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- Creators: Beckstein, Oliver
Description
How water behaves at interfaces is relevant to many scientific and technological applications; however, many subtle phenomena are unknown in aqueous solutions. In this work, interfacial structural transition in hydration shells of a polarizable solute at critical polarizabilities is discovered. The transition is manifested in maximum water response, the reorientation of the water dipoles at the interface, and an increase in the density of dangling OH bonds. This work also addresses the role of polarizability of the active site of proteins in biological catalytic reactions. For proteins, the hydration shell becomes very heterogeneous and involves a relatively large number of water molecules. The molecular dynamics simulations show that the polarizability, along with the atomic charge distribution, needs to be a part of the picture describing how enzymes work. Non Gaussian dynamics in time-resolved linear and nonlinear (correlation) 2D spectra are also analyzed.
Additionally, a theoretical formalism is presented to show that when preferential orientations of water dipoles exist at the interface, electrophoretic charges can be produced without free charge carriers, i.e., neutral solutes can move in a constant electric field due to the divergence of polarization at the interface. Furthermore, the concept of interface susceptibility is introduced. It involves the fluctuations of the surface charge density caused by thermal motion and its correlation over the characteristic correlation length with the fluctuations of the solvent charge density. Solvation free energy and interface dielectric constant are formulated accordingly. Unlike previous approaches, the solvation free energy scales quite well in a broad range of ion sizes, namely in the range of 2-14 A° . Interface dielectric constant is defined such that the boundary conditions in the Laplace equation describing a micro- or mesoscopic interface are satisfied. The effective dielectric constant of interfacial water is found to be significantly lower than its bulk value. Molecular dynamics simulation results show that the interface dielectric constant for a TIP3P water model changes from nine to four when the effective solute radius is increased from 5 A° to 18 A° . The small value of the interface dielectric constant of water has potentially dramatic consequences for hydration.
Additionally, a theoretical formalism is presented to show that when preferential orientations of water dipoles exist at the interface, electrophoretic charges can be produced without free charge carriers, i.e., neutral solutes can move in a constant electric field due to the divergence of polarization at the interface. Furthermore, the concept of interface susceptibility is introduced. It involves the fluctuations of the surface charge density caused by thermal motion and its correlation over the characteristic correlation length with the fluctuations of the solvent charge density. Solvation free energy and interface dielectric constant are formulated accordingly. Unlike previous approaches, the solvation free energy scales quite well in a broad range of ion sizes, namely in the range of 2-14 A° . Interface dielectric constant is defined such that the boundary conditions in the Laplace equation describing a micro- or mesoscopic interface are satisfied. The effective dielectric constant of interfacial water is found to be significantly lower than its bulk value. Molecular dynamics simulation results show that the interface dielectric constant for a TIP3P water model changes from nine to four when the effective solute radius is increased from 5 A° to 18 A° . The small value of the interface dielectric constant of water has potentially dramatic consequences for hydration.
ContributorsDinpajooh, Mohammadhasan (Author) / Matyushov, Dmitry V (Thesis advisor) / Richert, Ranko (Committee member) / Beckstein, Oliver (Committee member) / Arizona State University (Publisher)
Created2016
Temperature and polarizability effects on electron transfer in biology and artificial photosynthesis
Description
This study aims to address the deficiencies of the Marcus model of electron transfer
(ET) and then provide modifications to the model. A confirmation of the inverted energy
gap law, which is the cleanest verification so far, is presented for donor-acceptor complexes.
In addition to the macroscopic properties of the solvent, the physical properties of the solvent
are incorporated in the model via the microscopic solvation model. For the molecules
studied in this dissertation, the rate constant first increases with cooling, in contrast to the
prediction of the Arrhenius law, and then decreases at lower temperatures. Additionally,
the polarizability of solute, which was not considered in the original Marcus theory, is included
by the Q-model of ET. Through accounting for the polarizability of the reactants, the
Q-model offers an important design principle for achieving high performance solar energy
conversion materials. By means of the analytical Q-model of ET, it is shown that including
molecular polarizability of C60 affects the reorganization energy and the activation barrier
of ET reaction.
The theory and Electrochemistry of Ferredoxin and Cytochrome c are also investigated.
By providing a new formulation for reaction reorganization energy, a long-standing disconnect
between the results of atomistic simulations and cyclic voltametery experiments is
resolved. The significant role of polarizability of enzymes in reducing the activation energy
of ET is discussed. The binding/unbinding of waters to the active site of Ferredoxin leads
to non-Gaussian statistics of energy gap and result in a smaller activation energy of ET.
Furthermore, the dielectric constant of water at the interface of neutral and charged
C60 is studied. The dielectric constant is found to be in the range of 10 to 22 which is
remarkably smaller compared to bulk water( 80). Moreover, the interfacial structural
crossover and hydration thermodynamic of charged C60 in water is studied. Increasing the
charge of the C60 molecule result in a dramatic structural transition in the hydration shell,
which lead to increase in the population of dangling O-H bonds at the interface.
(ET) and then provide modifications to the model. A confirmation of the inverted energy
gap law, which is the cleanest verification so far, is presented for donor-acceptor complexes.
In addition to the macroscopic properties of the solvent, the physical properties of the solvent
are incorporated in the model via the microscopic solvation model. For the molecules
studied in this dissertation, the rate constant first increases with cooling, in contrast to the
prediction of the Arrhenius law, and then decreases at lower temperatures. Additionally,
the polarizability of solute, which was not considered in the original Marcus theory, is included
by the Q-model of ET. Through accounting for the polarizability of the reactants, the
Q-model offers an important design principle for achieving high performance solar energy
conversion materials. By means of the analytical Q-model of ET, it is shown that including
molecular polarizability of C60 affects the reorganization energy and the activation barrier
of ET reaction.
The theory and Electrochemistry of Ferredoxin and Cytochrome c are also investigated.
By providing a new formulation for reaction reorganization energy, a long-standing disconnect
between the results of atomistic simulations and cyclic voltametery experiments is
resolved. The significant role of polarizability of enzymes in reducing the activation energy
of ET is discussed. The binding/unbinding of waters to the active site of Ferredoxin leads
to non-Gaussian statistics of energy gap and result in a smaller activation energy of ET.
Furthermore, the dielectric constant of water at the interface of neutral and charged
C60 is studied. The dielectric constant is found to be in the range of 10 to 22 which is
remarkably smaller compared to bulk water( 80). Moreover, the interfacial structural
crossover and hydration thermodynamic of charged C60 in water is studied. Increasing the
charge of the C60 molecule result in a dramatic structural transition in the hydration shell,
which lead to increase in the population of dangling O-H bonds at the interface.
ContributorsWaskasi, Morteza M (Author) / Matyushov, Dmitry (Thesis advisor) / Richert, Ranko (Committee member) / Heyden, Matthias (Committee member) / Beckstein, Oliver (Committee member) / Arizona State University (Publisher)
Created2019