Matching Items (1,839)
128047-Thumbnail Image.png
Description

Using non-linear dielectric techniques, we have measured the dynamics of 5-methyl-3-heptanol at a temperature at which the Kirkwood correlation factor gK indicates the coexistence of ring- and chain-like hydrogen-bonded structures. Steady state permittivity spectra recorded in the presence of a high dc bias electric field (17 MV/m) reveal that both

Using non-linear dielectric techniques, we have measured the dynamics of 5-methyl-3-heptanol at a temperature at which the Kirkwood correlation factor gK indicates the coexistence of ring- and chain-like hydrogen-bonded structures. Steady state permittivity spectra recorded in the presence of a high dc bias electric field (17 MV/m) reveal that both the amplitude and the time constant are increased by about 10% relative to the low field limit. This change is attributed to the field driven conversion from ring-like to the more polar chain-like structures, and a direct observation of its time dependence shows that the ring/chain structural transition occurs on a time scale that closely matches that of the dielectric Debye peak. This lends strong support to the picture that places fluctuations of the end-to-end vector of hydrogen bonded structures at the origin of the Debye process, equivalent to fluctuations of the net dipole moment or gK. Recognizing that changes in the ring/chain equilibrium constant also impact the spectral separation between Debye and α-process may explain the difference in their temperature dependence whenever gK is sensitive to temperature, i.e., when the structural motifs of hydrogen bonding change considerably.

ContributorsYoung-Gonzales, Amanda (Author) / Richert, Ranko (Author) / College of Liberal Arts and Sciences (Contributor)
Created2016-08-16
128046-Thumbnail Image.png
Description

Gain control is essential for the proper function of any sensory system. However, the precise mechanisms for achieving effective gain control in the brain are unknown. Based on our understanding of the existence and strength of connections in the insect olfactory system, we analyze the conditions that lead to controlled

Gain control is essential for the proper function of any sensory system. However, the precise mechanisms for achieving effective gain control in the brain are unknown. Based on our understanding of the existence and strength of connections in the insect olfactory system, we analyze the conditions that lead to controlled gain in a randomly connected network of excitatory and inhibitory neurons. We consider two scenarios for the variation of input into the system. In the first case, the intensity of the sensory input controls the input currents to a fixed proportion of neurons of the excitatory and inhibitory populations. In the second case, increasing intensity of the sensory stimulus will both, recruit an increasing number of neurons that receive input and change the input current that they receive. Using a mean field approximation for the network activity we derive relationships between the parameters of the network that ensure that the overall level of activity of the excitatory population remains unchanged for increasing intensity of the external stimulation. We find that, first, the main parameters that regulate network gain are the probabilities of connections from the inhibitory population to the excitatory population and of the connections within the inhibitory population. Second, we show that strict gain control is not achievable in a random network in the second case, when the input recruits an increasing number of neurons. Finally, we confirm that the gain control conditions derived from the mean field approximation are valid in simulations of firing rate models and Hodgkin-Huxley conductance based models.

ContributorsSerrano, Eduardo (Author) / Nowotny, Thomas (Author) / Levi, Rafael (Author) / Smith, Brian (Author) / Huerta, Ramon (Author) / College of Liberal Arts and Sciences (Contributor)
Created2013-07-18
128044-Thumbnail Image.png
Description
A modified mathematical model describing the human immunodeficiency virus (HIV) pathogenesis with cytotoxic T-lymphocytes (CTL) and infected cells in eclipse phase is presented and studied in this paper. The model under consideration also includes a saturated rate describing viral infection. First, the positivity and boundedness of solutions for nonnegative initial

A modified mathematical model describing the human immunodeficiency virus (HIV) pathogenesis with cytotoxic T-lymphocytes (CTL) and infected cells in eclipse phase is presented and studied in this paper. The model under consideration also includes a saturated rate describing viral infection. First, the positivity and boundedness of solutions for nonnegative initial data are proved. Next, the global stability of the disease free steady state and the endemic steady states are established depending on the basic reproduction number R[subscript 0] and the CTL immune response reproduction number R[subscript CTL]. Moreover, numerical simulations are performed in order to show the numerical stability for each steady state and to support our theoretical findings. Our model based findings suggest that system immunity represented by CTL may control viral replication and reduce the infection.
ContributorsAllali, Karam (Author) / Danane, Jaouad (Author) / Kuang, Yang (Contributor) / College of Liberal Arts and Sciences (Contributor)
Created2017-08-21
128043-Thumbnail Image.png
Description

Honey bees (Apis mellifera) provide a system for studying social and food-related behavior. A caste of workers performs age-related tasks: young bees (nurses) usually feed the brood and other adult bees inside the nest, while older bees (foragers) forage outside for pollen, a protein/lipid source, or nectar, a carbohydrate source.

Honey bees (Apis mellifera) provide a system for studying social and food-related behavior. A caste of workers performs age-related tasks: young bees (nurses) usually feed the brood and other adult bees inside the nest, while older bees (foragers) forage outside for pollen, a protein/lipid source, or nectar, a carbohydrate source. The workers' transition from nursing to foraging and their foraging preferences correlate with differences in gustatory perception, metabolic gene expression, and endocrine physiology including the endocrine factors vitellogenin (Vg) and juvenile hormone (JH). However, the understanding of connections among social behavior, energy metabolism, and endocrine factors is incomplete. We used RNA interference (RNAi) to perturb the gene network of Vg and JH to learn more about these connections through effects on gustation, gene transcripts, and physiology. The RNAi perturbation was achieved by single and double knockdown of the genes ultraspiracle (usp) and vg, which encode a putative JH receptor and Vg, respectively. The double knockdown enhanced gustatory perception and elevated hemolymph glucose, trehalose, and JH. We also observed transcriptional responses in insulin like peptide 1 (ilp1), the adipokinetic hormone receptor (AKHR), and cGMP-dependent protein kinase (PKG, or “foraging gene” Amfor). Our study demonstrates that the Vg–JH regulatory module controls changes in carbohydrate metabolism, but not lipid metabolism, when worker bees shift from nursing to foraging. The module is also placed upstream of ilp1, AKHR, and PKG for the first time. As insulin, adipokinetic hormone (AKH), and PKG pathways influence metabolism and gustation in many animals, we propose that honey bees have conserved pathways in carbohydrate metabolism and conserved connections between energy metabolism and gustatory perception. Thus, perhaps the bee can make general contributions to the understanding of food-related behavior and metabolic disorders.

ContributorsWang, Ying (Author) / Brent, Colin S. (Author) / Fennern, Erin (Author) / Amdam, Gro (Author) / College of Liberal Arts and Sciences (Contributor)
Created2012-06-28
128042-Thumbnail Image.png
Description

The properties of InAs quantum dots (QDs) have been studied for application in intermediate band solar cells. It is found that suppression of plastic relaxation in the QDs has a significant effect on the optoelectronic properties. Partial capping plus annealing is shown to be effective in controlling the height of

The properties of InAs quantum dots (QDs) have been studied for application in intermediate band solar cells. It is found that suppression of plastic relaxation in the QDs has a significant effect on the optoelectronic properties. Partial capping plus annealing is shown to be effective in controlling the height of the QDs and in suppressing plastic relaxation. A force balancing model is used to explain the relationship between plastic relaxation and QD height. A strong luminescence has been observed from strained QDs, indicating the presence of localized states in the desired energy range. No luminescence has been observed from plastically relaxed QDs.

ContributorsXie, Hongen (Author) / Prioli Menezes, Rodrigo (Author) / Fischer, Alec M. (Author) / Ponce, Fernando (Author) / Kawabata, R. M. S. (Author) / Pinto, L. D. (Author) / Jakomin, R. (Author) / Pires, M. P. (Author) / Souza, P. L. (Author) / College of Liberal Arts and Sciences (Contributor)
Created2016-07-15
128034-Thumbnail Image.png
Description

We introduce a non-Hermitian Schrödinger-type approximation of optical Bloch equations for two-level systems. This approximation provides a complete and accurate description of the coherence and decoherence dynamics in both weak and strong laser fields at the cost of losing accuracy in the description of populations. In this approach, it is

We introduce a non-Hermitian Schrödinger-type approximation of optical Bloch equations for two-level systems. This approximation provides a complete and accurate description of the coherence and decoherence dynamics in both weak and strong laser fields at the cost of losing accuracy in the description of populations. In this approach, it is sufficient to propagate the wave function of the quantum system instead of the density matrix, providing that relaxation and dephasing are taken into account via automatically adjusted time-dependent gain and decay rates. The developed formalism is applied to the problem of scattering and absorption of electromagnetic radiation by a thin layer comprised of interacting two-level emitters.

ContributorsPuthumpally-Joseph, Raiju (Author) / Sukharev, Maxim (Author) / Charron, Eric (Author) / College of Liberal Arts and Sciences (Contributor)
Created2016-04-20
128031-Thumbnail Image.png
Description

The ‘Hestia Project’ uses a bottom-up approach to quantify fossil fuel CO2(FFCO2) emissions spatially at the building/street level and temporally at the hourly level. Hestia FFCO2 emissions are provided in the form of a group of sector-specific vector layers with point, line, and polygon sources to support carbon cycle science

The ‘Hestia Project’ uses a bottom-up approach to quantify fossil fuel CO2(FFCO2) emissions spatially at the building/street level and temporally at the hourly level. Hestia FFCO2 emissions are provided in the form of a group of sector-specific vector layers with point, line, and polygon sources to support carbon cycle science and climate policy. Application to carbon cycle science, in particular, requires regular gridded data in order to link surface carbon fluxes to atmospheric transport models. However, the heterogeneity and complexity of FFCO2 sources within regular grids is sensitive to spatial resolution. From the perspective of a data provider, we need to find a balance between resolution and data volume so that the gridded data product retains the maximum amount of information content while maintaining an efficient data volume.

The Shannon entropy determines the minimum bits that are needed to encode an information source and can serve as a metric for the effective information content. In this paper, we present an analysis of the Shannon entropy of gridded FFCO2 emissions with varying resolutions in four Hestia study areas, and find: (1) the Shannon entropy increases with smaller grid resolution until it reaches a maximum value (the max-entropy resolution); (2) total emissions (the sum of several sector-specific emission fields) show a finer max-entropy resolution than each of the sector-specific fields; (3) the residential emissions show a finer max-entropy resolution than the commercial emissions; (4) the max-entropy resolution of the onroad emissions grid is closely correlated to the density of the road network. These findings suggest that the Shannon entropy can detect the information effectiveness of the spatial resolution of gridded FFCO2 emissions. Hence, the resolution-entropy relationship can be used to assist in determining an appropriate spatial resolution for urban CO2 flux studies. We conclude that the optimal spatial resolution for providing Hestia total FFCO2 emissions products is centered around 100 m, at which the FFCO2 emissions data can not only fully meet the requirement of urban flux integration, but also be effectively used in understanding the relationships between FFCO2 emissions and various social-economic variables at the U.S. census block group level.

ContributorsLiang, Jianming (Author) / Gurney, Kevin (Author) / O'Keeffe, Darragh (Author) / Hutchins, Maya (Author) / Patarasuk, Risa (Author) / Huang, Jianhua (Author) / Song, Yang (Author) / Rao, Preeti (Author) / College of Liberal Arts and Sciences (Contributor)
Created2017-05-19
128029-Thumbnail Image.png
Description

Photoconvertible fluorescent proteins (pcFPs) constitute a large group of fluorescent proteins related to green fluorescent protein (GFP) that, when exposed to blue light, bear the capability of irreversibly switching their emission color from green to red. Not surprisingly, this fascinating class of FPs has found numerous applications, in particular for

Photoconvertible fluorescent proteins (pcFPs) constitute a large group of fluorescent proteins related to green fluorescent protein (GFP) that, when exposed to blue light, bear the capability of irreversibly switching their emission color from green to red. Not surprisingly, this fascinating class of FPs has found numerous applications, in particular for the visualization of biological processes. A detailed understanding of the photoconversion mechanism appears indispensable in the design of improved variants for applications such as super-resolution imaging. In this article, recent work is reviewed that involves using pcFPs as a model system for studying protein dynamics. Evidence has been provided that the evolution of pcFPs from a green ancestor involved the natural selection for altered dynamical features of the beta-barrel fold. It appears that photoconversion may be the outcome of a long-range positional shift of a fold-anchoring region. A relatively stiff, rigid element appears to have migrated away from the chromophore-bearing section to the opposite edge of the barrel, thereby endowing pcFPs with increased active site flexibility while keeping the fold intact. In this way, the stage was set for the coupling of light absorption with subsequent chemical transformations. The emerging mechanistic model suggests that highly specific dynamic motions are linked to key chemical steps, preparing the system for a concerted deprotonation and β-elimination reaction that enlarges the chromophore’s π-conjugation to generate red color.

ContributorsWachter, Rebekka (Author) / College of Liberal Arts and Sciences (Contributor)
Created2017-08-18
128028-Thumbnail Image.png
Description

We report photon-noise limited performance of horn-coupled, aluminum lumped-element kinetic inductance detectors at millimeter wavelengths. The detectors are illuminated by a millimeter-wave source that uses an active multiplier chain to produce radiation between 140 and 160 GHz. We feed the multiplier with either amplified broadband noise or a continuous-wave tone from

We report photon-noise limited performance of horn-coupled, aluminum lumped-element kinetic inductance detectors at millimeter wavelengths. The detectors are illuminated by a millimeter-wave source that uses an active multiplier chain to produce radiation between 140 and 160 GHz. We feed the multiplier with either amplified broadband noise or a continuous-wave tone from a microwave signal generator. We demonstrate that the detector response over a 40 dB range of source power is well-described by a simple model that considers the number of quasiparticles. The detector noise-equivalent power (NEP) is dominated by photon noise when the absorbed power is greater than approximately 1 pW, which corresponds to NEP ≈ 2 × 10-17 W Hz-1/2, referenced to absorbed power. At higher source power levels, we observe the relationships between noise and power expected from the photon statistics of the source signal: NEP ∝ P for broadband (chaotic) illumination and NEP ∝ P1/2 for continuous-wave (coherent) illumination.

ContributorsFlanigan, D. (Author) / McCarrick, H. (Author) / Jones, G. (Author) / Johnson, B. R. (Author) / Abitbol, M. H. (Author) / Ade, P. (Author) / Araujo, D. (Author) / Bradford, K. (Author) / Cantor, R. (Author) / Che, George (Author) / Day, P. (Author) / Doyle, S. (Author) / Kjellstrand, C. B. (Author) / Leduc, H. (Author) / Limon, M. (Author) / Luu, V. (Author) / Mauskopf, Philip (Author) / Miller, A. (Author) / Mroczkowski, T. (Author) / Tucker, C. (Author) / Zmuidzinas, J. (Author) / College of Liberal Arts and Sciences (Contributor)
Created2016-02-25
128027-Thumbnail Image.png
Description

Ants are a highly successful family of insects that thrive in a variety of habitats across the world. Perhaps their best-known features are complex social organization and strict division of labor, separating reproduction from the day-to-day maintenance and care of the colony, as well as strict discrimination against foreign individuals.

Ants are a highly successful family of insects that thrive in a variety of habitats across the world. Perhaps their best-known features are complex social organization and strict division of labor, separating reproduction from the day-to-day maintenance and care of the colony, as well as strict discrimination against foreign individuals. Since these social characteristics in ants are thought to be mediated by semiochemicals, a thorough analysis of these signals, and the receptors that detect them, is critical in revealing mechanisms that lead to stereotypic behaviors. To address these questions, we have defined and characterized the major chemoreceptor families in a pair of behaviorally and evolutionarily distinct ant species, Camponotus floridanus and Harpegnathos saltator. Through comprehensive re-annotation, we show that these ant species harbor some of the largest yet known repertoires of odorant receptors (Ors) among insects, as well as a more modest number of gustatory receptors (Grs) and variant ionotropic glutamate receptors (Irs).

Our phylogenetic analyses further demonstrate remarkably rapid gains and losses of ant Ors, while Grs and Irs have also experienced birth-and-death evolution to different degrees. In addition, comparisons of antennal transcriptomes between sexes identify many chemoreceptors that are differentially expressed between males and females and between species. We have also revealed an agonist for a worker-enriched OR from C. floridanus, representing the first case of a heterologously characterized ant tuning Or. Collectively, our analysis reveals a large number of ant chemoreceptors exhibiting patterns of differential expression and evolution consistent with sex/species-specific functions. These differentially expressed genes are likely associated with sex-based differences, as well as the radically different social lifestyles observed between C. floridanus and H. saltator, and thus are targets for further functional characterization. Our findings represent an important advance toward understanding the molecular basis of social interactions and the differential chemical ecologies among ant species.

ContributorsZhou, Xiaofan (Author) / Slone, Jesse D. (Author) / Rokas, Antonis (Author) / Berger, Shelley L. (Author) / Liebig, Juergen (Author) / Ray, Anandasankar (Author) / Reinberg, Danny (Author) / Zwiebel, Laurence J. (Author) / College of Liberal Arts and Sciences (Contributor)
Created2012-08-30