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This dissertation investigates the condition of skeletal muscle insulin resistance using bioinformatics and computational biology approaches. Drawing from several studies and numerous data sources, I have attempted to uncover molecular mechanisms at multiple levels. From the detailed atomistic simulations of a single protein, to datamining approaches applied at the systems

This dissertation investigates the condition of skeletal muscle insulin resistance using bioinformatics and computational biology approaches. Drawing from several studies and numerous data sources, I have attempted to uncover molecular mechanisms at multiple levels. From the detailed atomistic simulations of a single protein, to datamining approaches applied at the systems biology level, I provide new targets to explore for the research community. Furthermore I present a new online web resource that unifies various bioinformatics databases to enable discovery of relevant features in 3D protein structures.
ContributorsMielke, Clinton (Author) / Mandarino, Lawrence (Committee member) / LaBaer, Joshua (Committee member) / Magee, D. Mitchell (Committee member) / Dinu, Valentin (Committee member) / Willis, Wayne (Committee member) / Arizona State University (Publisher)
Created2013
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In recent years, biological research and clinical healthcare has been disrupted by the ability to retrieve vast amounts of information pertaining to an organism’s health and biological systems. From increasingly accessible wearables collecting realtime biometric data to cutting-edge high throughput biological sequencing methodologies providing snapshots of an organism’s molecular profile,

In recent years, biological research and clinical healthcare has been disrupted by the ability to retrieve vast amounts of information pertaining to an organism’s health and biological systems. From increasingly accessible wearables collecting realtime biometric data to cutting-edge high throughput biological sequencing methodologies providing snapshots of an organism’s molecular profile, biological data is rapidly increasing in its prevalence. As more biological data continues to be harvested, artificial intelligence and machine learning are well positioned to aid in leveraging this big data for breakthrough scientific outcomes and revolutionized medical care. <br/><br/>The coming decade’s intersection between biology and computational science will be ripe with opportunities to utilize biological big data to advance human health and mitigate disease. Standardization, aggregation and centralization of this biological data will be critical to drawing novel scientific insights that will lead to a more robust understanding of disease etiology and therapeutic avenues. Future development of cheaper, more accessible molecular sensing technology, in conjunction with the emergence of more precise wearables, will pave the road to a truly personalized and preventative healthcare system. However, with these vast opportunities come significant threats. As biological big data advances, privacy and security concerns may hinder society's adoption of these technologies and subsequently dampen the positive impacts this information can have on society. Moreover, the openness of biological data serves as a national security threat given that this data can be used to identify medical vulnerabilities in a population, highlighting the dual-use implications of biological big data. <br/><br/>Additional factors to be considered by academia, private industry, and defense include the ongoing relationship between science and society at-large, as well as the political and social dimensions surrounding the public’s trust in science. Organizations that seek to contribute to the future of biological big data must also remain vigilant to equity, representation and bias in their data sets and data processing techniques. Finally, the positive impacts of biological big data lie on the foundation of responsible innovation, as these emerging technologies do not operate in standalone fashion but rather form a complex ecosystem.

ContributorsDave, Nikhil (Author) / Johnson, Brian David (Thesis director) / Dudley, Sean (Committee member) / Levinson, Rachel (Committee member) / School for the Future of Innovation in Society (Contributor) / School of Life Sciences (Contributor) / Barrett, The Honors College (Contributor)
Created2021-05