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Despite significant advances in digital pathology and automation sciences, current diagnostic practice for cancer detection primarily relies on a qualitative manual inspection of tissue architecture and cell and nuclear morphology in stained biopsies using low-magnification, two-dimensional (2D) brightfield microscopy. The efficacy of this process is limited by inter-operator variations in

Despite significant advances in digital pathology and automation sciences, current diagnostic practice for cancer detection primarily relies on a qualitative manual inspection of tissue architecture and cell and nuclear morphology in stained biopsies using low-magnification, two-dimensional (2D) brightfield microscopy. The efficacy of this process is limited by inter-operator variations in sample preparation and imaging, and by inter-observer variability in assessment. Over the past few decades, the predictive value quantitative morphology measurements derived from computerized analysis of micrographs has been compromised by the inability of 2D microscopy to capture information in the third dimension, and by the anisotropic spatial resolution inherent to conventional microscopy techniques that generate volumetric images by stacking 2D optical sections to approximate 3D. To gain insight into the analytical 3D nature of cells, this dissertation explores the application of a new technology for single-cell optical computed tomography (optical cell CT) that is a promising 3D tomographic imaging technique which uses visible light absorption to image stained cells individually with sub-micron, isotropic spatial resolution. This dissertation provides a scalable analytical framework to perform fully-automated 3D morphological analysis from transmission-mode optical cell CT images of hematoxylin-stained cells. The developed framework performs rapid and accurate quantification of 3D cell and nuclear morphology, facilitates assessment of morphological heterogeneity, and generates shape- and texture-based biosignatures predictive of the cell state. Custom 3D image segmentation methods were developed to precisely delineate volumes of interest (VOIs) from reconstructed cell images. Comparison with user-defined ground truth assessments yielded an average agreement (DICE coefficient) of 94% for the cell and its nucleus. Seventy nine biologically relevant morphological descriptors (features) were computed from the segmented VOIs, and statistical classification methods were implemented to determine the subset of features that best predicted cell health. The efficacy of our proposed framework was demonstrated on an in vitro model of multistep carcinogenesis in human Barrett's esophagus (BE) and classifier performance using our 3D morphometric analysis was compared against computerized analysis of 2D image slices that reflected conventional cytological observation. Our results enable sensitive and specific nuclear grade classification for early cancer diagnosis and underline the value of the approach as an objective adjunctive tool to better understand morphological changes associated with malignant transformation.
ContributorsNandakumar, Vivek (Author) / Meldrum, Deirdre R (Thesis advisor) / Nelson, Alan C. (Committee member) / Karam, Lina J (Committee member) / Ye, Jieping (Committee member) / Johnson, Roger H (Committee member) / Bussey, Kimberly J (Committee member) / Arizona State University (Publisher)
Created2013
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The aim of this study was to compare the effects of an intervention involving physical practice combined with motor imagery and physical practice alone on swimming performance for fifty-yard freestyle. Forty-five male and female high school swimmers were participants on two different high school teams. One team was the treatment

The aim of this study was to compare the effects of an intervention involving physical practice combined with motor imagery and physical practice alone on swimming performance for fifty-yard freestyle. Forty-five male and female high school swimmers were participants on two different high school teams. One team was the treatment group, which included the participants partaking in both motor imagery and physical practice. The other team served as the age matched control group, and the swimmers participated in physical practice only. The combined practice group performed motor imagery three times per week and physical practice five times per week. The physical practice only group performed physical practice five times per week. Each group performed their respective tasks for 9-weeks. Pre-, half-point, and post-tests consisted of a timed fifty-yard freestyle. The treatment group produced significantly faster times on the percent change in swim time scores in comparison to the control group for the half-time to post-time and pre-time to post-time score (p=.000). The treatment group also produced better performances on the pre-time to half-time scores, however, the results were not statistically significant (p = .009). Findings, therefore, support the effectiveness of motor imagery in enhancing swim performance, when combined with physical practice.
ContributorsSears, Mychaela Leduc (Author) / Hoffner, Kristin (Thesis director) / Broman, Tannah (Committee member) / School of Nutrition and Health Promotion (Contributor) / Barrett, The Honors College (Contributor)
Created2016-12
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This study reports a preparation method of a new moisture swing sorbent for CO2 capture from air. The new sorbent components include ion exchange resin (IER) and polyvinyl chloride (PVC) as a binder. The IER can absorb CO2 when surrounding is dry and release CO2 when surrounding is wet. The

This study reports a preparation method of a new moisture swing sorbent for CO2 capture from air. The new sorbent components include ion exchange resin (IER) and polyvinyl chloride (PVC) as a binder. The IER can absorb CO2 when surrounding is dry and release CO2 when surrounding is wet. The manuscript presents the studies of membrane structure, kinetic model of absorption process, performance of desorption process and the diffusivity of water molecules in the CO2 absorbent. It has been proved that the kinetic performance of CO2 absorption/desorption can be improved by using thin binder and hot water treatment. The fast kinetics of P-100-90C absorbent is due to the thin PVC binder, and high diffusion rate of H[subscript 2]O molecules in the sample. The impressive is this new CO2 absorbent has the fastest CO2 absorption rate among all absorbents which have been reported by other up-to-date literatures.

ContributorsShi, Xiaoyang (Author) / Li, Qibin (Author) / Wang, Tao (Author) / Lackner, Klaus (Author) / Ira A. Fulton Schools of Engineering (Contributor)
Created2017-06-22
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The objective of this study was to find out the impact of environmental conditions on the survival of intestinal parasites on environmental surfaces commonly implicated in the transmission of these parasites. The study was performed by incubating Cryptosporidium and Giardia (oo)cysts on environmentally relevant surfaces such as brushed stainless steel,

The objective of this study was to find out the impact of environmental conditions on the survival of intestinal parasites on environmental surfaces commonly implicated in the transmission of these parasites. The study was performed by incubating Cryptosporidium and Giardia (oo)cysts on environmentally relevant surfaces such as brushed stainless steel, formica, ceramic, fabric, and skin. Parallel experiments were conducted using clean and soiled coupons incubated under three temperatures. The die-off coefficient rates (K) were calculated using first-order exponential formula. For both parasites, the fastest die-off was recorded on fabric, followed by ceramic, formica, skin, and steel. Die-off rates were directly correlated to the incubation temperatures and surface porosity. The presence of organic matter enhanced the survivability of the resting stages of test parasites. The decay rates calculated in this study can be used in models for public health decision-making process and highlights the mitigation role of hand hygiene agents in their prevention and control.

ContributorsAlum, Absar (Author) / Absar, Isra M. (Author) / Asaad, Hamas (Author) / Rubino, Joseph R. (Author) / Ijaz, M. Khalid (Author) / Ira A. Fulton Schools of Engineering (Contributor)
Created2014-06-17
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Ferromagnetic Heusler Co2FeAl0.5Si0.5 epitaxial thin-films have been fabricated in the L21 structure with saturation magnetizations over 1200 emu/cm3. Andreev reflection measurements show that the spin polarization is as high as 80% in samples sputtered on unheated MgO (100) substrates and annealed at high temperatures. However, the spin polarization is considerably

Ferromagnetic Heusler Co2FeAl0.5Si0.5 epitaxial thin-films have been fabricated in the L21 structure with saturation magnetizations over 1200 emu/cm3. Andreev reflection measurements show that the spin polarization is as high as 80% in samples sputtered on unheated MgO (100) substrates and annealed at high temperatures. However, the spin polarization is considerably smaller in samples deposited on heated substrates.

ContributorsVahidi, Mahmoud (Author) / Gifford, Jessica (Author) / Zhang, Shengke (Author) / Krishnamurthy, S. (Author) / Yu, Z. G. (Author) / Lei, Yu (Author) / Huang, Mengchu (Author) / Youngbull, Cody (Author) / Chen, Tingyong (Author) / Newman, Nathan (Author) / Ira A. Fulton Schools of Engineering (Contributor)
Created2014-04-15
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Throughout history, various civilizations developed methodologies for the collection and disposal of human waste. The methodologies throughout the centuries have been characterized by technological peaks on the one hand, and by the disappearance of the technologies and their reappearance on the other. The purpose of this article is to trace

Throughout history, various civilizations developed methodologies for the collection and disposal of human waste. The methodologies throughout the centuries have been characterized by technological peaks on the one hand, and by the disappearance of the technologies and their reappearance on the other. The purpose of this article is to trace the development of sewage collection and transport with an emphasis on toilets in ancient civilizations. Evolution of the major achievements in the scientific fields of sanitation with emphasis on the lavatory (or toilets) technologies through the centuries up to the present are presented. Valuable insights into ancient wastewater technologies and management with their apparent characteristics of durability, adaptability to the environment, and sustainability are provided. Gradual steps improved the engineering results until the establishment of the contemporary toilet system, which provides a combined solution for flushing, odor control, and the sanitation of sewerage. Even though the lack of proper toilet facilities for a great percentage of the present day global population is an embarrassing fact, the worldwide efforts through millennia for the acquisition of a well-engineered toilet were connected to the cultural level of each period.

ContributorsAntoniou, Georgios P. (Author) / De Feo, Giovanni (Author) / Fardin, Franz (Author) / Tamburrino, Aldo (Author) / Khan, Saifullah (Author) / Tie, Fang (Author) / Reklaityte, Ieva (Author) / Kanetaki, Eleni (Author) / Zheng, Xiao Yun (Author) / Mays, Larry (Author) / Angelakis, Andreas N. (Author) / Ira A. Fulton Schools of Engineering (Contributor)
Created2016-08-13
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Urban land–atmosphere interactions can be captured by numerical modeling framework with coupled land surface and atmospheric processes, while the model performance depends largely on accurate input parameters. In this study, we use an advanced stochastic approach to quantify parameter uncertainty and model sensitivity of a coupled numerical framework for urban

Urban land–atmosphere interactions can be captured by numerical modeling framework with coupled land surface and atmospheric processes, while the model performance depends largely on accurate input parameters. In this study, we use an advanced stochastic approach to quantify parameter uncertainty and model sensitivity of a coupled numerical framework for urban land–atmosphere interactions. It is found that the development of urban boundary layer is highly sensitive to surface characteristics of built terrains. Changes of both urban land use and geometry impose significant impact on the overlying urban boundary layer dynamics through modification on bottom boundary conditions, i.e., by altering surface energy partitioning and surface aerodynamic resistance, respectively. Hydrothermal properties of conventional and green roofs have different impacts on atmospheric dynamics due to different surface energy partitioning mechanisms. Urban geometry (represented by the canyon aspect ratio), however, has a significant nonlinear impact on boundary layer structure and temperature. Besides, managing rooftop roughness provides an alternative option to change the boundary layer thermal state through modification of the vertical turbulent transport. The sensitivity analysis deepens our insight into the fundamental physics of urban land–atmosphere interactions and provides useful guidance for urban planning under challenges of changing climate and continuous global urbanization.

ContributorsSong, Jiyun (Author) / Wang, Zhi-Hua (Author) / Ira A. Fulton Schools of Engineering (Contributor)
Created2016-05-24
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Physical fitness has been long associated with maintenance and improvement of motor performance as we age. In particular, measures of psychomotor speed and motor dexterity tend to be higher in physically fit aging adults as compared to their sedentary counterparts. Using functional magnetic resonance imaging (fMRI) and transcranial magnetic stimulation

Physical fitness has been long associated with maintenance and improvement of motor performance as we age. In particular, measures of psychomotor speed and motor dexterity tend to be higher in physically fit aging adults as compared to their sedentary counterparts. Using functional magnetic resonance imaging (fMRI) and transcranial magnetic stimulation (TMS), we explored the patterns of neural activity that may, in part, account for differences between individuals of varying physical fitness levels. In this study, we enrolled both sedentary and physically fit middle age (40–60) and younger (18–30) adults and measured upper extremity motor performance during behavioral testing. In a follow-up session, we employed TMS and fMRI to assess levels of interhemispheric communication during unimanual tasks. Results show that increased physical fitness is associated with better upper extremity motor performance on distal dexterity assessments and increased levels of interhemispheric inhibition in middle age adults. Further, the functional correlates of changes of ipsilateral activity appears to be restricted to the aging process as younger adults of varying fitness levels do not differ in hemispheric patterns of activity or motor performance. We conclude that sedentary aging confers a loss of interhemispheric inhibition that is deleterious to some aspects of motor function, as early as midlife, but these changes can be mediated by chronic engagement in aerobic exercise.

ContributorsMcGregor, Keith M. (Author) / Nocera, Joe R. (Author) / Sudhyadhom, Atchar (Author) / Patten, Carolynn (Author) / Manini, Todd M. (Author) / Kleim, Jeffrey (Author) / Crosson, Bruce (Author) / Butler, Andrew J. (Author) / Ira A. Fulton Schools of Engineering (Contributor)
Created2013-10-30
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Enhancement algorithms are typically applied to video content to increase their appeal to viewers. Such algorithms are readily available in the literature and are already widely applied in, for example, commercially available TVs. On the contrary, not much research has been done on enhancing stereoscopic 3D video content. In this

Enhancement algorithms are typically applied to video content to increase their appeal to viewers. Such algorithms are readily available in the literature and are already widely applied in, for example, commercially available TVs. On the contrary, not much research has been done on enhancing stereoscopic 3D video content. In this paper, we present research focused on the effect of applying enhancement algorithms used for 2D content on 3D side-by-side content. We evaluate both offline enhancement of video content based on proprietary enhancement algorithms and real-time enhancement in the TVs. This is done using stereoscopic TVs with active shutter glasses, viewed both in their 2D and 3D viewing mode. The results of this research show that 2D enhancement algorithms are a viable first approach to enhance 3D content. In addition to video quality degradation due to the loss of spatial resolution as a consequence of the 3D video format, brightness reduction inherent to polarized or shutter glasses similarly degrades video quality. We illustrate the benefit of providing brightness enhancement for stereoscopic displays.

ContributorsWu, Sin Lin (Author) / Caviedes, Jorge E. (Author) / Karam, Lina (Author) / Heynderickx, Ingrid (Author) / Ira A. Fulton Schools of Engineering (Contributor)
Created2014-06-19
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A number of emerging dynamic traffic analysis applications, such as regional or statewide traffic assignment, require a theoretically rigorous and computationally efficient model to describe the propagation and dissipation of system congestion with bottleneck capacity constraints. An open-source light-weight dynamic traffic assignment (DTA) package, namely DTALite, has been developed to

A number of emerging dynamic traffic analysis applications, such as regional or statewide traffic assignment, require a theoretically rigorous and computationally efficient model to describe the propagation and dissipation of system congestion with bottleneck capacity constraints. An open-source light-weight dynamic traffic assignment (DTA) package, namely DTALite, has been developed to allow a rapid utilization of advanced dynamic traffic analysis capabilities. This paper describes its three major modeling components: (1) a light-weight dynamic network loading simulator that embeds Newell’s simplified kinematic wave model; (2) a mesoscopic agent-based DTA procedure to incorporate driver’s heterogeneity; and (3) an integrated traffic assignment and origin–destination demand calibration system that can iteratively adjust path flow volume and distribution to match the observed traffic counts. A number of real-world test cases are described to demonstrate the effectiveness and performance of the proposed models under different network and data availability conditions.

ContributorsZhou, Xuesong (Author) / Taylor, Jeffrey (Author) / Ira A. Fulton Schools of Engineering (Contributor)
Created2014-10-01