divided into three phases. First, a novel method of an online measure of the human's reliance on the robot, which can be estimated through the intention decoding process from human actions，is described. An experiment that requires human participants to complete an object-moving task with a robot manipulator was conducted under different conditions of distractions. A relationship is discovered between human intention and trust while participants performed a familiar task with no distraction. This finding suggests a relationship between the psychological construct of trust and joint physical coordination, which bridges the human's action to its mental states. Then, a novel human collaborative dynamic model is introduced based on game theory and bounded rationality, which is a novel method to describe human dyadic behavior with the aforementioned theories. The mutual intention decoding process was also considered to inform this model. Through this model, the connection between the mental states of the individuals to their cooperative actions is indicated. A haptic interface is developed with a virtual environment and the experiments are conducted with 30 human subjects. The result suggests the existence of mutual intention decoding during the human dyadic cooperative behaviors. Last, the empirical results show that allowing agents to have empathy in inference, which lets the agents understand that others might have a false understanding of their intentions, can help to achieve correct intention inference. It has been verified that knowledge about vehicle dynamics was also important to correctly infer intentions. A new courteous policy is proposed that bounded the courteous motion using its inferred set of equilibrium motions. A simulation, which is set to reproduce an intersection passing case between an autonomous car and a human driving car, is conducted to demonstrate the benefit of the novel courteous control policy.
ContributorsWang, Yiwei (Author) / Zhang, Wenlong (Thesis advisor) / Berman, Spring (Committee member) / Lee, Hyunglae (Committee member) / Ren, Yi (Committee member) / Yang, Yezhou (Committee member) / Arizona State University (Publisher)
Created2021
Description
In the development of autonomous ground vehicles (AGVs), how to guarantee vehicle lateral stability is one of the most critical aspects. Based on nonlinear vehicle lateral and tire dynamics, new driving requirements of AGVs demand further studies and analyses of vehicle lateral stability control strategies. To achieve comprehensive analyses and stability-guaranteed vehicle lateral driving control, this dissertation presents three main contributions.First, a new method is proposed to estimate and analyze vehicle lateral driving stability regions, which provide a direct and intuitive demonstration for stability control of AGVs. Based on a four-wheel vehicle model and a nonlinear 2D analytical LuGre tire model, a local linearization method is applied to estimate vehicle lateral driving stability regions by analyzing vehicle local stability at each operation point on a phase plane. The obtained stability regions are conservative because both vehicle and tire stability are simultaneously considered. Such a conservative feature is specifically important for characterizing the stability properties of AGVs.
Second, to analyze vehicle stability, two novel features of the estimated vehicle lateral driving stability regions are studied. First, a shifting vector is formulated to explicitly describe the shifting feature of the lateral stability regions with respect to the vehicle steering angles. Second, dynamic margins of the stability regions are formulated and applied to avoid the penetration of vehicle state trajectory with respect to the region boundaries. With these two features, the shiftable stability regions are feasible for real-time stability analysis.
Third, to keep the vehicle states (lateral velocity and yaw rate) always stay in the shiftable stability regions, different control methods are developed and evaluated. Based on different vehicle control configurations, two dynamic sliding mode controllers (SMC) are designed. To better control vehicle stability without suffering chattering issues in SMC, a non-overshooting model predictive control is proposed and applied. To further save computational burden for real-time implementation, time-varying control-dependent invariant sets and time-varying control-dependent barrier functions are proposed and adopted in a stability-guaranteed vehicle control problem.
Finally, to validate the correctness and effectiveness of the proposed theories, definitions, and control methods, illustrative simulations and experimental results are presented and discussed.
ContributorsHuang, Yiwen (Author) / Chen, Yan (Thesis advisor) / Lee, Hyunglae (Committee member) / Ren, Yi (Committee member) / Yong, Sze Zheng (Committee member) / Zhang, Wenlong (Committee member) / Arizona State University (Publisher)
Created2021
Description
In convective heat transfer processes, heat transfer rate increases generally with a large fluid velocity, which leads to complex flow patterns. However, numerically analyzing the complex transport process and conjugated heat transfer requires extensive time and computing resources. Recently, data-driven approach has risen as an alternative method to solve physical problems in a computational efficient manner without necessitating the iterative computations of the governing physical equations. However, the research on data-driven approach for convective heat transfer is still in nascent stage. This study aims to introduce data-driven approaches for modeling heat and mass convection phenomena. As the first step, this research explores a deep learning approach for modeling the internal forced convection heat transfer problems. Conditional generative adversarial networks (cGAN) are trained to predict the solution based on a graphical input describing fluid channel geometries and initial flow conditions. A trained cGAN model rapidly approximates the flow temperature, Nusselt number (Nu) and friction factor (f) of a flow in a heated channel over Reynolds number (Re) ranging from 100 to 27750. The optimized cGAN model exhibited an accuracy up to 97.6% when predicting the local distributions of Nu and f. Next, this research introduces a deep learning based surrogate model for three-dimensional (3D) transient mixed convention in a horizontal channel with a heated bottom surface. Conditional generative adversarial networks (cGAN) are trained to approximate the temperature maps at arbitrary channel locations and time steps. The model is developed for a mixed convection occurring at the Re of 100, Rayleigh number of 3.9E6, and Richardson number of 88.8. The cGAN with the PatchGAN based classifier without the strided convolutions infers the temperature map with the best clarity and accuracy.
Finally, this study investigates how machine learning analyzes the mass transfer in 3D printed fluidic devices. Random forests algorithm is hired to classify the flow images taken from semi-transparent 3D printed tubes. Particularly, this work focuses on laminar-turbulent transition process occurring in a 3D wavy tube and a straight tube visualized by dye injection. The machine learning model automatically classifies experimentally obtained flow images with an accuracy > 0.95.
ContributorsKang, Munku (Author) / Kwon, Beomjin (Thesis advisor) / Phelan, Patrick (Committee member) / Ren, Yi (Committee member) / Rykaczewski, Konrad (Committee member) / Sohn, SungMin (Committee member) / Arizona State University (Publisher)
Created2022
Description
Autonomous systems inevitably must interact with other surrounding systems; thus, algorithms for intention/behavior estimation are of great interest. This thesis dissertation focuses on developing passive and active model discrimination algorithms (PMD and AMD) with applications to set-valued intention identification and fault detection for uncertain/bounded-error dynamical systems. PMD uses the obtained input-output data to invalidate the models, while AMD designs an auxiliary input to assist the discrimination process. First, PMD algorithms are proposed for noisy switched nonlinear systems constrained by metric/signal temporal logic specifications, including systems with lossy data modeled by (m,k)-firm constraints. Specifically, optimization-based algorithms are introduced for analyzing the detectability/distinguishability of models and for ruling out models that are inconsistent with observations at run time. On the other hand, two AMD approaches are designed for noisy switched nonlinear models and piecewise affine inclusion models, which involve bilevel optimization with integer variables/constraints in the inner/lower level. The first approach solves the inner problem using mixed-integer parametric optimization, whose solution is included when solving the outer problem/higher level, while the second approach moves the integer variables/constraints to the outer problem in a manner that retains feasibility and recasts the problem as a tractable mixed-integer linear programming (MILP). Furthermore, AMD algorithms are proposed for noisy discrete-time affine time-invariant systems constrained by disjunctive and coupled safety constraints. To overcome the issues associated with generalized semi-infinite constraints due to state-dependent input constraints and disjunctive safety constraints, several constraint reformulations are proposed to recast the AMD problems as tractable MILPs. Finally, partition-based AMD approaches are proposed for noisy discrete-time affine time-invariant models with model-independent parameters and output measurement that are revealed at run time. Specifically, algorithms with fixed and adaptive partitions are proposed, where the latter improves on the performance of the former by allowing the partitions to be optimized. By partitioning the operation region, the problem is solved offline, and partition trees are constructed which can be used as a `look-up table' to determine the optimal input depending on revealed information at run time.
ContributorsNiu, Ruochen (Author) / Yong, Sze Zheng S.Z. (Thesis advisor) / Berman, Spring (Committee member) / Ren, Yi (Committee member) / Zhang, Wenlong (Committee member) / Zhuang, Houlong (Committee member) / Arizona State University (Publisher)
Created2022
Description
The increasing availability of data and advances in computation have spurred the development of data-driven approaches for modeling complex dynamical systems. These approaches are based on the idea that the underlying structure of a complex system can be discovered from data using mathematical and computational techniques. They also show promise for addressing the challenges of modeling high-dimensional, nonlinear systems with limited data. In this research expository, the state of the art in data-driven approaches for modeling complex dynamical systems is surveyed in a systemic way. First the general formulation of data-driven modeling of dynamical systems is discussed. Then several representative methods in feature engineering and system identification/prediction are reviewed, including recent advances and key challenges.
ContributorsShi, Wenlong (Author) / Ren, Yi (Thesis advisor) / Hong, Qijun (Committee member) / Jiao, Yang (Committee member) / Yang, Yezhou (Committee member) / Arizona State University (Publisher)
Created2022
Description
The need for autonomous cars has never been more vital, and for a vehicle to be completely autonomous, multiple components must work together, one of which is the capacity to park at the end of a mission. This thesis project aims to design and execute an automated parking assist system (APAS). Traditional Automated parking assist systems (APAS) may not be effective in some constrained urban parking environments because of the parking space dimension. The thesis proposes a novel four-wheel steering (4-WS) vehicle for automated parallel parking to overcome this kind of challenge. Then, benefiting from the maneuverability enabled by the 4WS system, the feasible initial parking area is vastly expanded from those for the conventional 2WS vehicles. In addition, the expanded initial area is divided into four areas where different paths are planned correspondingly. In the proposed novel APAS first, a suitable parking space is identified through ultra-sonic sensors, which are mounted around the vehicle, and then depending upon the vehicle's initial position, various compact and smooth parallel parking paths are generated. An optimization function is built to get the smoothest (i.e., the smallest steering angle change and the shortest path) parallel parking path. With the full utilization of the 4WS system, the proposed path planning algorithm can allow a larger initial parking area that can be easily tracked by the 4WS vehicles. The proposed APAS for 4WS vehicles makes the automatic parking process in restricted spaces efficient. To verify the feasibility and effectiveness of the proposed APAS, a 4WS vehicle prototype is applied for validation through both simulation and experiment results.
ContributorsGujarathi, Kaushik Kumar (Author) / Chen, Yan (Thesis advisor) / Yong, Sze Zheng (Committee member) / Ren, Yi (Committee member) / Arizona State University (Publisher)
Created2022
Description
The distribution and transport of mercury in the human body are poorly constrained. For instance, the long-term persistence and intra-individual distribution of mercury in bones from dental amalgams or environmental exposure have not been studied. A robust method validated for accuracy and precision specifically for mercury in human bones would facilitate studies of mercury in anthropological, forensic, and medical studies. I present a highly precise, accurate mercury concentration analytical method targeted to human bone samples. This method uses commercially commonly available and reliable instruments that are not limited to elemental Hg analysis. This method requires significantly lower sample amounts than existing methods because it has a much lower limit of detection compared to the best mercury analyzers on the market and other analytical methods. With the low limit of detection achieved, this mercury concentration protocol is an excellent fit for studies with a limited amount of samples for destructive analysis. I then use this method to analyze the mercury concentration distribution in modern skeletal collections provided by three U.S. anthropological research facilities. Mercury concentration and distribution were analyzed from 35 donors’ skeletons with 18 different skeletal elements (bones) per donor to evaluate both the intra-individual and inter-individual variation in mercury concentration. Considered factors include geological differences in decomposition sites and the presence of dental amalgam filling. Geological differences in decomposition sites did not statistically affect the mercury concentration in the donor’s skeleton. The presence of dental amalgam significantly affected the inter-individual and intra-individual mercury concentration variation in donors’ skeletal samples. Individuals who had dental amalgam had significantly higher mercury concentration in their skeleton compared to individuals who did not have dental amalgam (p-value <0.01). Mercury concentration in the mandible, occipital bone, patella, and proximal phalanx (foot) was significantly affected by the presence of dental amalgam.
ContributorsRen, Yi (Author) / Gordon, Gwyneth GG (Thesis advisor) / Anbar, Ariel AD (Thesis advisor) / Shock, Everett ES (Committee member) / Knudson, Kelly KJ (Committee member) / Arizona State University (Publisher)
Created2022
Description
Originally conceived as a way to scaffold molecules of interest into three-dimensional (3D) crystalline lattices for X ray crystallography, the field of deoxyribonucleic acid (DNA) nanotechnology has dramatically evolved since its inception. The unique properties of DNA nanostructures have promoted their use not only for X ray crystallography, but for a suite of biomedical applications as well. The work presented in this dissertation focuses on both of these exciting applications in the field: 1) Nucleic acid nanostructures as multifunctional drug and vaccine delivery platforms, and 2) 3D DNA crystals for structure elucidation of scaffolded guest molecules.Chapter 1 illustrates how a wide variety of DNA nanostructures have been developed for the delivery of drugs and vaccine components. However, their applications are limited under physiological conditions due to their lack of stability in low salt environments, susceptibility to enzymatic degradation, and tendency for endosomal entrapment. To address these issues, Chapter 2 describes a PEGylated peptide coating molecule was designed to electrostatically adhere to and protect DNA origami nanostructures and to facilitate their cytosolic delivery by peptide-mediated endosomal escape. The development of this molecule will aid in the use of nucleic acid nanostructures for biomedical purposes, such as the delivery of messenger ribonucleic acid (mRNA) vaccine constructs. To this end, Chapter 3 discusses the fabrication of a structured mRNA nanoparticle for more cost-efficient mRNA vaccine manufacture and proposes a multi-epitope mRNA nanostructure vaccine design for targeting human papillomavirus (HPV) type 16-induced head and neck cancers.
DNA nanotechnology was originally envisioned to serve as three-dimensional scaffolds capable of positioning proteins in a rigid array for their structure elucidation by X ray crystallography. Accordingly, Chapter 4 explores design parameters, such as sequence and Holliday junction isomeric forms, for efficient crystallization of 3D DNA lattices. Furthermore, previously published DNA crystal motifs are used to site-specifically position and structurally evaluate minor groove binding molecules with defined occupancies. The results of this study provide significant advancement towards the ultimate goal of the field.
ContributorsHenry, Skylar J.W. (Author) / Stephanopoulos, Nicholas (Thesis advisor) / Anderson, Karen (Thesis advisor) / Blattman, Joseph (Committee member) / Yan, Hao (Committee member) / Arizona State University (Publisher)
Created2023