The global transport and deposition of anthropogenic nitrogen (N) to downwind ecosystems are significant and continue to increase. Indeed, atmospheric deposition can be a significant source of N to many watersheds, including those in remote, unpopulated areas. Bacterial denitrification in lake sediments may ameliorate the effects of N loading by converting nitrate (NO3-) to N2 gas. Denitrification also produces nitrous oxide (N2O), a potent greenhouse gas. The ecological effects of atmospheric N inputs in terrestrial ecosystems and the pelagic zone of lakes have been well documented; however, similar research in lake sediments is lacking. This project investigates the effects N of deposition on denitrification and N2O production in lakes. Atmospheric N inputs might alter the availability of NO3- and other key resources to denitrifiers. Such altered resources could influence denitrification, N2O production, and the abundance of denitrifying bacteria in sediments. The research contrasts these responses in lakes at the ends of gradients of N deposition in Colorado and Norway. Rates of denitrification and N2O production were elevated in the sediments of lakes subject to anthropogenic N inputs. There was no evidence, however, that N deposition has altered sediment resources or the abundance of denitrifiers. Further investigation into the dynamics of nitric oxide, N2O, and N2 during denitrification found no difference between deposition regions. Regardless of atmospheric N inputs, sediments from lakes in both Norway and Colorado possess considerable capacity to remove NO3- by denitrification. Catchment-specific properties may influence the denitrifying community more strongly than the rate of atmospheric N loading. In this regard, sediments appear to be insulated from the effects of N deposition compared to the water column. Lastly, surface water N2O concentrations were greater in high-deposition lakes compared to low-deposition lakes. To understand the potential magnitude of deposition-induced N2O production, the greenhouse gas inventory methodology of Intergovernmental Panel on Climate Change was applied to available datasets. Estimated emissions from lakes are 7-371 Gg N y-1, suggesting that lakes could be an important source of N2O.
diverse range of anaerobic microbes, but its sources and sinks are poorly understood. The overarching goal of my dissertation is to explore abiotic N2O formation and microbial N2O consumption across reducing environments of the early and modern Earth. By combining experiments as well as diffusion and atmospheric modeling, I present evidence that N2O production can be catalyzed on iron mineral surfaces that may have been present in shallow waters of the Archean ocean. Using photochemical models, I showed that tropospheric N2O concentrations close to modern ones (ppb range) were possible before O2 accumulated. In peatlands of the Amazon basin (modern Earth), unexpected abiotic activity became apparent under anoxic conditions. However, care has to be taken to adequately disentangle abiotic from biotic reactions. I identified significant sterilant-induced changes in Fe2+ and dissolved organic matter pools (determined by fluorescence spectroscopy). Among all chemical and physical sterilants tested, γ - irradiation showed the least effect on reactant pools. Targeting geochemically diverse peatlands across Central and South America, I present evidence that coupled abiotic and biotic cycling of N2O could be a widespread phenomenon. Using isotopic tracers in the field, I showed that abiotic N2O fluxes rival biotic ones under in-situ conditions. Moreover, once N2O is produced, it is rapidly consumed by N2O-reducing microbes. Using amplicon sequencing and metagenomics, I demonstrated that this surprising N2O sink potential is associated with diverse bacteria, including the recently discovered clade II that is present in high proportions at Amazonian sites based on nosZ quantities. Finally, to evaluate the impact of nitrogen oxides on methane production in peatlands, I characterized soil nitrite (NO2–) and N2O abundances along soil profiles. I complemented field analyses with molecular work by deploying amplicon-based 16S rRNA and mcrA sequencing. The diversity and activity of soil methanogens was affected by the presence of NO2– and N2O, suggesting that methane emissions could be influenced by N2O cycling dynamics. Overall, my work proposes a key role for N2O in Earth systems across time and a central position in tropical microbial ecosystems.
Global biodiversity is threatened by anthropogenic impacts, as the global population becomes increasingly urbanized. Conservation researchers and practitioners increasingly recognize the potential of cities to support biodiversity and foster human-nature interactions. However, further understanding of social and ecological mechanisms driving change in urban biodiversity over time is needed. In this dissertation, I first synthesized evidence for the urban homogenization hypothesis, which proposes that cities are more similar across space and time than are the natural communities they replace. I found that approaches to testing urban homogenization varied widely, but there is evidence for convergence at regional spatial scales and for some taxa. This work revealed a lack of long-term urban studies, as well as support for social and ecological mechanisms driving homogenization.
Building from this systematic literature review, I tested the effects of a long-term nutrient enrichment experiment in urban and near-urban desert preserves to evaluate indirect urban impacts on natural plant communities over time. Urban preserves and nitrogen-fertilized plots supported fewer annual wildflower species, limiting their effectiveness for biodiversity conservation and nature provisioning for urban residents.
Finally, I conducted research on residential yards in Phoenix, Arizona, to explore the effects of individual management behavior on urban plant community dynamics. Using a front yard vegetation survey repeated at three time points and a paired social survey, I asked, to what extent are yard plant communities dynamic over time, and how do attitudes and parcel characteristics affect native plant landscaping? Front yard woody plant communities experienced high turnover on a decadal scale, indicating that these managed communities are dynamic and capable of change for conservation benefit. Residents held positive attitudes toward native plants, but cultivated few in their yards. Priorities such as desired functional traits, attitudes toward native plants, and household income predicted native plant abundance, while knowledge of native plants did not.
This body of work contributes to the growing understanding of how urban ecosystems change over time in response to local- and city-scale impacts, demonstrating opportunities to engage urban residents and land managers in local conservation action to improve the value of cities for people and biodiversity.
the integrity and configuration of riparian corridors worldwide. Wildlife viability in semi-arid regions depend heavily on the connectivity of riparian corridors, since water is the primary limiting resource. The Madrean Archipelago in northern Mexico and southwestern United States (US) is a biodiversity hotspot that supports imperiled wildlife like jaguar (Panthera onca) and ocelot (Leopardus pardalis). Recent and ongoing infrastructure developments in the historically understudied US-México borderlands region, such as the border wall and expansion of Federal Highway 2, are altering wildlife movement and disconnecting essential habitat.
I used wildlife cameras to assess species occupancy, abundance, and related habitat variables affecting the use of washes as corridors for mammals in semi-arid Los Ojos (LO), a private ranch within a 530 km2 priority conservation area in Sonora, México located south of the border and Federal Highway 2. From October 2018 to April 2019, I deployed 21 wildlife cameras in five different riparian corridors within LO. I used single- season occupancy models and Royal Nichols abundance models to explore the relationship between habitat variables and use of riparian corridors by mammal communities of conservation concern within this region.
Twenty-one mammal species were recorded in the study area, including American black bear (Ursus americanus), white-tailed deer (Odocoileus virginianus) and the first sighting of jaguar (Panthera onca) in this region in 25 years. For the 11 medium- and large-bodied mammals recorded, habitat variables related to perennial river characteristics (distance to river, weekly water, and site width) and remoteness (distance from highway, elevation, and NDVI) were important for occupancy, but the direction of the relationship varied by species. For commonly observed species such as mountain lion (Puma concolor) and white-nosed coati (Nasua narica), topographic variety was highly informative for species abundance. These results highlight the importance of habitat diversity when identifying corridors for future protection to conserve wildlife communities in semi-arid regions. Additionally, this study provides robust evidence in support of mitigation measures (e.g. funnel fencing, over- or under- passes) along Federal Highway 2, and other barriers such as the border wall, to facilitate wildlife connectivity.
Phosphorus (P) is a limiting nutrient in ecosystems and is mainly used as fertilizer to grow food. The demand for P is increasing due to the need for increased food supply to support a growing population. However, P is obtained from phosphate rock, a finite resource that takes millions of years to form. These phosphate rock deposits are found in only a few countries. This uneven distribution of phosphate rock leads to a potential imbalance in socio-economic systems, generating food security pressure due to unaffordability of P fertilizer. Thus, the first P-sustainability concern is a stable supply of affordable P fertilizer for agriculture. In addition, improper management of P from field to fork leaves an open end in the global P cycle that results in widespread water pollution. This eutrophication leads to toxic algal blooms and hypoxic “dead zones”. Thus, the second P-sustainability concern involves P pollution from agriculture and cities. This thesis focuses on P flows in a city (Macau as a case study) and on potential strategies for improvements of sustainable P management in city and agriculture. Chapter 2 showed a P-substance-flow analysis for Macau from 1998-2016. Macau is a city with a unique economy build on tourism. The major P flows into Macau were from food, detergent, and sand (for land reclamation). P recovery from wastewater treatment could enhance Macau’s overall P sustainability if the recovered P could be directed towards replacing mined P used to produce food. Chapters 3 and 4 tested a combination of P sustainability management tactics including recycling P from cities and enhancing P-use efficiency (PUE) in agriculture. Algae and biosolids were used as recycled-P fertilizers, and genetically transformed lettuce was used as the a PUE-enhanced crop. This P sustainable system was compared to the conventional agricultural system using commercial fertilizer and the wild type lettuce. Chapters 3 and 4 showed that trying to combine a PUE-enhancement strategy with P recycling did not work well, although organic fertilizers like algae and biosolids may be more beneficial as part of longer-term agricultural practices. This would be a good area for future research.