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Description
Imagine that we have a piece of matter that can change its physical properties like its shape, density, conductivity, or color in a programmable fashion based on either user input or autonomous sensing. This is the vision behind what is commonly known as programmable matter. Envisioning systems of nano-sensors devices,

Imagine that we have a piece of matter that can change its physical properties like its shape, density, conductivity, or color in a programmable fashion based on either user input or autonomous sensing. This is the vision behind what is commonly known as programmable matter. Envisioning systems of nano-sensors devices, programmable matter consists of systems of simple computational elements, called particles, that can establish and release bonds, compute, and can actively move in a self-organized way. In this dissertation the feasibility of solving fundamental problems relevant for programmable matter is investigated. As a model for such self-organizing particle systems (SOPS), the geometric amoebot model is introduced. In this model, particles only have local information and have modest computational power. They achieve locomotion by expanding and contracting, which resembles the behavior of amoeba. Under this model, efficient local-control algorithms for the leader election problem in SOPS are presented. As a central problem for programmable matter, shape formation problems are then studied. The limitations of solving the leader election problem and the shape formation problem on a more general version of the amoebot model are also discussed. The \smart paint" problem is also studied which aims at having the particles self-organize in order to uniformly coat the surface of an object of arbitrary shape and size, forming multiple coating layers if necessary. A Universal Coating algorithm is presented and shown to be asymptotically worst-case optimal both in terms of time with high probability and work. In particular, the algorithm always terminates within a linear number of rounds with high probability. A linear lower bound on the competitive gap between fully local coating algorithms and coating algorithms that rely on global information is presented, which implies that the proposed algorithm is also optimal in a competitive sense. Simulation results show that the competitive ratio of the proposed algorithm may be better than linear in practice. Developed algorithms utilize only local control, require only constant-size memory particles, and are asymptotically optimal in terms of the total number of particle movements needed to reach the desired shape configuration.
ContributorsDerakhshandeh, Zahra (Author) / Richa, Andrea (Thesis advisor) / Sen, Arunabha (Thesis advisor) / Xue, Guoliang (Committee member) / Scheideler, Christian (Committee member) / Arizona State University (Publisher)
Created2017
Description
Major Depression, clinically called Major Depressive Disorder, is a mood disorder that affects about one eighth of population in US and is projected to be the second leading cause of disability in the world by the year 2020. Recent advances in biotechnology have enabled us to

Major Depression, clinically called Major Depressive Disorder, is a mood disorder that affects about one eighth of population in US and is projected to be the second leading cause of disability in the world by the year 2020. Recent advances in biotechnology have enabled us to collect a great variety of data which could potentially offer us a deeper understanding of the disorder as well as advancing personalized medicine.

This dissertation focuses on developing methods for three different aspects of predictive analytics related to the disorder: automatic diagnosis, prognosis, and prediction of long-term treatment outcome. The data used for each task have their specific characteristics and demonstrate unique problems. Automatic diagnosis of melancholic depression is made on the basis of metabolic profiles and micro-array gene expression profiles where the presence of missing values and strong empirical correlation between the variables is not unusual. To deal with these problems, a method of generating a representative set of features is proposed. Prognosis is made on data collected from rating scales and questionnaires which consist mainly of categorical and ordinal variables and thus favor decision tree based predictive models. Decision tree models are known for the notorious problem of overfitting. A decision tree pruning method that overcomes the shortcomings of a greedy nature and reliance on heuristics inherent in traditional decision tree pruning approaches is proposed. The method is further extended to prune Gradient Boosting Decision Tree and tested on the task of prognosis of treatment outcome. Follow-up studies evaluating the long-term effect of the treatments on patients usually measure patients' depressive symptom severity monthly, resulting in the actual time of relapse upper bounded by the observed time of relapse. To resolve such uncertainty in response, a general loss function where the hypothesis could take different forms is proposed to predict the risk of relapse in situations where only an interval for time of relapse can be derived from the observed data.
ContributorsNie, Zhi (Author) / Ye, Jieping (Thesis advisor) / He, Jingrui (Thesis advisor) / Li, Baoxin (Committee member) / Xue, Guoliang (Committee member) / Li, Jing (Committee member) / Arizona State University (Publisher)
Created2017
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Description
Imaging genetics is an emerging and promising technique that investigates how genetic variations affect brain development, structure, and function. By exploiting disorder-related neuroimaging phenotypes, this class of studies provides a novel direction to reveal and understand the complex genetic mechanisms. Oftentimes, imaging genetics studies are challenging due to the relatively

Imaging genetics is an emerging and promising technique that investigates how genetic variations affect brain development, structure, and function. By exploiting disorder-related neuroimaging phenotypes, this class of studies provides a novel direction to reveal and understand the complex genetic mechanisms. Oftentimes, imaging genetics studies are challenging due to the relatively small number of subjects but extremely high-dimensionality of both imaging data and genomic data. In this dissertation, I carry on my research on imaging genetics with particular focuses on two tasks---building predictive models between neuroimaging data and genomic data, and identifying disorder-related genetic risk factors through image-based biomarkers. To this end, I consider a suite of structured sparse methods---that can produce interpretable models and are robust to overfitting---for imaging genetics. With carefully-designed sparse-inducing regularizers, different biological priors are incorporated into learning models. More specifically, in the Allen brain image--gene expression study, I adopt an advanced sparse coding approach for image feature extraction and employ a multi-task learning approach for multi-class annotation. Moreover, I propose a label structured-based two-stage learning framework, which utilizes the hierarchical structure among labels, for multi-label annotation. In the Alzheimer's disease neuroimaging initiative (ADNI) imaging genetics study, I employ Lasso together with EDPP (enhanced dual polytope projections) screening rules to fast identify Alzheimer's disease risk SNPs. I also adopt the tree-structured group Lasso with MLFre (multi-layer feature reduction) screening rules to incorporate linkage disequilibrium information into modeling. Moreover, I propose a novel absolute fused Lasso model for ADNI imaging genetics. This method utilizes SNP spatial structure and is robust to the choice of reference alleles of genotype coding. In addition, I propose a two-level structured sparse model that incorporates gene-level networks through a graph penalty into SNP-level model construction. Lastly, I explore a convolutional neural network approach for accurate predicting Alzheimer's disease related imaging phenotypes. Experimental results on real-world imaging genetics applications demonstrate the efficiency and effectiveness of the proposed structured sparse methods.
ContributorsYang, Tao (Author) / Ye, Jieping (Thesis advisor) / Xue, Guoliang (Thesis advisor) / He, Jingrui (Committee member) / Li, Baoxin (Committee member) / Li, Jing (Committee member) / Arizona State University (Publisher)
Created2017
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Description
Wireless communication technologies have been playing an important role in modern society. Due to its inherent mobility property, wireless networks are more vulnerable to passive attacks than traditional wired networks. Anonymity, as an important issue in mobile network environment, serves as the first topic that leads to all the research

Wireless communication technologies have been playing an important role in modern society. Due to its inherent mobility property, wireless networks are more vulnerable to passive attacks than traditional wired networks. Anonymity, as an important issue in mobile network environment, serves as the first topic that leads to all the research work presented in this manuscript. Specifically, anonymity issue in Mobile Ad hoc Networks (MANETs) is discussed with details as the first section of research.



To thoroughly study on this topic, the presented work approaches it from an attacker's perspective. Under a perfect scenario, all the traffic in a targeted MANET exhibits the communication relations to a passive attacker. However, localization errors pose a significant influence on the accuracy of the derived communication patterns. To handle such issue, a new scheme is proposed to generate super nodes, which represent the activities of user groups in the target MANET. This scheme also helps reduce the scale of monitoring work by grouping users based on their behaviors.



The first part of work on anonymity in MANET leads to the thought on its major cause. The link-based communication pattern is a key contributor to the success of the traffic analysis attack. A natural way to circumvent such issue is to use link-less approaches. Information Centric Networking (ICN) is a typical instance of such kind. Its communication pattern is able to overcome the anonymity issue with MANET. However, it also comes with its own shortcomings. One of them is access control enforcement. To tackle this issue, a new naming scheme for contents transmitted in ICN networks is presented. This scheme is based on a new Attribute-Based Encryption (ABE) algorithm. It enforces access control in ICN with minimum requirements on additional network components.



Following the research work on ABE, an important function, delegation, exhibits a potential security issue. In traditional ABE schemes, Ciphertext-Policy ABE (CP-ABE), a user is able to generate a subset of authentic attribute key components for other users using delegation function. This capability is not monitored or controlled by the trusted third party (TTP) in the cryptosystem. A direct threat caused from this issue is that any user may intentionally or unintentionally lower the standards for attribute assignments. Unauthorized users/attackers may be able to obtain their desired attributes through a delegation party instead of directly from the TTP. As the third part of work presented in this manuscript, a three-level delegation restriction architecture is proposed. Furthermore, a delegation restriction scheme following this architecture is also presented. This scheme allows the TTP to have full control on the delegation function of all its direct users.
ContributorsLi, Bing (Author) / Huang, Dijiang (Thesis advisor) / Xue, Guoliang (Committee member) / Ahn, Gail-Joon (Committee member) / Zhang, Yanchao (Committee member) / Arizona State University (Publisher)
Created2016
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Description
The rapid growth in the high-throughput technologies last few decades makes the manual processing of the generated data to be impracticable. Even worse, the machine learning and data mining techniques seemed to be paralyzed against these massive datasets. High-dimensionality is one of the most common challenges for machine learning and

The rapid growth in the high-throughput technologies last few decades makes the manual processing of the generated data to be impracticable. Even worse, the machine learning and data mining techniques seemed to be paralyzed against these massive datasets. High-dimensionality is one of the most common challenges for machine learning and data mining tasks. Feature selection aims to reduce dimensionality by selecting a small subset of the features that perform at least as good as the full feature set. Generally, the learning performance, e.g. classification accuracy, and algorithm complexity are used to measure the quality of the algorithm. Recently, the stability of feature selection algorithms has gained an increasing attention as a new indicator due to the necessity to select similar subsets of features each time when the algorithm is run on the same dataset even in the presence of a small amount of perturbation. In order to cure the selection stability issue, we should understand the cause of instability first. In this dissertation, we will investigate the causes of instability in high-dimensional datasets using well-known feature selection algorithms. As a result, we found that the stability mostly data-dependent. According to these findings, we propose a framework to improve selection stability by solving these main causes. In particular, we found that data noise greatly impacts the stability and the learning performance as well. So, we proposed to reduce it in order to improve both selection stability and learning performance. However, current noise reduction approaches are not able to distinguish between data noise and variation in samples from different classes. For this reason, we overcome this limitation by using Supervised noise reduction via Low Rank Matrix Approximation, SLRMA for short. The proposed framework has proved to be successful on different types of datasets with high-dimensionality, such as microarrays and images datasets. However, this framework cannot handle unlabeled, hence, we propose Local SVD to overcome this limitation.
ContributorsAlelyani, Salem (Author) / Liu, Huan (Thesis advisor) / Xue, Guoliang (Committee member) / Ye, Jieping (Committee member) / Zhao, Zheng (Committee member) / Arizona State University (Publisher)
Created2013
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Description
While network problems have been addressed using a central administrative domain with a single objective, the devices in most networks are actually not owned by a single entity but by many individual entities. These entities make their decisions independently and selfishly, and maybe cooperate with a small group of other

While network problems have been addressed using a central administrative domain with a single objective, the devices in most networks are actually not owned by a single entity but by many individual entities. These entities make their decisions independently and selfishly, and maybe cooperate with a small group of other entities only when this form of coalition yields a better return. The interaction among multiple independent decision-makers necessitates the use of game theory, including economic notions related to markets and incentives. In this dissertation, we are interested in modeling, analyzing, addressing network problems caused by the selfish behavior of network entities. First, we study how the selfish behavior of network entities affects the system performance while users are competing for limited resource. For this resource allocation domain, we aim to study the selfish routing problem in networks with fair queuing on links, the relay assignment problem in cooperative networks, and the channel allocation problem in wireless networks. Another important aspect of this dissertation is the study of designing efficient mechanisms to incentivize network entities to achieve certain system objective. For this incentive mechanism domain, we aim to motivate wireless devices to serve as relays for cooperative communication, and to recruit smartphones for crowdsourcing. In addition, we apply different game theoretic approaches to problems in security and privacy domain. For this domain, we aim to analyze how a user could defend against a smart jammer, who can quickly learn about the user's transmission power. We also design mechanisms to encourage mobile phone users to participate in location privacy protection, in order to achieve k-anonymity.
ContributorsYang, Dejun (Author) / Xue, Guoliang (Thesis advisor) / Richa, Andrea (Committee member) / Sen, Arunabha (Committee member) / Zhang, Junshan (Committee member) / Arizona State University (Publisher)
Created2013
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Description
Peer-to-peer systems are known to be vulnerable to the Sybil attack. The lack of a central authority allows a malicious user to create many fake identities (called Sybil nodes) pretending to be independent honest nodes. The goal of the malicious user is to influence the system on his/her behalf. In

Peer-to-peer systems are known to be vulnerable to the Sybil attack. The lack of a central authority allows a malicious user to create many fake identities (called Sybil nodes) pretending to be independent honest nodes. The goal of the malicious user is to influence the system on his/her behalf. In order to detect the Sybil nodes and prevent the attack, a reputation system is used for the nodes, built through observing its interactions with its peers. The construction makes every node a part of a distributed authority that keeps records on the reputation and behavior of the nodes. Records of interactions between nodes are broadcast by the interacting nodes and honest reporting proves to be a Nash Equilibrium for correct (non-Sybil) nodes. In this research is argued that in realistic communication schedule scenarios, simple graph-theoretic queries such as the computation of Strongly Connected Components and Densest Subgraphs, help in exposing those nodes most likely to be Sybil, which are then proved to be Sybil or not through a direct test executed by some peers.
ContributorsCárdenas-Haro, José Antonio (Author) / Konjevod, Goran (Thesis advisor) / Richa, Andréa W. (Thesis advisor) / Sen, Arunabha (Committee member) / Xue, Guoliang (Committee member) / Arizona State University (Publisher)
Created2010
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Description
The omnipresent data, growing number of network devices, and evolving attack techniques have been challenging organizations’ security defenses over the past decade. With humongous volumes of logs generated by those network devices, looking for patterns of malicious activities and identifying them in time is growing beyond the capabilities of their

The omnipresent data, growing number of network devices, and evolving attack techniques have been challenging organizations’ security defenses over the past decade. With humongous volumes of logs generated by those network devices, looking for patterns of malicious activities and identifying them in time is growing beyond the capabilities of their defense systems. Deep Learning, a subset of Machine Learning (ML) and Artificial Intelligence (AI), fills in this gapwith its ability to learn from huge amounts of data, and improve its performance as the data it learns from increases. In this dissertation, I bring forward security issues pertaining to two top threats that most organizations fear, Advanced Persistent Threat (APT), and Distributed Denial of Service (DDoS), along with deep learning models built towards addressing those security issues. First, I present a deep learning model, APT Detection, capable of detecting anomalous activities in a system. Evaluation of this model demonstrates how it can contribute to early detection of an APT attack with an Area Under the Curve (AUC) of up to 91% on a Receiver Operating Characteristic (ROC) curve. Second, I present DAPT2020, a first of its kind dataset capturing an APT attack exploiting web and system vulnerabilities in an emulated organization’s production network. Evaluation of the dataset using well known machine learning models demonstrates the need for better deep learning models to detect APT attacks. I then present DAPT2021, a semi-synthetic dataset capturing an APT attackexploiting human vulnerabilities, alongside 2 less skilled attacks. By emulating the normal behavior of the employees in a set target organization, DAPT2021 has been created to enable researchers study the causations and correlations among the captured data, a much-needed information to detect an underlying threat early. Finally, I present a distributed defense framework, SmartDefense, that can detect and mitigate over 90% of DDoS traffic at the source and over 97.5% of the remaining DDoS traffic at the Internet Service Provider’s (ISP’s) edge network. Evaluation of this work shows how by using attributes sent by customer edge network, SmartDefense can further help ISPs prevent up to 51.95% of the DDoS traffic from going to the destination.
ContributorsMyneni, Sowmya (Author) / Xue, Guoliang (Thesis advisor) / Doupe, Adam (Committee member) / Li, Baoxin (Committee member) / Baral, Chitta (Committee member) / Arizona State University (Publisher)
Created2022
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Description
Recent advances in cyber-physical systems, artificial intelligence, and cloud computing have driven the widespread deployment of Internet-of-Things (IoT) devices in smart homes. However, the spate of cyber attacks exploiting the vulnerabilities and weak security management of smart home IoT devices have highlighted the urgency and challenges of designing efficient mechanisms

Recent advances in cyber-physical systems, artificial intelligence, and cloud computing have driven the widespread deployment of Internet-of-Things (IoT) devices in smart homes. However, the spate of cyber attacks exploiting the vulnerabilities and weak security management of smart home IoT devices have highlighted the urgency and challenges of designing efficient mechanisms for detecting, analyzing, and mitigating security threats towards them. In this dissertation, I seek to address the security and privacy issues of smart home IoT devices from the perspectives of traffic measurement, pattern recognition, and security applications. I first propose an efficient multidimensional smart home network traffic measurement framework, which enables me to deeply understand the smart home IoT ecosystem and detect various vulnerabilities and flaws. I further design intelligent schemes to efficiently extract security-related IoT device event and user activity patterns from the encrypted smart home network traffic. Based on the knowledge of how smart home operates, different systems for securing smart home networks are proposed and implemented, including abnormal network traffic detection across multiple IoT networking protocol layers, smart home safety monitoring with extracted spatial information about IoT device events, and system-level IoT vulnerability analysis and network hardening.
ContributorsWan, Yinxin (Author) / Xue, Guoliang (Thesis advisor) / Xu, Kuai (Thesis advisor) / Yang, Yezhou (Committee member) / Zhang, Yanchao (Committee member) / Arizona State University (Publisher)
Created2023
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Description
Nowadays, wireless communications and networks have been widely used in our daily lives. One of the most important topics related to networking research is using optimization tools to improve the utilization of network resources. In this dissertation, we concentrate on optimization for resource-constrained wireless networks, and study two fundamental resource-allocation

Nowadays, wireless communications and networks have been widely used in our daily lives. One of the most important topics related to networking research is using optimization tools to improve the utilization of network resources. In this dissertation, we concentrate on optimization for resource-constrained wireless networks, and study two fundamental resource-allocation problems: 1) distributed routing optimization and 2) anypath routing optimization. The study on the distributed routing optimization problem is composed of two main thrusts, targeted at understanding distributed routing and resource optimization for multihop wireless networks. The first thrust is dedicated to understanding the impact of full-duplex transmission on wireless network resource optimization. We propose two provably good distributed algorithms to optimize the resources in a full-duplex wireless network. We prove their optimality and also provide network status analysis using dual space information. The second thrust is dedicated to understanding the influence of network entity load constraints on network resource allocation and routing computation. We propose a provably good distributed algorithm to allocate wireless resources. In addition, we propose a new subgradient optimization framework, which can provide findgrained convergence, optimality, and dual space information at each iteration. This framework can provide a useful theoretical foundation for many networking optimization problems. The study on the anypath routing optimization problem is composed of two main thrusts. The first thrust is dedicated to understanding the computational complexity of multi-constrained anypath routing and designing approximate solutions. We prove that this problem is NP-hard when the number of constraints is larger than one. We present two polynomial time K-approximation algorithms. One is a centralized algorithm while the other one is a distributed algorithm. For the second thrust, we study directional anypath routing and present a cross-layer design of MAC and routing. For the MAC layer, we present a directional anycast MAC. For the routing layer, we propose two polynomial time routing algorithms to compute directional anypaths based on two antenna models, and prove their ptimality based on the packet delivery ratio metric.
ContributorsFang, Xi (Author) / Xue, Guoliang (Thesis advisor) / Yau, Sik-Sang (Committee member) / Ye, Jieping (Committee member) / Zhang, Junshan (Committee member) / Arizona State University (Publisher)
Created2013