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- All Subjects: longitudinal data
- Creators: Grimm, Kevin
- Creators: Edward, Mike
Description
Previous research has shown functional mixed-effects models and traditional mixed-effects models perform similarly when recovering mean and individual trajectories (Fine, Suk, & Grimm, 2019). However, Fine et al. (2019) showed traditional mixed-effects models were able to more accurately recover the underlying mean curves compared to functional mixed-effects models. That project generated data following a parametric structure. This paper extended previous work and aimed to compare nonlinear mixed-effects models and functional mixed-effects models on their ability to recover underlying trajectories which were generated from an inherently nonparametric process. This paper introduces readers to nonlinear mixed-effects models and functional mixed-effects models. A simulation study is then presented where the mean and random effects structure of the simulated data were generated using B-splines. The accuracy of recovered curves was examined under various conditions including sample size, number of time points per curve, and measurement design. Results showed the functional mixed-effects models recovered the underlying mean curve more accurately than the nonlinear mixed-effects models. In general, the functional mixed-effects models recovered the underlying individual curves more accurately than the nonlinear mixed-effects models. Progesterone cycle data from Brumback and Rice (1998) were then analyzed to demonstrate the utility of both models. Both models were shown to perform similarly when analyzing the progesterone data.
ContributorsFine, Kimberly L (Author) / Grimm, Kevin J. (Thesis advisor) / Edward, Mike (Committee member) / O'Rourke, Holly (Committee member) / McNeish, Dan (Committee member) / Arizona State University (Publisher)
Created2019
Description
This paper investigates a relatively new analysis method for longitudinal data in the framework of functional data analysis. This approach treats longitudinal data as so-called sparse functional data. The first section of the paper introduces functional data and the general ideas of functional data analysis. The second section discusses the analysis of longitudinal data in the context of functional data analysis, while considering the unique characteristics of longitudinal data such, in particular sparseness and missing data. The third section introduces functional mixed-effects models that can handle these unique characteristics of sparseness and missingness. The next section discusses a preliminary simulation study conducted to examine the performance of a functional mixed-effects model under various conditions. An extended simulation study was carried out to evaluate the estimation accuracy of a functional mixed-effects model. Specifically, the accuracy of the estimated trajectories was examined under various conditions including different types of missing data and varying levels of sparseness.
ContributorsWard, Kimberly l (Author) / Suk, Hye Won (Thesis advisor) / Aiken, Leona (Committee member) / Grimm, Kevin (Committee member) / Arizona State University (Publisher)
Created2016
Description
Longitudinal recursive partitioning (LRP) is a tree-based method for longitudinal data. It takes a sample of individuals that were each measured repeatedly across time, and it splits them based on a set of covariates such that individuals with similar trajectories become grouped together into nodes. LRP does this by fitting a mixed-effects model to each node every time that it becomes partitioned and extracting the deviance, which is the measure of node purity. LRP is implemented using the classification and regression tree algorithm, which suffers from a variable selection bias and does not guarantee reaching a global optimum. Additionally, fitting mixed-effects models to each potential split only to extract the deviance and discard the rest of the information is a computationally intensive procedure. Therefore, in this dissertation, I address the high computational demand, variable selection bias, and local optimum solution. I propose three approximation methods that reduce the computational demand of LRP, and at the same time, allow for a straightforward extension to recursive partitioning algorithms that do not have a variable selection bias and can reach the global optimum solution. In the three proposed approximations, a mixed-effects model is fit to the full data, and the growth curve coefficients for each individual are extracted. Then, (1) a principal component analysis is fit to the set of coefficients and the principal component score is extracted for each individual, (2) a one-factor model is fit to the coefficients and the factor score is extracted, or (3) the coefficients are summed. The three methods result in each individual having a single score that represents the growth curve trajectory. Therefore, now that the outcome is a single score for each individual, any tree-based method may be used for partitioning the data and group the individuals together. Once the individuals are assigned to their final nodes, a mixed-effects model is fit to each terminal node with the individuals belonging to it.
I conduct a simulation study, where I show that the approximation methods achieve the goals proposed while maintaining a similar level of out-of-sample prediction accuracy as LRP. I then illustrate and compare the methods using an applied data.
I conduct a simulation study, where I show that the approximation methods achieve the goals proposed while maintaining a similar level of out-of-sample prediction accuracy as LRP. I then illustrate and compare the methods using an applied data.
ContributorsStegmann, Gabriela (Author) / Grimm, Kevin (Thesis advisor) / Edwards, Michael (Committee member) / MacKinnon, David (Committee member) / McNeish, Daniel (Committee member) / Arizona State University (Publisher)
Created2019