Matching Items (19)
Description
In the first part of this thesis, we use the generalized Landau-level represen-
tation to study the effect of screening on the properties of the graphene quantum Hall states with integer filling factors. The analysis is performed in the low-energy Dirac model in the mean-field approximation, in which the long-range Coulomb in- teraction is modified by the one-loop static screening effects. The solutions demon- strate that static screening leads to a substantial suppression of the gap parameters in the quantum Hall states with a broken U (4) flavor symmetry. The results of the temperature dependence of the energy gaps mimic well the temperature dependence of the activation energies measured in experiment. The Landau-level running of the quasiparticle dynamical parameters could be tested via optical studies of the integer quantum Hall states.
In the second part, by using the generalized Landau-level representation, we study the interaction induced chiral asymmetry in cold QED plasma beyond the weak-field approximation. The chiral shift and the parity-even chiral chemical potential function are obtained numerically and are found peaking near the Fermi surface and increases and decreases with the Landau level index, respectively. The results are used to quantify the chiral asymmetry of the Fermi surface in dense QED matter. The chiral asymmetry appears to be rather small even in the strongest mag- netic fields and at the highest stellar densities. However, the analogous asymmetry can be substantial in the case of dense quark matter.
tation to study the effect of screening on the properties of the graphene quantum Hall states with integer filling factors. The analysis is performed in the low-energy Dirac model in the mean-field approximation, in which the long-range Coulomb in- teraction is modified by the one-loop static screening effects. The solutions demon- strate that static screening leads to a substantial suppression of the gap parameters in the quantum Hall states with a broken U (4) flavor symmetry. The results of the temperature dependence of the energy gaps mimic well the temperature dependence of the activation energies measured in experiment. The Landau-level running of the quasiparticle dynamical parameters could be tested via optical studies of the integer quantum Hall states.
In the second part, by using the generalized Landau-level representation, we study the interaction induced chiral asymmetry in cold QED plasma beyond the weak-field approximation. The chiral shift and the parity-even chiral chemical potential function are obtained numerically and are found peaking near the Fermi surface and increases and decreases with the Landau level index, respectively. The results are used to quantify the chiral asymmetry of the Fermi surface in dense QED matter. The chiral asymmetry appears to be rather small even in the strongest mag- netic fields and at the highest stellar densities. However, the analogous asymmetry can be substantial in the case of dense quark matter.
ContributorsXia, Lifang, Ph.D (Author) / Shovkovy, Igor (Thesis advisor) / Lebed, Richard (Committee member) / Schmidt, Kevin (Committee member) / Damien, Easson (Committee member) / Arizona State University (Publisher)
Created2016
Description
The superior brightness and ultra short pulse duration of X-ray free electron laser
(XFEL) allows it to outrun radiation damage in coherent diffractive imaging since elastic scattering terminates before photoelectron cascades commences. This “diffract-before-destroy” feature of XFEL opened up new opportunities for biological macromolecule imaging and structure studies by breaking the limit to spatial resolution imposed by the maximum dose that is allowed before radiation damage. However, data collection in serial femto-second crystallography (SFX) using XFEL is affected by a bunch of stochastic factors, which pose great challenges to the data analysis in SFX. These stochastic factors include crystal size, shape, random orientation, X-ray photon flux, position and energy spectrum. Monte-Carlo integration proves effective and successful in extracting the structure factors by merging all diffraction patterns given that the data set is sufficiently large to average out all stochastic factors. However, this approach typically requires hundreds of thousands of patterns collected from experiments. This dissertation explores both experimental and algorithmic methods to eliminate or reduce the effect of stochastic factors in data acquisition and analysis. Coherent convergent X-ray beam diffraction (CCB) is discussed for possibilities of obtaining single-shot angular-integrated rocking curves. It is also shown the interference between Bragg disks helps ab-initio phasing. Two-color diffraction scheme is proposed for time-resolved studies and general data collection strategies are discussed based on error metrics. A new auto-indexing algorithm for sparse patterns is developed and demonstrated for both simulated and experimental data. Statistics show that indexing rate is increased by 3 times for I3C data set collected from beam time LJ69 at Linac coherent light source (LCLS). Finally, dynamical inversion from electron diffraction is explored as an alternative approach for structure determination.
(XFEL) allows it to outrun radiation damage in coherent diffractive imaging since elastic scattering terminates before photoelectron cascades commences. This “diffract-before-destroy” feature of XFEL opened up new opportunities for biological macromolecule imaging and structure studies by breaking the limit to spatial resolution imposed by the maximum dose that is allowed before radiation damage. However, data collection in serial femto-second crystallography (SFX) using XFEL is affected by a bunch of stochastic factors, which pose great challenges to the data analysis in SFX. These stochastic factors include crystal size, shape, random orientation, X-ray photon flux, position and energy spectrum. Monte-Carlo integration proves effective and successful in extracting the structure factors by merging all diffraction patterns given that the data set is sufficiently large to average out all stochastic factors. However, this approach typically requires hundreds of thousands of patterns collected from experiments. This dissertation explores both experimental and algorithmic methods to eliminate or reduce the effect of stochastic factors in data acquisition and analysis. Coherent convergent X-ray beam diffraction (CCB) is discussed for possibilities of obtaining single-shot angular-integrated rocking curves. It is also shown the interference between Bragg disks helps ab-initio phasing. Two-color diffraction scheme is proposed for time-resolved studies and general data collection strategies are discussed based on error metrics. A new auto-indexing algorithm for sparse patterns is developed and demonstrated for both simulated and experimental data. Statistics show that indexing rate is increased by 3 times for I3C data set collected from beam time LJ69 at Linac coherent light source (LCLS). Finally, dynamical inversion from electron diffraction is explored as an alternative approach for structure determination.
ContributorsLi, Chufeng (Author) / Spence, John CH (Thesis advisor) / Spence, John (Committee member) / Kirian, Richard (Committee member) / Weierstall, Uwe (Committee member) / Schmidt, Kevin (Committee member) / Arizona State University (Publisher)
Created2016
Description
Phase problem has been long-standing in x-ray diffractive imaging. It is originated from the fact that only the amplitude of the scattered wave can be recorded by the detector, losing the phase information. The measurement of amplitude alone is insufficient to solve the structure. Therefore, phase retrieval is essential to structure determination with X-ray diffractive imaging. So far, many experimental as well as algorithmic approaches have been developed to address the phase problem. The experimental phasing methods, such as MAD, SAD etc, exploit the phase relation in vector space. They usually demand a lot of efforts to prepare the samples and require much more data. On the other hand, iterative phasing algorithms make use of the prior knowledge and various constraints in real and reciprocal space. In this thesis, new approaches to the problem of direct digital phasing of X-ray diffraction patterns from two-dimensional organic crystals were presented. The phase problem for Bragg diffraction from two-dimensional (2D) crystalline monolayer in transmission may be solved by imposing a compact support that sets the density to zero outside the monolayer. By iterating between the measured stucture factor magnitudes along reciprocal space rods (starting with random phases) and a density of the correct sign, the complex scattered amplitudes may be found (J. Struct Biol 144, 209 (2003)). However this one-dimensional support function fails to link the rod phases correctly unless a low-resolution real-space map is also available. Minimum prior information required for successful three-dimensional (3D) structure retrieval from a 2D crystal XFEL diffraction dataset were investigated, when using the HIO algorithm. This method provides an alternative way to phase 2D crystal dataset, with less dependence on the high quality model used in the molecular replacement method.
ContributorsZhao, Yun (Author) / Spence, John C.H. (Thesis advisor) / Schmidt, Kevin (Committee member) / Weierstall, Uwe (Committee member) / Kirian, Richard (Committee member) / Zatsepin, Nadia (Committee member) / Arizona State University (Publisher)
Created2016
Description
While the use of super-cooled gasses as a tool for the study of macroscopic quantum effects has only become experimentally viable in recent years, theories involing such gasses have existed almost as long as quantum theory itself. Albert Einstein first proposed the concept of what is known today as a Bose-Einstein condensate; the driving principle behind his theory was a deliberate exploitation of the symmetric property of multiparticle bosonic wavefunctions. Specifically, since the Bose-Einstein statistics of bosons dic- tate that any arbitrary number of particles can occupy the same state, it is possible in an extremely low energy environment for particles on the order of Avagadro's number to all condense into the ground state. This state of matter is now called a Bose-Einstein condensate (hereafter referred to as a BEC). This state of matter is interesting because having such a large number of particles in the same state allows for the observation of macroscopic quantum effects.
ContributorsSpencer, Kwit (Author) / Schmidt, Kevin (Thesis director) / Treacy, Michael (Committee member) / Dawson, Colby (Committee member) / Barrett, The Honors College (Contributor) / College of Liberal Arts and Sciences (Contributor)
Created2012-12
Description
In the developing field of nonlinear plasmonics, it is important to understand the nonlinear responses of the metallic nanostructures. In the present thesis, rigorous electrodynamical simulations based on the fully vectorial three-dimensional nonlinear hydrodynamic Drude model describing metal coupled to Maxwell's equations are performed to investigate linear and nonlinear responses of the plasmonic materials and their coupling with quantum emitters.The first part of this thesis is devoted to analyzing properties of the localized surface plasmon resonances of metallic nanostructures and their nonlinear optical responses. The behavior of the second harmonic is investigated as a function of various physical parameters at different plasmonic interfaces, revealing highly complex dynamics. By collaborating with several research teams, simulations are proven to be in close agreement with experiments, both quantitative and qualitative.
The second part of the thesis explores the strong coupling regime and its influence on the second harmonic generation. Considering plasmonic systems of molecules and periodic nanohole arrays on equal footing in the nonlinear regime is done for the first time. The results obtained are supported by a simple analytical model.
ContributorsDrobnyh, Elena (Author) / Sukharev, Maxim (Thesis advisor) / Schmidt, Kevin (Committee member) / Goodnick, Stephen (Committee member) / Mujica, Vladimiro (Committee member) / Arizona State University (Publisher)
Created2022
Description
The work covered in this dissertation addresses two areas revolving around superconducting nanowire detector development. The first is regarding array architectureused for a large-scale system. The second involves operating under conditions that
allow for a linear response in a superconducting nanowire detector. This dissertation
provides the relevant theory, design, and measurements to characterize these detectors. The array architecture studied here utilizes a superconducting nanowire single
photon detector embedded in an LC resonant structure, allowing multiple pixels to
couple to a single transmission line and identify each one by a tuned characteristic frequency. The pixels in the array are DC-biased, allowing them to respond to absorbed
single photons and avoiding any dead time associated with RF biasing. Measured
results from a 16-pixel array based on chip components are analyzed. The development here directs this architecture towards integrating a proven 16-pixel design onto
a single substrate with the capacity to scale to a higher pixel count and integrate
into a broad range of applications. This text outlines the theory behind the proposed
linear operation regime and details the considerations needed to achieve a response.
The basic principle relies on the time-dependent change in kinetic inductance due to
an absorbed photon. Under the conditions discussed in the text, this would allow
for fast photon number resolution. However, without reaching those conditions, the
detector may still operate under a higher incident photon flux. Two device designs
are formulated and simulated, weighing the benefits and drawbacks of each approach.
One of the device designs uses an impedance-matching taper to minimize reflections
between the nanowire and 50 Ohm amplifier. The other design utilizes N parallel
nanowires spanning the length of a gap along a 50 Ohm transmission line path. The
tapered device is realized to a proof-of-principle stage and measured under conditions
that set a limit on the device’s linear response to optical power. The performance of this detector points to areas of improvement that are addressed or circumvented
in the parallel bridge design. Potential for future development is discussed for the
frequency multiplexed superconducting nanowire single photon detector array and
the linear mode detector.
ContributorsGlasby, Jacob (Author) / Mauskopf, Philip (Thesis advisor) / Chamberlin, Ralph (Committee member) / Schmidt, Kevin (Committee member) / Trichopoulos, Georgios (Committee member) / Arizona State University (Publisher)
Created2023
Description
CTB-MPR is a fusion protein between the B subunit of cholera toxin (CTB) and the membrane-proximal region of gp41 (MPR), the transmembrane envelope protein of Human immunodeficiency virus 1 (HIV-1), and has previously been shown to induce the production of anti-HIV-1 antibodies with antiviral functions. To further improve the design of this candidate vaccine, X-ray crystallography experiments were performed to obtain structural information about this fusion protein. Several variants of CTB-MPR were designed, constructed and recombinantly expressed in Escherichia coli. The first variant contained a flexible GPGP linker between CTB and MPR, and yielded crystals that diffracted to a resolution of 2.3 Å, but only the CTB region was detected in the electron-density map. A second variant, in which the CTB was directly attached to MPR, was shown to destabilize pentamer formation. A third construct containing a polyalanine linker between CTB and MPR proved to stabilize the pentameric form of the protein during purification. The purification procedure was shown to produce a homogeneously pure and monodisperse sample for crystallization. Initial crystallization experiments led to pseudo-crystals which were ordered in only two dimensions and were disordered in the third dimension. Nanocrystals obtained using the same precipitant showed promising X-ray diffraction to 5 Å resolution in femtosecond nanocrystallography experiments at the Linac Coherent Light Source at the SLAC National Accelerator Laboratory. The results demonstrate the utility of femtosecond X-ray crystallography to enable structural analysis based on nano/microcrystals of a protein for which no macroscopic crystals ordered in three dimensions have been observed before.
ContributorsLee, Ho-Hsien (Author) / Cherni, Irene (Author) / Yu, HongQi (Author) / Fromme, Raimund (Author) / Doran, Jeffrey (Author) / Grotjohann, Ingo (Author) / Mittman, Michele (Author) / Basu, Shibom (Author) / Deb, Arpan (Author) / Dorner, Katerina (Author) / Aquila, Andrew (Author) / Barty, Anton (Author) / Boutet, Sebastien (Author) / Chapman, Henry N. (Author) / Doak, R. Bruce (Author) / Hunter, Mark (Author) / James, Daniel (Author) / Kirian, Richard (Author) / Kupitz, Christopher (Author) / Lawrence, Robert (Author) / Liu, Haiguang (Author) / Nass, Karol (Author) / Schlichting, Ilme (Author) / Schmidt, Kevin (Author) / Seibert, M. Marvin (Author) / Shoeman, Robert L. (Author) / Spence, John (Author) / Stellato, Francesco (Author) / Weierstall, Uwe (Author) / Williams, Garth J. (Author) / Yoon, Chun Hong (Author) / Wang, Dingjie (Author) / Zatsepin, Nadia (Author) / Hogue, Brenda (Author) / Matoba, Nobuyuki (Author) / Fromme, Petra (Author) / Mor, Tsafrir (Author) / ASU Biodesign Center Immunotherapy, Vaccines and Virotherapy (Contributor) / Department of Chemistry and Biochemistry (Contributor) / College of Liberal Arts and Sciences (Contributor) / School of Life Sciences (Contributor) / Biodesign Institute (Contributor) / Infectious Diseases and Vaccinology (Contributor) / Department of Physics (Contributor)
Created2014-08-20
Description
We compare three schemes for time-resolved X-ray diffraction from protein nanocrystals using an X-ray free-electron laser. We find expressions for the errors in structure factor measurement using the Monte Carlo pump-probe method of data analysis with a liquid jet, the fixed sample pump-probe (goniometer) method (both diffract-and-destroy, and below the safe damage dose), and a proposed two-color method. Here, an optical pump pulse arrives between X-ray pulses of slightly different energies which hit the same nanocrystal, using a weak first X-ray pulse which does not damage the sample. (Radiation damage is outrun in the other cases.) This two-color method, in which separated Bragg spots are impressed on the same detector readout, eliminates stochastic fluctuations in crystal size, shape, and orientation and is found to require two orders of magnitude fewer diffraction patterns than the currently used Monte Carlo liquid jet method, for 1% accuracy. Expressions are given for errors in structure factor measurement for the four approaches, and detailed simulations provided for cathepsin B and IC3 crystals. While the error is independent of the number of shots for the dose-limited goniometer method, it falls off inversely as the square root of the number of shots for the two-color and Monte Carlo methods, with a much smaller pre-factor for the two-color mode, when the first shot is below the damage threshold.
ContributorsLi, Chufeng (Author) / Schmidt, Kevin (Author) / Spence, John (Author) / College of Liberal Arts and Sciences (Contributor) / Department of Physics (Contributor)
Created2015-06-12
Description
We present microscopic calculations of light and medium mass nuclei and the equation of state of symmetric and asymmetric nuclear matter using different nucleon-nucleon interactions, including a new Argonne version that has the same spin-isospin structure as local chiral forces at next-to-next-to-leading order. The calculations are performed using auxiliary field diffusion Monte Carlo (AFDMC) combined with an improved variational wave function and sampling technique. The AFDMC method can now be used to successfully calculate the energies of very light to medium mass nuclei as well as the energy of isospin-asymmetric nuclear matter, demonstrating microscopically the quadratic dependence of the energy on the symmetry energy.
ContributorsGandolfi, S. (Author) / Lovato, A. (Author) / Carlson, J. (Author) / Schmidt, Kevin (Author) / College of Liberal Arts and Sciences (Contributor)
Created2014-12-29