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- All Subjects: Charge exchange
- Creators: Chizmeshya, Andrew
Description
Converting solar energy into electricity is a reasonable way to ameliorate the current untenable energy situation. One way to harness solar energy is to mimic the mechanisms already present in natural photosynthesis. A key component of many artificial photosynthetic systems is the linker connecting the dye to an electrode. Studying the associated electron transport process is important for improving linker efficiency. Similarly it is important to be able to control the electron transfer to the dye from a water oxidation catalyst, and to be able to improve the lifetime of the charge separated state. Natural photosynthesis provides a blueprint for this in the tyrosine-histidine pair in photosystem II. In this work, research on these topics is described.
ContributorsTomlin, John Jacob (Author) / Moore, Ana L (Thesis advisor) / Gust, Devens (Committee member) / Kodis, Gerdenis (Committee member) / Arizona State University (Publisher)
Created2015
Description
This thesis is devoted to the theoretical and computational study of electron transport in molecular junctions where one or more hydrogen bonds are involved in the process. While electron transport through covalent bonds has been extensively studied, in recent work the focus has been shifted towards hydrogen-bonded systems due to their ubiquitous presence in biological systems and their potential in forming nano- junctions between molecular electronic devices and biological systems.
This analysis allows us to significantly expand our comprehension of the experimentally observed result that the inclusion of hydrogen bonding in a molecular junc- tion significantly impacts its transport properties, a fact that has important implications for our understanding of transport through DNA, and nano-biological interfaces in general. In part of this work I have explored the implications of quasiresonant transport in short chains of weakly-bonded molecular junctions involving hydrogen bonds. I used theoretical and computational analysis to interpret recent experiments and explain the role of Fano resonances in the transmission properties of the junction.
In a different direction, I have undertaken the study of the transversal conduction through nucleotide chains that involve a variable number of different hydrogen bonds, e.g. NH···O, OH···O, and NH···N, which are the three most prevalent hydrogen bonds in biological systems and organic electronics. My effort here has fo- cused on the analysis of electronic descriptors that allow a simplified conceptual and computational understanding of transport properties. Specifically, I have expanded our previous work where the molecular polarizability was used as a conductance de- scriptor to include the possibility of atomic and bond partitions of the molecular polarizability. This is important because it affords an alternative molecular descrip- tion of conductance that is not based on the conventional view of molecular orbitals as transport channels. My findings suggest that the hydrogen-bond networks are crucial in understanding the conductance of these junctions.
A broader impact of this work pertains the fact that characterizing transport through hydrogen bonding networks may help in developing faster and cost-effective approaches to personalized medicine, to advance DNA sequencing and implantable electronics, and to progress in the design and application of new drugs.
This analysis allows us to significantly expand our comprehension of the experimentally observed result that the inclusion of hydrogen bonding in a molecular junc- tion significantly impacts its transport properties, a fact that has important implications for our understanding of transport through DNA, and nano-biological interfaces in general. In part of this work I have explored the implications of quasiresonant transport in short chains of weakly-bonded molecular junctions involving hydrogen bonds. I used theoretical and computational analysis to interpret recent experiments and explain the role of Fano resonances in the transmission properties of the junction.
In a different direction, I have undertaken the study of the transversal conduction through nucleotide chains that involve a variable number of different hydrogen bonds, e.g. NH···O, OH···O, and NH···N, which are the three most prevalent hydrogen bonds in biological systems and organic electronics. My effort here has fo- cused on the analysis of electronic descriptors that allow a simplified conceptual and computational understanding of transport properties. Specifically, I have expanded our previous work where the molecular polarizability was used as a conductance de- scriptor to include the possibility of atomic and bond partitions of the molecular polarizability. This is important because it affords an alternative molecular descrip- tion of conductance that is not based on the conventional view of molecular orbitals as transport channels. My findings suggest that the hydrogen-bond networks are crucial in understanding the conductance of these junctions.
A broader impact of this work pertains the fact that characterizing transport through hydrogen bonding networks may help in developing faster and cost-effective approaches to personalized medicine, to advance DNA sequencing and implantable electronics, and to progress in the design and application of new drugs.
ContributorsWimmer, Michael (Author) / Mujica, Vladimiro (Thesis advisor) / Wolf, George (Committee member) / Chizmeshya, Andrew (Committee member) / Arizona State University (Publisher)
Created2017
Description
We studied the relationship between the polarizability and the molecular conductance
that arises in the response of a molecule to an external electric field. To illustrate
the plausibility of the idea, we used Simmons' tunneling model, which describes image
charge and dielectric effects on electron transport through a barrier. In such a
model, the barrier height depends on the dielectric constant of the electrode-molecule-electrode junction, which in turn can be approximately expressed in terms of the
molecular polarizability via the classical Clausius-Mossotti relation. In addition to
using the tunneling model, the validity of the relationships between the molecular
polarizability and the molecular conductance was tested by comparing calculated
and experimentally measured conductance of different chemical structures ranging
from covalent bonded to non-covalent bonded systems. We found that either using
the tunneling model or the first-principle calculated quantities or experimental data,
the conductance decreases as the molecular polarizability increases. In contrast to
this strong correlation, our results showed that in some cases there was a weaker or
none correlation between the conductance and other molecular electronic properties
including HOMO-LUMO gap, chemical geometries, and interactions energies. All
these results together suggest that using the molecular polarizability as a molecular
descriptor for conductance can offer some advantages compared to using other
molecular electronic properties and can give additional insight about the electronic
transport property of a junction.
These results also show the validity of the physically intuitive picture that to a first
approximation a molecule in a junction behaves as a dielectric that is polarized in the
opposite sense of the applied bias, thereby creating an interfacial barrier that hampers
tunneling. The use of the polarizability as a descriptor of molecular conductance offers
signicant conceptual and practical advantages over a picture based in molecular
orbitals. Despite the simplicity of our model, it sheds light on a hitherto neglected
connection between molecular polarizability and conductance and paves the way for
further conceptual and theoretical developments.
The results of this work was sent to two publications. One of them was accepted
in the International Journal of Nanotechnology (IJNT) and the other is still under
review in the Journal of Physical Chemistry C.
that arises in the response of a molecule to an external electric field. To illustrate
the plausibility of the idea, we used Simmons' tunneling model, which describes image
charge and dielectric effects on electron transport through a barrier. In such a
model, the barrier height depends on the dielectric constant of the electrode-molecule-electrode junction, which in turn can be approximately expressed in terms of the
molecular polarizability via the classical Clausius-Mossotti relation. In addition to
using the tunneling model, the validity of the relationships between the molecular
polarizability and the molecular conductance was tested by comparing calculated
and experimentally measured conductance of different chemical structures ranging
from covalent bonded to non-covalent bonded systems. We found that either using
the tunneling model or the first-principle calculated quantities or experimental data,
the conductance decreases as the molecular polarizability increases. In contrast to
this strong correlation, our results showed that in some cases there was a weaker or
none correlation between the conductance and other molecular electronic properties
including HOMO-LUMO gap, chemical geometries, and interactions energies. All
these results together suggest that using the molecular polarizability as a molecular
descriptor for conductance can offer some advantages compared to using other
molecular electronic properties and can give additional insight about the electronic
transport property of a junction.
These results also show the validity of the physically intuitive picture that to a first
approximation a molecule in a junction behaves as a dielectric that is polarized in the
opposite sense of the applied bias, thereby creating an interfacial barrier that hampers
tunneling. The use of the polarizability as a descriptor of molecular conductance offers
signicant conceptual and practical advantages over a picture based in molecular
orbitals. Despite the simplicity of our model, it sheds light on a hitherto neglected
connection between molecular polarizability and conductance and paves the way for
further conceptual and theoretical developments.
The results of this work was sent to two publications. One of them was accepted
in the International Journal of Nanotechnology (IJNT) and the other is still under
review in the Journal of Physical Chemistry C.
ContributorsVatan Meidanshahi, Reza (Author) / Mujica, Vladimiro (Thesis advisor) / Chizmeshya, Andrew (Committee member) / Richert, Ranko (Committee member) / Arizona State University (Publisher)
Created2014