Matching Items (3)
Description
X-ray diffraction is the technique of choice to determine the three-dimensional structures of proteins. In this study it has been applied to solve the structure of the survival motor neuron (SMN) proteins, the Fenna-Mathews-Olson (FMO) from Pelodictyon phaeum (Pld. phaeum) protein, and the synthetic ATP binding protein DX. Spinal muscular atrophy (SMA) is an autosomal recessive genetic disease resulting in muscle atrophy and paralysis via degeneration of motor neurons in the spinal cord. In this work, we used X-ray diffraction technique to solve the structures of the three variant of the of SMN protein, namely SMN 1-4, SMN-WT, and SMN-Δ7. The SMN 1-4, SMN-WT, and SMN-Δ7 crystals were diffracted to 2.7 Å, 5.5 Å and 3.0 Å, respectively. The three-dimensional structures of the three SMN proteins have been solved. The FMO protein from Pld. phaeum is a water soluble protein that is embedded in the cytoplasmic membrane and serves as an energy transfer funnel between the chlorosome and the reaction center. The FMO crystal diffracted to 1.99Å resolution and the three-dimensional structure has been solved. In previous studies, double mutant, DX, protein was purified and crystallized in the presence of ATP (Simmons et al., 2010; Smith et al. 2007). DX is a synthetic ATP binding protein which resulting from a random selection of DNA library. In this study, DX protein was purified and crystallized without the presence of ATP to investigate the conformational change in DX structure. The crystals of DX were diffracted to 2.5 Å and the three-dimensional structure of DX has been solved.
ContributorsSeng, Chenda O (Author) / Allen, James P. (Thesis advisor) / Wachter, Rebekka (Committee member) / Hayes, Mark (Committee member) / Arizona State University (Publisher)
Created2013
Description
Expansive soils impose challenges on the design, maintenance and long-term stability of many engineered infrastructure. These soils are composed of different clay minerals that are susceptible to changes in moisture content. Expansive clay soils wreak havoc due to their volume change property and, in many cases, exhibit extreme swelling and shrinking potentials. Understanding what type of minerals and clays react in the presence of water would allow for a more robust design and a better way to mitigate undesirable soil volume change. The relatively quick and widely used method of X-ray Diffraction (XRD) allows identifying the type of minerals present in the soil. As part of this study, three different clays from Colorado, San Antonio Texas, and Anthem Arizona were examined using XRD techniques. Oedometer-type testing was simultaneously preformed in the laboratory to benchmark the behavior of these soils. This analysis allowed performing comparative studies to determining if the XRD technique and interpretation methods currently available could serve as quantitative tools for estimating swell potential through mineral identification. The soils were analyzed using two different software protocols after being subjected to different treatment techniques. Important observations include the formation of Ettringite and Thaumasite, the effect of mixed-layer clays in the interpretation of the data, and the soils being subject to Gypsification. The swelling data obtained from the oedometer-type laboratory testing was compared with predictive swelling functions available from literature. A correlation analysis was attempted in order to find what index properties and mineralogy parameters were most significant to the swelling behavior of the soils. The analysis demonstrated that Gypsification is as important to the swelling potential of the soil as the presence of expansive clays; and it should be considered in the design and construction of structures in expansive soils. Also, the formation of Ettringite and Thaumasite observed during the treatment process validates the evidence of Delayed Ettringite Formation (DEF) reported in the literature. When comparing the measured results with a proposed method from the University of Texas at Arlington (UTA), it was found that the results were somewhat indicative of swell potential but did not explain all causes for expansivity. Finally, it was found that single index properties are not sufficient to estimate the free swell or the swell pressure of expansive soils. In order to have a significant correlation, two or more index properties should be combined when estimating the swell potential. When properties related to the soil mineralogy were correlated with swell potential parameters, the amount of Gypsum present in the soil seems to be as significant to the swell behavior of the soil as the amount of Smectite found.
ContributorsShafer, Zachery (Author) / Zapata, Claudia (Thesis advisor) / Kavazanjian, Edward (Committee member) / Houston, Sandra (Committee member) / Arizona State University (Publisher)
Created2014
Description
A piezoelectric transducer, comprised of electroded and active pad PZT layer atop a backing PZT layer and protected with an acoustic matching layer, and operating under a pulse-echo technique for longitudinal ultrasonic imaging, acts as both source and detector.
Ultrasonic transducer stacks (modules), which had failed or passed during pulse-echo sensitivity testing, were received from Consortium X. With limited background information on these stacks, the central theme was to determine the origin(s) of failure via the use of thermal and physicochemical characterization techniques.
The optical and scanning electron microscopy revealed that contact electrode layers are discontinuous in all samples, while delaminations between electrodes and pad layer were observed in failed samples. The X-ray diffraction data on the pad PZT revealed an overall c/a ratio of 1.022 ratio and morphotropic boundary composition, with significant variations of the Zr to Ti ratio within a sample and between samples. Electron probe microanalysis confirmed that the overall Zr to Ti ratio of the pad PZT was 52/48, and higher amounts of excess PbO in failed samples, whereas, inductively coupled plasma mass spectrometry revealed the presence of Mn, Al, and Sb (dopants) and presence of Cu (sintering aid) in in this hard (pad) PZT. Additionally, three exothermic peaks during thermal analysis was indicative of incomplete calcination of pad PZT. Moreover, transmission electron microscopy and scanning transmission electron microscopy revealed the presence of parylene at the Ag-pad PZT interface and within the pores of pad PZT (in failed samples subjected to electric fields). This further dilutes the electrical, mechanical, and electromechanical properties of the pad PZT, which in turn detrimentally influences the pulse echo sensitivity.
Ultrasonic transducer stacks (modules), which had failed or passed during pulse-echo sensitivity testing, were received from Consortium X. With limited background information on these stacks, the central theme was to determine the origin(s) of failure via the use of thermal and physicochemical characterization techniques.
The optical and scanning electron microscopy revealed that contact electrode layers are discontinuous in all samples, while delaminations between electrodes and pad layer were observed in failed samples. The X-ray diffraction data on the pad PZT revealed an overall c/a ratio of 1.022 ratio and morphotropic boundary composition, with significant variations of the Zr to Ti ratio within a sample and between samples. Electron probe microanalysis confirmed that the overall Zr to Ti ratio of the pad PZT was 52/48, and higher amounts of excess PbO in failed samples, whereas, inductively coupled plasma mass spectrometry revealed the presence of Mn, Al, and Sb (dopants) and presence of Cu (sintering aid) in in this hard (pad) PZT. Additionally, three exothermic peaks during thermal analysis was indicative of incomplete calcination of pad PZT. Moreover, transmission electron microscopy and scanning transmission electron microscopy revealed the presence of parylene at the Ag-pad PZT interface and within the pores of pad PZT (in failed samples subjected to electric fields). This further dilutes the electrical, mechanical, and electromechanical properties of the pad PZT, which in turn detrimentally influences the pulse echo sensitivity.
ContributorsPeri, Prudhvi Ram (Author) / Dey, Sandwip (Thesis advisor) / Smith, David (Committee member) / Alford, Terry (Committee member) / Arizona State University (Publisher)
Created2018