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- Genre: Masters Thesis
- Creators: Arizona State University
Description
Land use change driven by human population expansion continues to influence
the integrity and configuration of riparian corridors worldwide. Wildlife viability in semi-arid regions depend heavily on the connectivity of riparian corridors, since water is the primary limiting resource. The Madrean Archipelago in northern Mexico and southwestern United States (US) is a biodiversity hotspot that supports imperiled wildlife like jaguar (Panthera onca) and ocelot (Leopardus pardalis). Recent and ongoing infrastructure developments in the historically understudied US-México borderlands region, such as the border wall and expansion of Federal Highway 2, are altering wildlife movement and disconnecting essential habitat.
I used wildlife cameras to assess species occupancy, abundance, and related habitat variables affecting the use of washes as corridors for mammals in semi-arid Los Ojos (LO), a private ranch within a 530 km2 priority conservation area in Sonora, México located south of the border and Federal Highway 2. From October 2018 to April 2019, I deployed 21 wildlife cameras in five different riparian corridors within LO. I used single- season occupancy models and Royal Nichols abundance models to explore the relationship between habitat variables and use of riparian corridors by mammal communities of conservation concern within this region.
Twenty-one mammal species were recorded in the study area, including American black bear (Ursus americanus), white-tailed deer (Odocoileus virginianus) and the first sighting of jaguar (Panthera onca) in this region in 25 years. For the 11 medium- and large-bodied mammals recorded, habitat variables related to perennial river characteristics (distance to river, weekly water, and site width) and remoteness (distance from highway, elevation, and NDVI) were important for occupancy, but the direction of the relationship varied by species. For commonly observed species such as mountain lion (Puma concolor) and white-nosed coati (Nasua narica), topographic variety was highly informative for species abundance. These results highlight the importance of habitat diversity when identifying corridors for future protection to conserve wildlife communities in semi-arid regions. Additionally, this study provides robust evidence in support of mitigation measures (e.g. funnel fencing, over- or under- passes) along Federal Highway 2, and other barriers such as the border wall, to facilitate wildlife connectivity.
the integrity and configuration of riparian corridors worldwide. Wildlife viability in semi-arid regions depend heavily on the connectivity of riparian corridors, since water is the primary limiting resource. The Madrean Archipelago in northern Mexico and southwestern United States (US) is a biodiversity hotspot that supports imperiled wildlife like jaguar (Panthera onca) and ocelot (Leopardus pardalis). Recent and ongoing infrastructure developments in the historically understudied US-México borderlands region, such as the border wall and expansion of Federal Highway 2, are altering wildlife movement and disconnecting essential habitat.
I used wildlife cameras to assess species occupancy, abundance, and related habitat variables affecting the use of washes as corridors for mammals in semi-arid Los Ojos (LO), a private ranch within a 530 km2 priority conservation area in Sonora, México located south of the border and Federal Highway 2. From October 2018 to April 2019, I deployed 21 wildlife cameras in five different riparian corridors within LO. I used single- season occupancy models and Royal Nichols abundance models to explore the relationship between habitat variables and use of riparian corridors by mammal communities of conservation concern within this region.
Twenty-one mammal species were recorded in the study area, including American black bear (Ursus americanus), white-tailed deer (Odocoileus virginianus) and the first sighting of jaguar (Panthera onca) in this region in 25 years. For the 11 medium- and large-bodied mammals recorded, habitat variables related to perennial river characteristics (distance to river, weekly water, and site width) and remoteness (distance from highway, elevation, and NDVI) were important for occupancy, but the direction of the relationship varied by species. For commonly observed species such as mountain lion (Puma concolor) and white-nosed coati (Nasua narica), topographic variety was highly informative for species abundance. These results highlight the importance of habitat diversity when identifying corridors for future protection to conserve wildlife communities in semi-arid regions. Additionally, this study provides robust evidence in support of mitigation measures (e.g. funnel fencing, over- or under- passes) along Federal Highway 2, and other barriers such as the border wall, to facilitate wildlife connectivity.
ContributorsRagan, Kinley (Author) / Hall, Sharon J (Thesis advisor) / Schipper, Jan (Thesis advisor) / Bateman, Heather L (Committee member) / Arizona State University (Publisher)
Created2020
Description
Coccidioidomycosis or Valley Fever (VF) is an emerging fungal respiratory infection endemic to the southwest region of the United States, and parts of Mexico, Central and South America. Satellite cases have also been reported in Washington and Oregon. It is estimated that in Maricopa County alone, VF accounts for 10-30% of community-acquired pneumonia. Difficulty in diagnosis is largely attributed to lack of antibody reactivity to antigens used in diagnosis, especially early in disease. Serological detection of VF employs mycelial-phase culture filtrates as antigen. While culture filtrates are thought to provide the most specific diagnostic antigen, preparation includes the growth of large volume Coccidioides cultures which require employment of extensive safety precautions in a BSL3 setting. An additional concern with use of culture filtrates as an antigen source is batch variability, as expression of immunogenic proteins within each lot are variable. To address safety and batch variability concerns, this thesis proposes the use of recombinant Coccidioides proteins as a consistent and reliable antigen source. For the purpose of this study, I expressed known antigenic Coccidioides proteins in a eukaryotic, recombinant protein expression system. Recombinant endochitinase-1 (rCTS1) and recombinant heat-labile antigen (rHL-Ag) were evaluated for serologic reactivity by ELISA, using a sample set of 55 known serologically positive and 55 known negative human sera specimens, previously tested in Mayo Clinic Arizona (MCA) serologic laboratories. Evaluation by ELISA demonstrated 94.55% sensitivity and 92.72% specificity using combined rCTS1 and rHL-Ag as an antigen source, indicating promising diagnostic utility.
ContributorsRoeder, Alexa Jordan (Author) / Lake, Douglas (Thesis advisor) / Grys, Thomas (Committee member) / Bean, Heather (Committee member) / Arizona State University (Publisher)
Created2020
Description
Clickers are a common part of many classrooms across universities. Despite the widespread use, education researchers disagree about how to best use these tools and about how they impact students. Prior work has shown possible differential impacts of clickers based on demographic indicators, such as age, gender, and ethnicity. To explore these topics a two-part project was designed. First, a literature review was completed focusing on past and current clicker practices and the research surrounding them. Second, original data, stratified by demographic characteristics, was collected on student perceptions of clickers. The literature review revealed that not all uses of clickers are created equal. Instructors in higher education first introduced clickers to enhance traditional pedagogies by simplifying common classroom tasks (e.g. grading, attendance, feedback collection). More recently, instructors pair clickers and novel pedagogies. A review of the identified benefits and drawbacks for students and instructors is provided for both approaches. Instructors can use different combinations of technological competency and pedagogical content knowledge that lead to four main outcomes. When instructors have both technological competency and pedagogical content knowledge, all the involved parties, students and instructors, benefit. When instructors have technological competency but lack pedagogical content knowledge, instructors are the main benefactors. When instructors have pedagogical content knowledge alone, students can benefit, but usefulness to the instructor decreases. When instructors have neither technological competency nor pedagogical content knowledge, no party benefits. Beyond these findings, recommendations are provided for future clicker research. Second, the review highlighted that clickers may have a differential impact on students of different demographic groups. To explore this dynamic, an original study on student views of clickers, which included demographic data, was conducted. The original study does not find significantly different enthusiasm for clickers by demographic group, unlike prior studies that explored some of these relationships. However, white students and male students are overrepresented in the group that does not enjoy clickers. This conclusion is supported by visual observations from the means of the demographic groups. Overall, based on the review of the literature and original research, if instructors pair clickers with validated pedagogies, and if researchers continue to study clicker classrooms, including which students like and benefit from clickers, clickers may continue to be a valuable educational technology.
ContributorsChambers, Elijah Lorenzo (Author) / Henderson, Joesph (Thesis advisor) / Ellison, Karin (Thesis advisor) / Chew, Matthew (Committee member) / Arizona State University (Publisher)
Created2020
Description
ABSTRACT
Historically, Life Cycle Assessments (LCA) guided companies to make better decisions to improve the environmental impacts of their products. However, as new Circular Economy (CE) tools emerge, the usefulness of LCA in assessing linear products grow more and more obsolete. Research Question: How do LCA-based tools account for reuse/multiple life cycles of products verses CE-based tools?
The Kaiteki Innovation Framework (KIF) was used to address the question of circularity of two packaging materials using an Environmental LCA to populate its 12 CE dimensions. Any gaps were evaluated with 2 LCA- based and 2 CE-based tools to see which could address the leftover CE dimensions.
Results showed that to complete the KIF template, LCA data required one of the LCA-based tools: Social Life Cycle Assessment (SLCA) and both CE-based tools: Circular Transition Indicators (CTI) and Material Circularity Indicator (MCI) to supplement gaps in the KIF. The LCA addressed 5 of the KIF dimensions: Innovation Category Name, Description, GHG Impact, Other Environmental Impacts, and Value Chain Position. 3 analytical tools addressed 5 more:: Effect on Circularity, Social Impacts, Enabling Technologies, Tier 2 and 3 Requirements, and Value Chain Synergies. None of the tools could address the KIF Dimensions: State of Development or Scale Requirements. All in all, the KIF required both LCA-based and CE-based tools to cover social and socio-economic impacts from a cradle-to-cradle perspective with multiple circular loops in mind. These results can help in the research and development of innovative, circular products that can lead to a more environmentally preferred future.
Historically, Life Cycle Assessments (LCA) guided companies to make better decisions to improve the environmental impacts of their products. However, as new Circular Economy (CE) tools emerge, the usefulness of LCA in assessing linear products grow more and more obsolete. Research Question: How do LCA-based tools account for reuse/multiple life cycles of products verses CE-based tools?
The Kaiteki Innovation Framework (KIF) was used to address the question of circularity of two packaging materials using an Environmental LCA to populate its 12 CE dimensions. Any gaps were evaluated with 2 LCA- based and 2 CE-based tools to see which could address the leftover CE dimensions.
Results showed that to complete the KIF template, LCA data required one of the LCA-based tools: Social Life Cycle Assessment (SLCA) and both CE-based tools: Circular Transition Indicators (CTI) and Material Circularity Indicator (MCI) to supplement gaps in the KIF. The LCA addressed 5 of the KIF dimensions: Innovation Category Name, Description, GHG Impact, Other Environmental Impacts, and Value Chain Position. 3 analytical tools addressed 5 more:: Effect on Circularity, Social Impacts, Enabling Technologies, Tier 2 and 3 Requirements, and Value Chain Synergies. None of the tools could address the KIF Dimensions: State of Development or Scale Requirements. All in all, the KIF required both LCA-based and CE-based tools to cover social and socio-economic impacts from a cradle-to-cradle perspective with multiple circular loops in mind. These results can help in the research and development of innovative, circular products that can lead to a more environmentally preferred future.
ContributorsDe Los Santos, Andrew John (Author) / Seager, Thomas (Thesis advisor) / Dooley, Kevin (Committee member) / Buch, Rajesh (Committee member) / Arizona State University (Publisher)
Created2020
Description
Transition metal di- and tri-halides (TMH) have recently gathered research attention owing to their intrinsic magnetism all the way down to their two-dimensional limit. 2D magnets, despite being a crucial component for realizing van der Waals heterostructures and devices with various functionalities, were not experimentally proven until very recently in 2017. The findings opened up enormous possibilities for studying new quantum states of matter that can enable potential to design spintronic, magnetic memory, data storage, sensing, and topological devices. However, practical applications in modern technologies demand materials with various physical and chemical properties such as electronic, optical, structural, catalytic, magnetic etc., which cannot be found within single material systems. Considering that compositional modifications in 2D systems lead to significant changes in properties due to the high anisotropy inherent to their crystallographic structure, this work focuses on alloying of TMH compounds to explore the potentials for tuning their properties. In this thesis, the ternary cation alloys of Co(1-x)Ni(x)Cl(2) and Mo(1-x)Cr(x)Cl(3) were synthesized via chemical vapor transport at a various stoichiometry. Their compositional, structural, and magnetic properties were studied using Energy Dispersive Spectroscopy, Raman Spectroscopy, X-Ray Diffraction, and Vibrating Sample Magnetometry. It was found that completely miscible ternary alloys of Co(1-x)Ni(x)Cl(2) show an increasing Néel temperature with nickel concentration. The Mo(1-x)Cr(x)Cl(3) alloy shows potential magnetic phase changes induced by the incorporation of molybdenum species within the host CrCl3 lattice. Magnetic measurements give insight into potential antiferromagnetic to ferromagnetic transition with molybdenum incorporation, accompanied by a shift in the magnetic easy-axis from parallel to perpendicular. Phase separation was found in the Fe(1-x)Cr(x)Cl(3) ternary alloy indicating that crystallographic structure compatibility plays an essential role in determining the miscibility of two parent compounds. Alloying across two similar (TMH) compounds appears to yield predictable results in properties as in the case of Co(1-x)Ni(x)Cl(2), while more exotic transitions, as in the case of Mo(1-x)Cr(x)Cl(3), can emerge by alloying dissimilar compounds. When dissimilarity reaches a certain limit, as with Fe(1-x)Cr(x)Cl(3), phase separation becomes more favorable. Future studies focusing on magnetic and structural phase transitions will reveal more insight into the effect of alloying in these TMH systems.
ContributorsKolari, Pranvera (Author) / Tongay, Sefaattin (Thesis advisor) / Jiao, Yang (Committee member) / Muhich, Christopher (Committee member) / Arizona State University (Publisher)
Created2020
Description
Soil impacts from crude oil spills in the United States are regulated at the state level using the analytical group total petroleum hydrocarbons (TPH) as the primary regulatory metric. TPH concentration in soil is used to enforce and verify compliance with cleanup levels (CULs). While there are significant differences between states concerning TPH CULs based on land use, most states enforce an action level of 100 mg TPH kg⁻1. The most common standard method for quantification of TPH in soils is EPA Method 8015, which entails extraction of petroleum hydrocarbons by dichloromethane and analysis by gas chromatography with flame ionization detection (GC-FID). Using Method 8015 or similar methods, TPH is defined as the cumulative area of all peaks within a defined analytical range (typically C6-C36). A limitation of TPH standard methods is their lack of specificity for petroleum hydrocarbons (i.e., these methods can also detect and quantify compounds that are an inherent part of natural soil organic matter (SOM)). While the interference of SOM compounds with TPH quantification is known, documentation regarding the extent of this interference is almost absent in the peer-reviewed literature. In this thesis, 15 biogeochemically-diverse soils, uncontaminated by crude oil hydrocarbons, were sampled from geographically diverse locations and investigated in an effort to determine the concentration of SOM that registers as TPH. Solvent extractions using dichloromethane or n-pentane in conjunction with GC-FID analysis showed that all soils had detectable concentrations of TPH ranging from 160 to 2700 mg TPH kg–1. Based on the results from this study, it can be concluded that many soils have a higher apparent TPH concentration than most US state-level CULs. In addition, the data from this study show that soils with a lower pH and/or a higher organic carbon content also have higher concentrations of apparent TPH. Findings from this thesis show that uncontaminated soils have a significant apparent TPH concentration that would be considered part of the TPH originating from contamination and should be accounted for in the regulatory landscape.
ContributorsSundar, Skanda Vishnu (Author) / Delgado, Anca G (Thesis advisor) / Dahlen, Paul (Committee member) / Sihota, Natasha (Committee member) / Arizona State University (Publisher)
Created2020
Description
Background: Children’s fruit and vegetable consumption in the United States is lower than recommended. School lunch is an opportunity for students to be exposed to fruits and vegetables and potentially increase their daily intake. The purpose of this study is to examine the relationship between tray color and fruit and vegetable selection, consumption, and waste at lunch.
Methods: Study participants (n=1469) were elementary and middle school students who ate school lunch on the day of data collection. Photographs and weights (to nearest 2 g) were taken of fruits and vegetables on students’ trays before and after lunch. Trained research assistants viewed photographs and sorted trays into variable categories: color of main tray, presence/absence of secondary fruit/vegetable container, and color of secondary fruit/vegetable container. Fruit and vegetable selection, consumption, and waste were calculated using tray weights. Negative binomial regression models adjusted for gender, grade level, race/ethnicity, free/reduced price lunch status, and within-school similarities were used to examine relationships between tray color and fruit and vegetable selection, consumption, and waste.
Results: Findings indicated that students with a light tray selected (IRR= 0.44), consumed (IRR=0.73) and wasted (IRR=0.81) less fruit and vegetables. Students without a secondary fruit/vegetable container selected (IRR=0.66) and consumed (IRR=0.49) less fruit and vegetables compared to those with a secondary container. Light or clear secondary fruit and vegetable containers were related to increased selection (IRR=2.06 light, 2.30 clear) and consumption (IRR=1.95 light, 2.78 clear) compared to dark secondary containers, while light secondary containers were related to decreased waste (IRR= 0.57).
Conclusion: Tray color may influence fruit and vegetable selection, consumption, and waste among students eating school lunch. Further research is needed to determine if there is a cause and effect relationship. If so, adjusting container colors may be a practical intervention for schools hoping to increase fruit and vegetable intake among students.
Methods: Study participants (n=1469) were elementary and middle school students who ate school lunch on the day of data collection. Photographs and weights (to nearest 2 g) were taken of fruits and vegetables on students’ trays before and after lunch. Trained research assistants viewed photographs and sorted trays into variable categories: color of main tray, presence/absence of secondary fruit/vegetable container, and color of secondary fruit/vegetable container. Fruit and vegetable selection, consumption, and waste were calculated using tray weights. Negative binomial regression models adjusted for gender, grade level, race/ethnicity, free/reduced price lunch status, and within-school similarities were used to examine relationships between tray color and fruit and vegetable selection, consumption, and waste.
Results: Findings indicated that students with a light tray selected (IRR= 0.44), consumed (IRR=0.73) and wasted (IRR=0.81) less fruit and vegetables. Students without a secondary fruit/vegetable container selected (IRR=0.66) and consumed (IRR=0.49) less fruit and vegetables compared to those with a secondary container. Light or clear secondary fruit and vegetable containers were related to increased selection (IRR=2.06 light, 2.30 clear) and consumption (IRR=1.95 light, 2.78 clear) compared to dark secondary containers, while light secondary containers were related to decreased waste (IRR= 0.57).
Conclusion: Tray color may influence fruit and vegetable selection, consumption, and waste among students eating school lunch. Further research is needed to determine if there is a cause and effect relationship. If so, adjusting container colors may be a practical intervention for schools hoping to increase fruit and vegetable intake among students.
ContributorsWeight, Raquelle (Author) / Bruening, Meg (Thesis advisor) / Adams, Marc (Committee member) / Martinelli, Sarah (Committee member) / Arizona State University (Publisher)
Created2020
Description
Rock traits (grain size, shape, orientation) are fundamental indicators of geologic processes including geomorphology and active tectonics. Fault zone evolution, fault slip rates, and earthquake timing are informed by examinations of discontinuities in the displacements of the Earth surface at fault scarps. Fault scarps indicate the structure of fault zones fans, relay ramps, and double faults, as well as the surface process response to the deformation and can thus indicate the activity of the fault zone and its potential hazard. “Rocky” fault scarps are unusual because they share characteristics of bedrock and alluvial fault scarps. The Volcanic Tablelands in Bishop, CA offer a natural laboratory with an array of rocky fault scarps. Machine learning mask-Region Convolutional Neural Network segments an orthophoto to identify individual particles along a specific rocky fault scarp. The resulting rock traits for thousands of particles along the scarp are used to develop conceptual models for rocky scarp geomorphology and evolution. In addition to rocky scarp classification, these tools may be useful in many sedimentary and volcanological applications for particle mapping and characterization.
ContributorsScott, Tyler (Author) / Arrowsmith, Ramon (Thesis advisor) / Das, Jnaneshwar (Committee member) / DeVecchio, Duane (Committee member) / Arizona State University (Publisher)
Created2020
Description
Regulation of transcription initiation is a critical factor in the emergence of diverse biological phenotypes, including the development of multiple cell types from a single genotype, the ability of organisms to respond to environmental cues, and the rise of heritable diseases. Transcription initiation is regulated in large part by promoter regions of DNA. The identification and characterization of cis-regulatory regions, and understanding how these sequences differ across species, is a question of interest in evolution. To address this topic, I used the model organism Daphnia pulex, a well-characterized microcrustacean with an annotated genome sequence and selected a distribution of well-defined populations geographically located throughout the Midwestern US, Oregon, and Canada. Using isolated total RNA from adult, female Daphnia originating from the selected populations as well as a related taxon, Daphnia pulicaria (200,000 years diverged from D. pulex), I identified an average of over 14,000 (n=14,471) promoter regions using a novel transcription start site (TSS) profiling method, STRIPE-seq. Through the identification of sequence architecture, promoter class, conservation, and transcription start region (TSR) width, of cis-regulatory regions across the aforementioned Daphnia populations, I constructed a system for the study of promoter evolution, enabling a robust interpretation of promoter evolution in the context of the population-genetic environment. The methodology presented, coupled with the generated dataset, provides a foundation for the study of the evolution of promoters across both species and populations.
ContributorsSnyder, Shannon (Author) / Lynch, Michael (Thesis advisor) / Harris, Robin (Committee member) / Raborn, Randolph T (Committee member) / Wideman, Jeremy (Committee member) / Arizona State University (Publisher)
Created2020
Description
“Airborne dispersal of microorganisms influences their biogeography, gene flow, atmospheric processes, human health and transmission of pathogens that affect humans, plants and animals” (Alsved et al., 2018). Many airborne pathogens cause diseases, such as Legionnaires disease, which is a type of pneumonia caused due to Legionella. Since the first report of a Legionella outbreak in 1976, or reports of Non – tuberculous Mycobacterium (NTM) outbreaks in hospital and healthcare settings by the CDC, it is significant to understand the behavior, occurrence and persistence of opportunistic pathogenic aerosols in the atmosphere. This study comprises a literature review and experimental work on airborne dispersion of 4 microorganisms – E. coli, Legionella pneumophila, Mycobacterium phlei and bacteriophage P22. The literature review summarizes their characteristics, their potential sources, disease outbreaks, collection and detection methodologies, environmental conditions for their growth and survival and few recommendations for reducing potential outbreaks. Aerosolization of each of these microorganisms was carried out separately in a closed environment using a spray gun and a nebulizer. The spraying time consisted of 1 sec, 5secs or 10secs, from one end of a chamber, and collecting air sample from the other end of the chamber, using a microbial air sampler. The air sample collection was performed to understand their transport, dispersion and reduction in air. Legionella showed a log reduction of ~4 using spray gun and ≤0.6 using nebulizer, whereas Mycobacterium showed a log reduction of ~4.5 using spray gun and ≤0.7 using nebulizer, respectively. Bacteriophage P22 on the other hand showed a 4 log reduction using spray gun and ≤1.4 using the nebulizer. This shows that aerosolization of microorganisms depends on its cell structure, size and survivability. Legionella follows the air – to – water transmission route, and Mycobacterium is hydrophobic, due to which their aerosols are more stable and active, than E. coli. Other environmental properties such as relative humidity and temperature impact the transport and dispersion of microorganisms in air.
The experiments in this study validated the aerosolization and transport of Legionella, Mycobacterium and bacteriophage P22 in a closed environment over time. In general, microbial concentration collected in air increased with aerosolization time of the test water. On the other hand, their concentration significantly decreased as elapsed time progressed after aerosolization, due to settling effect of larger particles and potential reduction due to inactivation of bacterial and viruses in the air.
The experiments in this study validated the aerosolization and transport of Legionella, Mycobacterium and bacteriophage P22 in a closed environment over time. In general, microbial concentration collected in air increased with aerosolization time of the test water. On the other hand, their concentration significantly decreased as elapsed time progressed after aerosolization, due to settling effect of larger particles and potential reduction due to inactivation of bacterial and viruses in the air.
ContributorsAmit, Aditi Ashwini (Author) / Abbaszadegan, Morteza (Thesis advisor) / Fox, Peter (Committee member) / Alum, Absar (Committee member) / Arizona State University (Publisher)
Created2020