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This thesis presents a systematic review of viruses found in the Peromyscus leucopus rodent species in North America. Various viruses cause serious illness in humans through contact with infected rodent urine, droppings, or saliva, or inhalation of dust contaminated with the virus, with Hantavirus pulmonary syndrome (HPS) being the most

This thesis presents a systematic review of viruses found in the Peromyscus leucopus rodent species in North America. Various viruses cause serious illness in humans through contact with infected rodent urine, droppings, or saliva, or inhalation of dust contaminated with the virus, with Hantavirus pulmonary syndrome (HPS) being the most severe manifestation. Therefore, studying their distribution in rodent populations can inform public health interventions to reduce the risk of transmission. Through a literature review and data analysis, this study found that studying the distribution of viruses in rodents can help identify areas where humans may be at higher risk of contracting the virus, inform public health interventions to reduce the risk of HPS transmissions, and better understand the ecology of the virus and its host species, which can, in turn, inform conservation efforts. Furthermore, monitoring the spread of viruses over time and across regions can help us better understand their epidemiology and potential for future outbreaks, which can inform surveillance and response efforts to mitigate the impact of the virus on human and animal health. Overall, this study highlights the importance of interdisciplinary approaches in addressing complex public health and conservation issues and underscores the need for continued research in this area.

ContributorsJain, Tanishq (Author) / Sterner, Beckett (Thesis director) / Upham, Nathan (Committee member) / Barrett, The Honors College (Contributor) / School of Sustainability (Contributor) / School of Life Sciences (Contributor)
Created2023-05
Description

This study highlights the significance of zoonotic diseases, which make up almost 60% of infectious diseases in humans, and their origin from animals. Among mammalian viruses, primates, bats, and rodents have been identified as high-risk carriers. Within the rodent family Cricetidae, the species complex of Peromyscus eremicus, Peromyscus californicus, Peromyscus

This study highlights the significance of zoonotic diseases, which make up almost 60% of infectious diseases in humans, and their origin from animals. Among mammalian viruses, primates, bats, and rodents have been identified as high-risk carriers. Within the rodent family Cricetidae, the species complex of Peromyscus eremicus, Peromyscus californicus, Peromyscus fraterculus, and Osgoodomys banderanus have been found to play a crucial role in disease transmission. These four species are phylogenetically related and share similar physical appearances and ecological niches. They have been identified as carriers of several zoonotic diseases, including Hantavirus, Arenavirus, Yersinia pestis, and Flavivirus, with a history of spread to humans. Despite their implications for public health, many of these species remain understudied. Thus, this study aims to provide a systematic review of the existing literature on these four species to summarize the findings on virus prevalence and distribution. The review shows that sampling efforts have been uneven and recent efforts have been lacking, with potential undiscovered zoonotic diseases. The concentration of sampling efforts in California and gaps in the literature are concerning, especially with changing agriculture and climate change potentially affecting rodent communities.

ContributorsTariq, Muhamamad (Author) / Sterner, Beckett (Thesis director) / Upham, Nate (Committee member) / Barrett, The Honors College (Contributor) / Dean, W.P. Carey School of Business (Contributor) / School of Life Sciences (Contributor)
Created2023-05
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Description
Systematic Reviews (SRs) aim to synthesize the totality of evidence for clinical practice and are important in making clinical practice guidelines and health policy decisions. However, conducting SRs manually is a laborious and time-consuming process. This challenge is growing due to the increase in the number of databases to search

Systematic Reviews (SRs) aim to synthesize the totality of evidence for clinical practice and are important in making clinical practice guidelines and health policy decisions. However, conducting SRs manually is a laborious and time-consuming process. This challenge is growing due to the increase in the number of databases to search and the papers being published. Hence, the automation of SRs is an essential task. The goal of this thesis work is to develop Natural Language Processing (NLP)-based classifiers to automate the title and abstract-based screening for clinical SRs based on inclusion/exclusion criteria. In clinical SRs, a high-sensitivity system is a key requirement. Most existing methods for SRs use binary classification systems trained on labeled data to predict inclusion/exclusion. While previous studies have shown that NLP-based classification methods can automate title and abstract-based screening for SRs, methods for achieving high-sensitivity have not been empirically studied. In addition, the training strategy for binary classification has several limitations: (1) it ignores the inclusion/exclusion criteria, (2) lacks generalization ability, (3) suffers from low resource data, and (4) fails to achieve reasonable precision at high-sensitivity levels. This thesis work presents contributions to several aspects of the clinical systematic review domain. First, it presents an empirical study of NLP-based supervised text classification and high-sensitivity methods on datasets developed from six different SRs in the clinical domain. Second, this thesis work provides a novel approach to view SR as a Question Answering (QA) problem in order to overcome the limitations of the binary classification training strategy; and propose a more general abstract screening model for different SRs. Finally, this work provides a new QA-based dataset for six different SRs which is made available to the community.
ContributorsParmar, Mihir Prafullsinh (Author) / Baral, Chitta (Thesis advisor) / Devarakonda, Murthy (Thesis advisor) / Riaz, Irbaz B (Committee member) / Arizona State University (Publisher)
Created2021
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ContributorsBeeler, Adeline (Author) / McNally, Mikayla (Co-author) / Schaefer, Sydney (Thesis director) / Lohse, Keith (Committee member) / Barrett, The Honors College (Contributor) / Harrington Bioengineering Program (Contributor)
Created2021-12
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ContributorsBeeler, Adeline (Author) / McNally, Mikayla (Co-author) / Schaefer, Sydney (Thesis director) / Lohse, Keith (Committee member) / Barrett, The Honors College (Contributor) / Harrington Bioengineering Program (Contributor)
Created2021-12
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ContributorsMcNally, Mikayla (Author) / Beeler, Adeline (Co-author) / Schaefer, Sydney (Thesis director) / Lohse, Keith (Committee member) / Barrett, The Honors College (Contributor) / Watts College of Public Service & Community Solut (Contributor)
Created2021-12
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ContributorsMcNally, Mikayla (Author) / Beeler, Adeline (Co-author) / Schaefer, Sydney (Thesis director) / Lohse, Keith (Committee member) / Barrett, The Honors College (Contributor) / Watts College of Public Service & Community Solut (Contributor)
Created2021-12
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Description
Water is a scarce resource that is recycled through wastewater treatment plants (WWTPs) to help fulfill the demand for water. Agriculture is a large consumer of water, indicating that WWTP-treated water is proportionally applied to crops at a high rate. Recycled water is highly regulated but is capable of containing

Water is a scarce resource that is recycled through wastewater treatment plants (WWTPs) to help fulfill the demand for water. Agriculture is a large consumer of water, indicating that WWTP-treated water is proportionally applied to crops at a high rate. Recycled water is highly regulated but is capable of containing high-risk pathogens and contaminants despite the efforts of physical and microbial treatments throughout the WWTP process. WWTPs are also producers of biosolids, treated sewage sludge regulated by the EPA that can be applied in agricultural settings to act as a fertilizer. Biosolids are a useful fertilizer as they are rich in nitrogen and contain many beneficial nutrients for soil and crops. Due to biosolids being a by-product of recycled water, they are susceptible to containing the same pathogens and contaminants that can be transferred in the WWTP systems. Antibiotic resistance (AR) is an ever-growing threat on a global scale and is one of the areas of concern for consideration of pathogen spread from WWTPs. Antibiotic resistance bacteria, created through mutation of bacterial plasmids producing antibiotic resistance genes (ARGs), have been quantified and studied to help mitigate the risk posed by continued AR spread in the environment. This study aims to produce a comprehensive collection of quantified ARG concentration data in biosolids, as well as producing a QMRA model integrating Monte Carlo distributions to provide groundwork for understanding of the direct dosage and consumption of ARGs to the standard U.S. citizen. The study determined that sul1, sul2, tetM, and tetO are ARGs of high concern in biosolid samples based on current concentration data of biosolid samples. The resulting dose models and gene concentration distributions provide data to support the need to mitigate AR risk presented by agricultural biosolid application.
ContributorsMorgan, Grace (Author) / Hamilton, Kerry (Thesis director) / Muenich, Rebecca (Committee member) / Barrett, The Honors College (Contributor) / Harrington Bioengineering Program (Contributor)
Created2022-05
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Description
Background and Purpose— There is limited conclusive data on both pharmacological and holistic treatment options to improve cognition in adults after stroke. In particular, there is lacking evidence for cognitive rehabilitation in the subacute and chronic phases when cognitive impairment may be more perceptible. In this meta-analytic review, our primary

Background and Purpose— There is limited conclusive data on both pharmacological and holistic treatment options to improve cognition in adults after stroke. In particular, there is lacking evidence for cognitive rehabilitation in the subacute and chronic phases when cognitive impairment may be more perceptible. In this meta-analytic review, our primary objective was to determine the cognitive effects of aerobic exercise on post-stroke adults in the post-acute phases. Secondary objectives were to investigate the differential effects of aerobic exercise on sub-domains of cognitive function.
Methods— Data were extracted and filtered from electronic databases PubMed (MEDLINE), CINAHL, Embase, PsycINFO, and Scopus. Intervention effects were represented by Hedges’ g and combined into pooled effect sizes using random effects models. Heterogeneity was evaluated using the Chi-squared (Q) and I-squared statistics.
Results— Five studies met inclusion criteria, representing data from 182 participants. The primary analysis produced a positive overall effect of aerobic exercise on cognitive performance (Hedges’ g [95% confidence interval]= 0.42 [0.007–0.77]). Effects were significantly different from zero for aerobic interventions combined with other physical activity interventions (Hedges’ g [CI] =0.59 [0.26 to 0.92]), but not for aerobic interventions alone (P= 0.40). In specific subdomains, positive moderate effects were found for global cognitive function (Hedges’ g [CI] =0.79 [0.31 to 1.26]) but not for attention and processing speed (P=0.08), executive function (P= 0.84), and working memory (P=0.92).
Conclusions— We determined that aerobic exercise combined with other modes of training produced a significant positive effect on cognition in adults after stroke in the subacute and chronic phases. Our analysis supports the use of combined training as a treatment option to enhance long-term cognitive function in adults after stroke. Further research is needed to determine the efficacy of aerobic training alone.
ContributorsMitchell, Michaela (Author) / Holzapfel, Simon (Thesis director) / Bosch, Pamela (Committee member) / College of Health Solutions (Contributor) / Barrett, The Honors College (Contributor)
Created2019-05
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Description
A growing body of research suggest that experiencing racial discrimination is associated with the development of mental health problems. Lee and Ahn (2011) conducted a meta-analysis that documented the relationship between racial discrimination and psychopathology, including depressive symptoms among Asian Americans. However, evidence of an increase in racial discrimination in

A growing body of research suggest that experiencing racial discrimination is associated with the development of mental health problems. Lee and Ahn (2011) conducted a meta-analysis that documented the relationship between racial discrimination and psychopathology, including depressive symptoms among Asian Americans. However, evidence of an increase in racial discrimination in the last decade requires examining to what degree its link to depressive symptoms has changed since Lee and Ahn (2011)’s seminal study. To address this issue, I conducted a systematic review of research on racial discrimination and depressive symptoms among Asian Americans from 2009-2019 in the United States. I used PsycINFO, Web of Science, PubMed, and ProQuest Dissertations and Theses Global to perform my search. My aims were to: 1) understand the relationship between racial discrimination and depressive symptoms, 2) understand how studies vary across sex, age, measures, socioeconomic and ethnic subgroup (e.g., Chinese Americans, Vietnamese Americans). My results demonstrated that the relationship between racial discrimination and depressive symptoms was primarily positive. Factors regarding sex, age, measures, and socioeconomic status varied across studies. Future research should focus more on current issues regarding Asian Americans and use meta-analytic techniques to further investigate any potential moderators such as socioeconomic status and ethnic subgroups.
ContributorsWaddington, Margaret Mary (Author) / Causadias, José (Thesis director) / Korous, Kevin (Committee member) / School of International Letters and Cultures (Contributor) / Sanford School of Social and Family Dynamics (Contributor) / Barrett, The Honors College (Contributor)
Created2020-05